Wall clock time and date at job start Mon Mar 30 2020 05:46:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.47450 * 2 1 4 4 C 1.50700 * 109.47184 * 240.00226 * 2 1 3 5 5 C 1.37644 * 120.12563 * 294.52654 * 4 2 1 6 6 C 1.38609 * 120.24633 * 179.69936 * 5 4 2 7 7 C 1.38664 * 120.50128 * 0.60979 * 6 5 4 8 8 C 1.37594 * 120.24539 * 359.67046 * 7 6 5 9 9 C 1.40693 * 120.12986 * 114.80971 * 4 2 1 10 10 C 1.41404 * 120.24424 * 0.02562 * 9 4 2 11 11 H 1.08001 * 119.99408 * 328.47707 * 10 9 4 12 12 C 1.39943 * 119.99840 * 148.48321 * 10 9 4 13 13 N 1.30820 * 120.00076 * 348.55172 * 12 10 9 14 14 Si 1.86803 * 119.99589 * 168.55547 * 12 10 9 15 15 H 1.48497 * 109.47021 * 359.97438 * 14 12 10 16 16 H 1.48499 * 109.46726 * 120.00033 * 14 12 10 17 17 H 1.48503 * 109.46776 * 239.99474 * 14 12 10 18 18 C 1.53000 * 109.47116 * 119.99880 * 2 1 3 19 19 H 1.08999 * 111.01943 * 55.78004 * 18 2 1 20 20 C 1.55309 * 111.12754 * 179.97438 * 18 2 1 21 21 C 1.54381 * 102.43660 * 152.15586 * 20 18 2 22 22 O 1.43237 * 107.58723 * 338.54181 * 21 20 18 23 23 C 1.43639 * 109.97501 * 358.28970 * 22 21 20 24 24 H 1.09002 * 109.46554 * 59.99807 * 1 2 3 25 25 H 1.09000 * 109.46939 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.46934 * 300.00243 * 1 2 3 27 27 H 1.07996 * 119.87613 * 0.02562 * 5 4 2 28 28 H 1.07997 * 119.75050 * 180.30774 * 6 5 4 29 29 H 1.08005 * 119.87636 * 179.70461 * 7 6 5 30 30 H 1.08005 * 120.12143 * 180.02562 * 8 7 6 31 31 H 0.97003 * 120.00031 * 180.02562 * 13 12 10 32 32 H 1.09007 * 110.84422 * 33.86426 * 20 18 2 33 33 H 1.08993 * 110.84927 * 270.45105 * 20 18 2 34 34 H 1.08997 * 109.82943 * 98.05619 * 21 20 18 35 35 H 1.09004 * 109.82677 * 219.03235 * 21 20 18 36 36 H 1.08998 * 110.31364 * 143.33990 * 23 22 21 37 37 H 1.09000 * 110.31183 * 265.41208 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 6 1.7967 -2.0564 -1.3957 6 6 2.2522 -2.7109 -2.5294 7 6 2.9601 -2.0225 -3.5029 8 6 3.2122 -0.6779 -3.3559 9 6 2.7491 -0.0016 -2.2119 10 6 3.0029 1.3800 -2.0499 11 1 2.2944 2.0007 -1.5215 12 6 4.1719 1.9430 -2.5742 13 7 5.1307 1.1689 -3.0133 14 14 4.3630 3.7998 -2.6471 15 1 3.1458 4.4448 -2.0927 16 1 5.5470 4.2071 -1.8487 17 1 4.5482 4.2233 -4.0584 18 6 2.0400 -0.7212 1.2493 19 1 1.6308 -1.7295 1.3130 20 6 3.5924 -0.7442 1.2878 21 6 3.8865 -0.8053 2.8021 22 8 2.7285 -0.3152 3.4880 23 6 1.7314 0.0925 2.5379 24 1 -0.3632 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.2503 -2.6034 -0.6417 28 1 2.0585 -3.7661 -2.6532 29 1 3.3144 -2.5436 -4.3801 30 1 3.7634 -0.1435 -4.1157 31 1 5.9412 1.5591 -3.3765 32 1 4.0048 0.1643 0.8488 33 1 3.9800 -1.6281 0.7814 34 1 4.0839 -1.8353 3.0992 35 1 4.7478 -0.1798 3.0370 36 1 0.7350 -0.1493 2.9078 37 1 1.8117 1.1614 2.3402 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260292319.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:28 Heat of formation + Delta-G solvation = -60.967262 kcal Electronic energy + Delta-G solvation = -18272.963150 eV Core-core repulsion = 15592.346791 eV Total energy + Delta-G solvation = -2680.616358 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.72192 -39.30804 -35.89130 -35.37468 -31.94637 -31.41883 -30.49036 -28.93077 -27.06396 -24.77686 -23.13723 -22.73435 -22.03737 -20.28521 -19.03512 -17.67677 -17.10484 -16.86308 -16.23227 -15.89414 -15.38924 -15.06174 -14.42479 -14.34948 -14.29233 -13.91034 -13.76750 -13.48892 -13.06172 -12.99383 -12.79603 -12.45627 -12.31370 -12.25080 -11.96276 -11.89357 -11.64651 -11.52772 -11.05750 -10.94295 -10.82038 -10.44529 -9.15943 -9.08790 -8.52765 -6.26538 1.02630 1.17123 1.38385 1.50752 1.51022 2.22734 2.83580 2.99015 3.60566 3.79792 3.90315 4.04136 4.27350 4.37253 4.44498 4.52061 4.61709 4.63680 4.74894 4.80483 4.86093 4.89967 4.94403 5.04924 5.11587 5.18094 5.28422 5.33041 5.35858 5.45662 5.54567 5.65067 5.83707 6.04807 6.10297 6.21421 6.23928 6.48622 6.78478 7.04542 7.13318 8.44830 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.016685 B = 0.009693 C = 0.007498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1677.722734 B = 2887.882157 C = 3733.281232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.022 4.022 3 H 0.064 0.936 4 C -0.168 4.168 5 C -0.097 4.097 6 C -0.232 4.232 7 C -0.124 4.124 8 C -0.183 4.183 9 C 0.087 3.913 10 C -0.488 4.488 11 H 0.077 0.923 12 C 0.035 3.965 13 N -0.839 5.839 14 Si 0.967 3.033 15 H -0.256 1.256 16 H -0.271 1.271 17 H -0.271 1.271 18 C -0.098 4.098 19 H 0.087 0.913 20 C -0.141 4.141 21 C 0.055 3.945 22 O -0.404 6.404 23 C 0.057 3.943 24 H 0.041 0.959 25 H 0.059 0.941 26 H 0.070 0.930 27 H 0.115 0.885 28 H 0.113 0.887 29 H 0.101 0.899 30 H 0.090 0.910 31 H 0.281 0.719 32 H 0.054 0.946 33 H 0.067 0.933 34 H 0.081 0.919 35 H 0.068 0.932 36 H 0.104 0.896 37 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.473 -1.425 6.920 8.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.041 4.041 3 H 0.082 0.918 4 C -0.170 4.170 5 C -0.115 4.115 6 C -0.251 4.251 7 C -0.142 4.142 8 C -0.203 4.203 9 C 0.085 3.915 10 C -0.519 4.519 11 H 0.095 0.905 12 C -0.177 4.177 13 N -0.467 5.467 14 Si 0.789 3.211 15 H -0.180 1.180 16 H -0.197 1.197 17 H -0.196 1.196 18 C -0.117 4.117 19 H 0.106 0.894 20 C -0.179 4.179 21 C -0.022 4.022 22 O -0.324 6.324 23 C -0.019 4.019 24 H 0.060 0.940 25 H 0.078 0.922 26 H 0.089 0.911 27 H 0.133 0.867 28 H 0.131 0.869 29 H 0.119 0.881 30 H 0.108 0.892 31 H 0.091 0.909 32 H 0.073 0.927 33 H 0.086 0.914 34 H 0.099 0.901 35 H 0.086 0.914 36 H 0.122 0.878 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -4.260 -1.399 7.048 8.354 hybrid contribution 0.757 0.716 -0.940 1.403 sum -3.503 -0.683 6.109 7.075 Atomic orbital electron populations 1.21796 0.94010 1.01906 1.01390 1.19748 0.95504 0.98338 0.90468 0.91791 1.19900 1.06875 0.93558 0.96626 1.20660 0.99777 0.94021 0.97023 1.20769 1.07609 0.99234 0.97515 1.20925 0.99740 0.94621 0.98907 1.21249 1.05563 0.94565 0.98900 1.17782 0.89969 0.93649 0.90102 1.19674 1.04948 0.94188 1.33090 0.90491 1.26558 0.94734 1.04043 0.92378 1.69877 1.05619 1.38677 1.32520 0.85369 0.79146 0.77837 0.78701 1.17991 1.19650 1.19566 1.22878 0.94528 0.99890 0.94361 0.89438 1.22951 0.96931 1.02266 0.95750 1.23160 0.88481 0.99726 0.90797 1.88299 1.27201 1.83918 1.32966 1.23625 0.92509 0.98104 0.87656 0.94017 0.92239 0.91110 0.86701 0.86916 0.88064 0.89204 0.90870 0.92675 0.91450 0.90134 0.91363 0.87821 0.92453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.05 8.93 71.98 0.64 -3.41 16 2 C -0.02 -0.81 1.93 -11.54 -0.02 -0.83 16 3 H 0.06 2.62 5.80 -2.38 -0.01 2.60 16 4 C -0.17 -7.37 4.21 -19.40 -0.08 -7.45 16 5 C -0.10 -3.94 8.78 22.22 0.20 -3.75 16 6 C -0.23 -9.76 10.05 22.46 0.23 -9.53 16 7 C -0.12 -5.73 10.02 22.22 0.22 -5.51 16 8 C -0.18 -9.59 8.64 22.73 0.20 -9.40 16 9 C 0.09 4.46 5.51 -21.29 -0.12 4.34 16 10 C -0.49 -25.20 8.10 23.46 0.19 -25.01 16 11 H 0.08 3.84 6.58 -2.91 -0.02 3.82 16 12 C 0.04 1.78 5.22 85.26 0.45 2.22 16 13 N -0.84 -44.27 11.07 21.83 0.24 -44.03 16 14 Si 0.97 38.66 29.57 68.60 2.03 40.69 16 15 H -0.26 -9.92 7.11 99.48 0.71 -9.21 16 16 H -0.27 -10.56 7.11 99.48 0.71 -9.86 16 17 H -0.27 -10.57 7.11 99.48 0.71 -9.87 16 18 C -0.10 -3.13 2.27 -9.14 -0.02 -3.15 16 19 H 0.09 2.62 7.36 -2.39 -0.02 2.60 16 20 C -0.14 -4.92 5.84 31.86 0.19 -4.74 16 21 C 0.05 1.61 7.80 72.45 0.56 2.18 16 22 O -0.40 -12.62 11.36 -148.98 -1.69 -14.31 16 23 C 0.06 1.62 6.59 72.84 0.48 2.10 16 24 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 25 H 0.06 1.66 7.73 -2.39 -0.02 1.64 16 26 H 0.07 1.75 7.60 -2.39 -0.02 1.73 16 27 H 0.12 3.98 7.21 -2.91 -0.02 3.95 16 28 H 0.11 4.06 8.06 -2.91 -0.02 4.04 16 29 H 0.10 4.22 8.06 -2.91 -0.02 4.20 16 30 H 0.09 5.02 6.47 -2.91 -0.02 5.00 16 31 H 0.28 13.64 8.30 -92.71 -0.77 12.87 16 32 H 0.05 2.24 8.03 -2.38 -0.02 2.22 16 33 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 34 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 35 H 0.07 1.92 8.14 -2.38 -0.02 1.90 16 36 H 0.10 2.42 8.13 -2.39 -0.02 2.40 16 37 H 0.06 1.66 7.99 -2.39 -0.02 1.64 16 Total: -1.00 -56.77 297.10 4.73 -52.04 By element: Atomic # 1 Polarization: 26.49 SS G_CDS: 1.04 Total: 27.54 kcal Atomic # 6 Polarization: -65.03 SS G_CDS: 3.11 Total: -61.92 kcal Atomic # 7 Polarization: -44.27 SS G_CDS: 0.24 Total: -44.03 kcal Atomic # 8 Polarization: -12.62 SS G_CDS: -1.69 Total: -14.31 kcal Atomic # 14 Polarization: 38.66 SS G_CDS: 2.03 Total: 40.69 kcal Total: -56.77 4.73 -52.04 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260292319.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.928 kcal (2) G-P(sol) polarization free energy of solvation -56.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds