Wall clock time and date at job start Mon Mar 30 2020 05:46:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47439 * 2 1 4 4 C 1.50700 * 109.47099 * 119.99708 * 2 1 3 5 5 C 1.37636 * 120.13042 * 59.98502 * 4 2 1 6 6 C 1.38616 * 120.25092 * 179.74883 * 5 4 2 7 7 C 1.38655 * 120.50038 * 0.50356 * 6 5 4 8 8 C 1.37599 * 120.24683 * 359.77757 * 7 6 5 9 9 C 1.40699 * 120.12742 * 240.26347 * 4 2 1 10 10 C 1.41394 * 120.24447 * 0.02562 * 9 4 2 11 11 H 1.08000 * 120.00475 * 329.70096 * 10 9 4 12 12 C 1.39946 * 119.99967 * 149.69601 * 10 9 4 13 13 N 1.30821 * 120.00291 * 163.47292 * 12 10 9 14 14 Si 1.86805 * 119.99851 * 343.47806 * 12 10 9 15 15 H 1.48497 * 109.47337 * 90.45033 * 14 12 10 16 16 H 1.48504 * 109.46876 * 210.45037 * 14 12 10 17 17 H 1.48493 * 109.47125 * 330.44878 * 14 12 10 18 18 C 1.53004 * 109.47471 * 239.99665 * 2 1 3 19 19 H 1.08999 * 110.82668 * 297.80965 * 18 2 1 20 20 C 1.54811 * 110.90717 * 174.16100 * 18 2 1 21 21 C 1.54103 * 104.18492 * 220.91999 * 20 18 2 22 22 O 1.43886 * 107.37441 * 358.10493 * 21 20 18 23 23 C 1.44372 * 106.90105 * 26.27315 * 22 21 20 24 24 H 1.08994 * 109.47702 * 300.00166 * 1 2 3 25 25 H 1.09002 * 109.47174 * 60.00803 * 1 2 3 26 26 H 1.09009 * 109.47163 * 180.02562 * 1 2 3 27 27 H 1.08000 * 119.87306 * 359.97438 * 5 4 2 28 28 H 1.08000 * 119.74951 * 180.25762 * 6 5 4 29 29 H 1.08001 * 119.87331 * 179.74569 * 7 6 5 30 30 H 1.07996 * 120.12495 * 179.97438 * 8 7 6 31 31 H 0.97003 * 120.00380 * 180.02562 * 13 12 10 32 32 H 1.09003 * 110.48655 * 339.59617 * 20 18 2 33 33 H 1.09002 * 110.48856 * 102.10968 * 20 18 2 34 34 H 1.09005 * 109.87532 * 117.39023 * 21 20 18 35 35 H 1.08996 * 109.88090 * 238.39308 * 21 20 18 36 36 H 1.09004 * 110.61954 * 201.58200 * 23 22 21 37 37 H 1.08992 * 110.62427 * 78.74005 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7103 1.2305 5 6 1.7012 -2.0279 1.4512 6 6 2.1661 -2.6853 2.5795 7 6 2.9600 -2.0224 3.5031 8 6 3.2988 -0.7035 3.3058 9 6 2.8368 -0.0275 2.1612 10 6 3.1781 1.3280 1.9483 11 1 3.2739 1.7092 0.9423 12 6 3.3917 2.1758 3.0411 13 7 4.0111 3.3158 2.8734 14 14 2.7924 1.6794 4.7393 15 1 3.8632 0.9280 5.4421 16 1 2.4486 2.8962 5.5181 17 1 1.5889 0.8195 4.6078 18 6 2.0401 -0.7213 -1.2492 19 1 1.7212 -1.7636 -1.2522 20 6 3.5806 -0.6145 -1.3585 21 6 3.8363 -0.3615 -2.8569 22 8 2.5590 -0.3764 -3.5192 23 6 1.5722 0.0041 -2.5365 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5137 -0.8901 26 1 -0.3634 -1.0277 0.0005 27 1 1.0797 -2.5527 0.7407 28 1 1.9048 -3.7204 2.7426 29 1 3.3134 -2.5432 4.3808 30 1 3.9170 -0.1890 4.0266 31 1 4.1594 3.9032 3.6309 32 1 3.9484 0.2207 -0.7623 33 1 4.0511 -1.5451 -1.0409 34 1 4.3100 0.6108 -2.9930 35 1 4.4766 -1.1454 -3.2612 36 1 0.5818 -0.3414 -2.8333 37 1 1.5726 1.0841 -2.3902 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260292353.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:30 Heat of formation + Delta-G solvation = -60.191491 kcal Electronic energy + Delta-G solvation = -18276.166288 eV Core-core repulsion = 15595.583570 eV Total energy + Delta-G solvation = -2680.582719 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.81948 -39.46172 -35.93259 -35.45401 -32.26535 -31.89310 -30.61659 -28.85798 -26.94751 -24.97034 -23.49267 -22.81209 -21.89550 -20.38050 -19.22297 -17.82284 -17.26948 -16.73639 -16.31931 -16.02408 -15.60359 -15.43535 -14.70642 -14.47753 -14.13994 -13.97083 -13.83007 -13.68527 -13.40712 -12.91340 -12.73249 -12.60250 -12.46054 -12.18308 -12.10313 -11.81769 -11.61495 -11.49916 -11.27404 -10.94548 -10.82110 -10.60382 -9.39084 -9.23932 -8.83444 -6.40457 0.84136 0.90784 1.25738 1.38999 1.46896 2.11936 2.67410 3.03893 3.50982 3.75667 3.86538 3.99724 4.19262 4.35124 4.39074 4.42402 4.49488 4.60471 4.66952 4.74295 4.83232 4.87752 4.89522 4.94340 4.96867 5.10884 5.14587 5.20762 5.26942 5.38345 5.45322 5.54385 5.73758 5.92019 5.94606 6.00866 6.08946 6.36144 6.49851 6.83349 6.93908 8.23922 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.022267 B = 0.008600 C = 0.007351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.179303 B = 3254.910732 C = 3808.127715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.028 4.028 3 H 0.058 0.942 4 C -0.161 4.161 5 C -0.083 4.083 6 C -0.226 4.226 7 C -0.096 4.096 8 C -0.260 4.260 9 C 0.075 3.925 10 C -0.470 4.470 11 H 0.067 0.933 12 C 0.048 3.952 13 N -0.855 5.855 14 Si 0.959 3.041 15 H -0.266 1.266 16 H -0.284 1.284 17 H -0.258 1.258 18 C -0.098 4.098 19 H 0.089 0.911 20 C -0.147 4.147 21 C 0.049 3.951 22 O -0.397 6.397 23 C 0.052 3.948 24 H 0.039 0.961 25 H 0.069 0.931 26 H 0.065 0.935 27 H 0.125 0.875 28 H 0.125 0.875 29 H 0.117 0.883 30 H 0.091 0.909 31 H 0.289 0.711 32 H 0.054 0.946 33 H 0.072 0.928 34 H 0.055 0.945 35 H 0.098 0.902 36 H 0.113 0.887 37 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.707 -7.407 -5.002 10.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.046 4.046 3 H 0.077 0.923 4 C -0.162 4.162 5 C -0.101 4.101 6 C -0.245 4.245 7 C -0.114 4.114 8 C -0.280 4.280 9 C 0.072 3.928 10 C -0.500 4.500 11 H 0.085 0.915 12 C -0.165 4.165 13 N -0.482 5.482 14 Si 0.785 3.215 15 H -0.192 1.192 16 H -0.211 1.211 17 H -0.182 1.182 18 C -0.117 4.117 19 H 0.108 0.892 20 C -0.185 4.185 21 C -0.027 4.027 22 O -0.317 6.317 23 C -0.024 4.024 24 H 0.058 0.942 25 H 0.088 0.912 26 H 0.084 0.916 27 H 0.143 0.857 28 H 0.143 0.857 29 H 0.135 0.865 30 H 0.109 0.891 31 H 0.099 0.901 32 H 0.073 0.927 33 H 0.091 0.909 34 H 0.073 0.927 35 H 0.116 0.884 36 H 0.131 0.869 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -4.632 -7.179 -5.179 9.991 hybrid contribution 0.428 0.529 1.280 1.450 sum -4.205 -6.650 -3.899 8.781 Atomic orbital electron populations 1.21807 0.93799 1.02199 1.01396 1.19834 0.95872 0.98208 0.90689 0.92330 1.19888 1.02266 0.95163 0.98872 1.20814 0.98700 0.93619 0.96967 1.20894 1.05893 1.00272 0.97433 1.20937 0.97706 0.93913 0.98823 1.21241 1.08497 0.96311 1.01912 1.17781 0.89968 0.93100 0.91925 1.19401 1.42043 0.94038 0.94533 0.91467 1.26663 0.91721 0.94350 1.03767 1.69716 1.31889 1.11309 1.35321 0.85616 0.80477 0.77230 0.78170 1.19177 1.21086 1.18227 1.22692 0.94309 1.00444 0.94252 0.89237 1.22868 0.97125 1.02312 0.96221 1.23219 0.86315 1.01733 0.91447 1.88804 1.17180 1.90188 1.35478 1.23719 0.93270 0.98631 0.86780 0.94180 0.91220 0.91552 0.85747 0.85721 0.86542 0.89144 0.90070 0.92697 0.90949 0.92685 0.88427 0.86930 0.92686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.05 8.80 71.98 0.63 -3.42 16 2 C -0.03 -1.00 1.84 -11.54 -0.02 -1.02 16 3 H 0.06 2.49 5.72 -2.39 -0.01 2.48 16 4 C -0.16 -6.68 4.38 -19.41 -0.09 -6.77 16 5 C -0.08 -3.06 8.69 22.22 0.19 -2.86 16 6 C -0.23 -8.31 10.05 22.46 0.23 -8.09 16 7 C -0.10 -3.88 10.02 22.22 0.22 -3.66 16 8 C -0.26 -12.27 7.23 22.73 0.16 -12.10 16 9 C 0.07 3.64 5.11 -21.29 -0.11 3.53 16 10 C -0.47 -25.23 8.72 23.46 0.20 -25.02 16 11 H 0.07 3.83 6.47 -2.91 -0.02 3.82 16 12 C 0.05 2.57 5.43 85.26 0.46 3.03 16 13 N -0.85 -46.79 13.93 21.83 0.30 -46.49 16 14 Si 0.96 43.69 24.52 68.60 1.68 45.37 16 15 H -0.27 -11.70 6.49 99.48 0.65 -11.05 16 16 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 17 H -0.26 -12.02 7.00 99.48 0.70 -11.32 16 18 C -0.10 -3.04 2.48 -9.49 -0.02 -3.06 16 19 H 0.09 2.57 7.42 -2.39 -0.02 2.55 16 20 C -0.15 -4.88 6.14 31.59 0.19 -4.68 16 21 C 0.05 1.42 7.70 72.36 0.56 1.98 16 22 O -0.40 -12.12 11.53 -148.98 -1.72 -13.84 16 23 C 0.05 1.45 6.12 72.66 0.44 1.90 16 24 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 25 H 0.07 1.74 7.27 -2.39 -0.02 1.73 16 26 H 0.07 1.75 7.39 -2.38 -0.02 1.73 16 27 H 0.12 3.79 7.12 -2.91 -0.02 3.77 16 28 H 0.12 3.77 8.06 -2.91 -0.02 3.75 16 29 H 0.12 4.05 8.06 -2.91 -0.02 4.03 16 30 H 0.09 4.37 4.53 -2.91 -0.01 4.36 16 31 H 0.29 14.43 8.30 -92.71 -0.77 13.66 16 32 H 0.05 2.17 7.69 -2.39 -0.02 2.15 16 33 H 0.07 2.34 8.14 -2.39 -0.02 2.33 16 34 H 0.05 1.57 8.14 -2.38 -0.02 1.55 16 35 H 0.10 2.39 8.14 -2.39 -0.02 2.37 16 36 H 0.11 2.55 8.05 -2.38 -0.02 2.53 16 37 H 0.05 1.59 8.05 -2.39 -0.02 1.57 16 Total: -1.00 -57.75 289.97 4.31 -53.44 By element: Atomic # 1 Polarization: 20.77 SS G_CDS: 0.98 Total: 21.75 kcal Atomic # 6 Polarization: -63.30 SS G_CDS: 3.06 Total: -60.24 kcal Atomic # 7 Polarization: -46.79 SS G_CDS: 0.30 Total: -46.49 kcal Atomic # 8 Polarization: -12.12 SS G_CDS: -1.72 Total: -13.84 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 1.68 Total: 45.37 kcal Total: -57.75 4.31 -53.44 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260292353.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.751 kcal (2) G-P(sol) polarization free energy of solvation -57.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds