Wall clock time and date at job start Mon Mar 30 2020 05:46:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09002 * 109.47258 * 2 1 4 4 C 1.50705 * 109.47156 * 240.00138 * 2 1 3 5 5 C 1.37645 * 120.12297 * 294.48066 * 4 2 1 6 6 C 1.38611 * 120.24588 * 180.02562 * 5 4 2 7 7 C 1.38656 * 120.50235 * 0.02562 * 6 5 4 8 8 C 1.37608 * 120.24788 * 359.67429 * 7 6 5 9 9 C 1.40694 * 120.13035 * 114.50738 * 4 2 1 10 10 C 1.41394 * 120.24390 * 359.97438 * 9 4 2 11 11 H 1.08002 * 119.99736 * 333.51089 * 10 9 4 12 12 C 1.39949 * 119.99917 * 153.23624 * 10 9 4 13 13 N 1.30820 * 120.00287 * 345.42129 * 12 10 9 14 14 Si 1.86796 * 119.99750 * 165.42490 * 12 10 9 15 15 H 1.48498 * 109.47290 * 89.99793 * 14 12 10 16 16 H 1.48504 * 109.47001 * 209.99861 * 14 12 10 17 17 H 1.48498 * 109.47567 * 329.99869 * 14 12 10 18 18 C 1.53002 * 109.47202 * 120.00064 * 2 1 3 19 19 H 1.08998 * 110.80330 * 60.70008 * 18 2 1 20 20 C 1.54810 * 110.90627 * 297.06741 * 18 2 1 21 21 C 1.54092 * 104.19074 * 220.92104 * 20 18 2 22 22 O 1.43745 * 107.29506 * 357.97100 * 21 20 18 23 23 C 1.44420 * 106.99842 * 26.49055 * 22 21 20 24 24 H 1.09003 * 109.47150 * 300.00445 * 1 2 3 25 25 H 1.09000 * 109.46949 * 60.00041 * 1 2 3 26 26 H 1.08994 * 109.47453 * 180.02562 * 1 2 3 27 27 H 1.07998 * 119.87742 * 0.04746 * 5 4 2 28 28 H 1.08000 * 119.75103 * 180.02562 * 6 5 4 29 29 H 1.07999 * 119.87810 * 179.97438 * 7 6 5 30 30 H 1.07998 * 120.12613 * 180.32520 * 8 7 6 31 31 H 0.96998 * 120.00169 * 180.02562 * 13 12 10 32 32 H 1.08995 * 110.49155 * 339.60330 * 20 18 2 33 33 H 1.09002 * 110.48531 * 102.24318 * 20 18 2 34 34 H 1.09000 * 109.87915 * 117.39898 * 21 20 18 35 35 H 1.09002 * 109.88422 * 238.39925 * 21 20 18 36 36 H 1.08999 * 110.65166 * 201.48446 * 23 22 21 37 37 H 1.09002 * 110.60160 * 78.46928 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 6 1.7974 -2.0566 -1.3952 6 6 2.2588 -2.7127 -2.5257 7 6 2.9613 -2.0230 -3.5022 8 6 3.2023 -0.6756 -3.3614 9 6 2.7436 -0.0003 -2.2150 10 6 2.9908 1.3828 -2.0566 11 1 2.3228 1.9858 -1.4594 12 6 4.1043 1.9692 -2.6687 13 7 5.0635 1.2156 -3.1415 14 14 4.2211 3.8281 -2.8107 15 1 4.9042 4.3743 -1.6106 16 1 4.9962 4.1840 -4.0264 17 1 2.8558 4.4040 -2.9079 18 6 2.0400 -0.7213 1.2492 19 1 1.6989 -1.7564 1.2650 20 6 1.6037 0.0239 2.5342 21 6 2.8431 -0.0406 3.4475 22 8 3.8484 -0.7958 2.7510 23 6 3.5856 -0.6467 1.3387 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.2513 -2.6037 -0.6410 28 1 2.0696 -3.7690 -2.6470 29 1 3.3165 -2.5443 -4.3788 30 1 3.7452 -0.1393 -4.1256 31 1 5.8354 1.6221 -3.5654 32 1 1.3504 1.0594 2.3073 33 1 0.7590 -0.4829 3.0009 34 1 3.2085 0.9665 3.6480 35 1 2.5877 -0.5354 4.3846 36 1 4.0423 -1.4600 0.7747 37 1 3.9447 0.3185 0.9816 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260292384.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:32 Heat of formation + Delta-G solvation = -47.716792 kcal Electronic energy + Delta-G solvation = -18264.605633 eV Core-core repulsion = 15584.563858 eV Total energy + Delta-G solvation = -2680.041775 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.29976 -37.62390 -34.38623 -33.59241 -30.56997 -29.56827 -28.33759 -28.06547 -25.21798 -22.91728 -22.20097 -21.19929 -20.17920 -18.66775 -17.22225 -16.17422 -15.41469 -15.36576 -14.72112 -14.48911 -13.80553 -13.36627 -13.22642 -12.63714 -12.58081 -12.42332 -12.12557 -11.92678 -11.50454 -11.25811 -11.07914 -11.03511 -10.77277 -10.71602 -10.50328 -10.37728 -10.08226 -10.04725 -9.31959 -9.22421 -9.17795 -9.10165 -7.33605 -7.30370 -6.72728 -4.35583 2.78835 2.99700 3.06746 3.10124 3.23260 3.93024 4.40353 4.65520 4.99199 5.14929 5.32186 5.48958 5.62047 5.77641 5.85976 5.97888 6.03892 6.07668 6.16768 6.25677 6.34060 6.37973 6.41276 6.49850 6.52493 6.57932 6.81060 6.90068 6.92375 7.16700 7.28411 7.32262 7.41774 7.63774 7.92494 8.04569 8.10850 8.31329 8.63862 8.90433 8.98517 10.21396 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.016840 B = 0.009609 C = 0.007466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.357999 B = 2913.204448 C = 3749.270149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.024 4.024 3 H 0.083 0.917 4 C -0.184 4.184 5 C -0.089 4.089 6 C -0.239 4.239 7 C -0.110 4.110 8 C -0.160 4.160 9 C 0.118 3.882 10 C -0.463 4.463 11 H 0.079 0.921 12 C 0.077 3.923 13 N -0.797 5.797 14 Si 0.902 3.098 15 H -0.270 1.270 16 H -0.277 1.277 17 H -0.261 1.261 18 C -0.104 4.104 19 H 0.076 0.924 20 C -0.153 4.153 21 C 0.048 3.952 22 O -0.390 6.390 23 C 0.059 3.941 24 H 0.042 0.958 25 H 0.052 0.948 26 H 0.046 0.954 27 H 0.085 0.915 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.117 0.883 31 H 0.279 0.721 32 H 0.074 0.926 33 H 0.069 0.931 34 H 0.051 0.949 35 H 0.074 0.926 36 H 0.092 0.908 37 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.484 0.241 6.300 7.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.042 4.042 3 H 0.102 0.898 4 C -0.186 4.186 5 C -0.107 4.107 6 C -0.258 4.258 7 C -0.128 4.128 8 C -0.180 4.180 9 C 0.116 3.884 10 C -0.493 4.493 11 H 0.097 0.903 12 C -0.140 4.140 13 N -0.423 5.423 14 Si 0.726 3.274 15 H -0.196 1.196 16 H -0.202 1.202 17 H -0.185 1.185 18 C -0.122 4.122 19 H 0.094 0.906 20 C -0.190 4.190 21 C -0.029 4.029 22 O -0.309 6.309 23 C -0.017 4.017 24 H 0.061 0.939 25 H 0.072 0.928 26 H 0.065 0.935 27 H 0.103 0.897 28 H 0.102 0.898 29 H 0.103 0.897 30 H 0.134 0.866 31 H 0.090 0.910 32 H 0.093 0.907 33 H 0.088 0.912 34 H 0.070 0.930 35 H 0.092 0.908 36 H 0.110 0.890 37 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -4.076 0.148 6.284 7.491 hybrid contribution 0.038 0.859 -0.271 0.901 sum -4.037 1.006 6.013 7.312 Atomic orbital electron populations 1.21828 0.96299 1.00865 1.00460 1.19809 0.93836 0.99546 0.91037 0.89841 1.19515 1.09342 0.93077 0.96630 1.20317 0.99762 0.94189 0.96470 1.20358 1.09398 0.97804 0.98276 1.20686 0.99340 0.95206 0.97587 1.21327 1.04512 0.93337 0.98799 1.17426 0.88763 0.92874 0.89360 1.19510 1.08280 0.93750 1.27750 0.90339 1.25855 0.94809 1.00195 0.93183 1.69805 1.06063 1.37421 1.28969 0.86415 0.79388 0.82996 0.78568 1.19557 1.20192 1.18546 1.22744 0.95716 0.99711 0.94074 0.90601 1.23020 0.97993 1.01665 0.96356 1.23067 0.88254 0.95822 0.95776 1.88811 1.51311 1.71739 1.19038 1.23609 0.94829 1.02696 0.80597 0.93911 0.92847 0.93474 0.89683 0.89814 0.89706 0.86557 0.91004 0.90684 0.91246 0.93045 0.90820 0.88967 0.91351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.27 8.87 37.15 0.33 -1.94 16 2 C -0.02 -0.45 1.80 -91.77 -0.16 -0.62 16 3 H 0.08 1.69 5.77 -51.93 -0.30 1.40 16 4 C -0.18 -4.11 4.34 -103.91 -0.45 -4.56 16 5 C -0.09 -1.93 8.75 -39.66 -0.35 -2.28 16 6 C -0.24 -5.31 10.05 -39.29 -0.39 -5.71 16 7 C -0.11 -2.57 10.02 -39.66 -0.40 -2.97 16 8 C -0.16 -4.09 8.67 -38.87 -0.34 -4.43 16 9 C 0.12 2.97 5.55 -106.83 -0.59 2.38 16 10 C -0.46 -11.58 8.24 -37.74 -0.31 -11.89 16 11 H 0.08 1.88 6.38 -52.49 -0.33 1.55 16 12 C 0.08 1.87 5.19 -17.34 -0.09 1.78 16 13 N -0.80 -20.19 10.94 55.55 0.61 -19.59 16 14 Si 0.90 18.35 29.58 -169.99 -5.03 13.32 16 15 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 16 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16 17 H -0.26 -5.28 7.11 56.52 0.40 -4.87 16 18 C -0.10 -1.78 2.39 -88.61 -0.21 -1.99 16 19 H 0.08 1.31 7.17 -51.93 -0.37 0.94 16 20 C -0.15 -2.17 5.66 -25.21 -0.14 -2.31 16 21 C 0.05 0.70 7.70 37.73 0.29 0.99 16 22 O -0.39 -7.12 11.52 -35.23 -0.41 -7.52 16 23 C 0.06 1.11 6.67 38.21 0.25 1.37 16 24 H 0.04 0.60 7.25 -51.93 -0.38 0.23 16 25 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 26 H 0.05 0.75 7.73 -51.93 -0.40 0.35 16 27 H 0.09 1.66 7.13 -52.49 -0.37 1.28 16 28 H 0.08 1.67 8.06 -52.49 -0.42 1.25 16 29 H 0.08 1.80 8.06 -52.49 -0.42 1.37 16 30 H 0.12 3.08 6.23 -52.49 -0.33 2.75 16 31 H 0.28 6.51 8.30 -40.82 -0.34 6.17 16 32 H 0.07 1.03 7.67 -51.93 -0.40 0.63 16 33 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.09 1.87 8.14 -51.93 -0.42 1.44 16 37 H 0.07 1.40 8.04 -51.93 -0.42 0.98 16 LS Contribution 295.77 15.07 4.46 4.46 Total: -1.00 -26.23 295.77 -8.33 -34.57 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: -5.40 Total: 6.95 kcal Atomic # 6 Polarization: -29.62 SS G_CDS: -2.57 Total: -32.18 kcal Atomic # 7 Polarization: -20.19 SS G_CDS: 0.61 Total: -19.59 kcal Atomic # 8 Polarization: -7.12 SS G_CDS: -0.41 Total: -7.52 kcal Atomic # 14 Polarization: 18.35 SS G_CDS: -5.03 Total: 13.32 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -26.23 -8.33 -34.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260292384.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.150 kcal (2) G-P(sol) polarization free energy of solvation -26.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds