Wall clock time and date at job start Mon Mar 30 2020 05:46:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09002 * 109.47258 * 2 1 4 4 C 1.50705 * 109.47156 * 240.00138 * 2 1 3 5 5 C 1.37645 * 120.12297 * 294.48066 * 4 2 1 6 6 C 1.38611 * 120.24588 * 180.02562 * 5 4 2 7 7 C 1.38656 * 120.50235 * 0.02562 * 6 5 4 8 8 C 1.37608 * 120.24788 * 359.67429 * 7 6 5 9 9 C 1.40694 * 120.13035 * 114.50738 * 4 2 1 10 10 C 1.41394 * 120.24390 * 359.97438 * 9 4 2 11 11 H 1.08002 * 119.99736 * 333.51089 * 10 9 4 12 12 C 1.39949 * 119.99917 * 153.23624 * 10 9 4 13 13 N 1.30820 * 120.00287 * 345.42129 * 12 10 9 14 14 Si 1.86796 * 119.99750 * 165.42490 * 12 10 9 15 15 H 1.48498 * 109.47290 * 89.99793 * 14 12 10 16 16 H 1.48504 * 109.47001 * 209.99861 * 14 12 10 17 17 H 1.48498 * 109.47567 * 329.99869 * 14 12 10 18 18 C 1.53002 * 109.47202 * 120.00064 * 2 1 3 19 19 H 1.08998 * 110.80330 * 60.70008 * 18 2 1 20 20 C 1.54810 * 110.90627 * 297.06741 * 18 2 1 21 21 C 1.54092 * 104.19074 * 220.92104 * 20 18 2 22 22 O 1.43745 * 107.29506 * 357.97100 * 21 20 18 23 23 C 1.44420 * 106.99842 * 26.49055 * 22 21 20 24 24 H 1.09003 * 109.47150 * 300.00445 * 1 2 3 25 25 H 1.09000 * 109.46949 * 60.00041 * 1 2 3 26 26 H 1.08994 * 109.47453 * 180.02562 * 1 2 3 27 27 H 1.07998 * 119.87742 * 0.04746 * 5 4 2 28 28 H 1.08000 * 119.75103 * 180.02562 * 6 5 4 29 29 H 1.07999 * 119.87810 * 179.97438 * 7 6 5 30 30 H 1.07998 * 120.12613 * 180.32520 * 8 7 6 31 31 H 0.96998 * 120.00169 * 180.02562 * 13 12 10 32 32 H 1.08995 * 110.49155 * 339.60330 * 20 18 2 33 33 H 1.09002 * 110.48531 * 102.24318 * 20 18 2 34 34 H 1.09000 * 109.87915 * 117.39898 * 21 20 18 35 35 H 1.09002 * 109.88422 * 238.39925 * 21 20 18 36 36 H 1.08999 * 110.65166 * 201.48446 * 23 22 21 37 37 H 1.09002 * 110.60160 * 78.46928 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 6 1.7974 -2.0566 -1.3952 6 6 2.2588 -2.7127 -2.5257 7 6 2.9613 -2.0230 -3.5022 8 6 3.2023 -0.6756 -3.3614 9 6 2.7436 -0.0003 -2.2150 10 6 2.9908 1.3828 -2.0566 11 1 2.3228 1.9858 -1.4594 12 6 4.1043 1.9692 -2.6687 13 7 5.0635 1.2156 -3.1415 14 14 4.2211 3.8281 -2.8107 15 1 4.9042 4.3743 -1.6106 16 1 4.9962 4.1840 -4.0264 17 1 2.8558 4.4040 -2.9079 18 6 2.0400 -0.7213 1.2492 19 1 1.6989 -1.7564 1.2650 20 6 1.6037 0.0239 2.5342 21 6 2.8431 -0.0406 3.4475 22 8 3.8484 -0.7958 2.7510 23 6 3.5856 -0.6467 1.3387 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.2513 -2.6037 -0.6410 28 1 2.0696 -3.7690 -2.6470 29 1 3.3165 -2.5443 -4.3788 30 1 3.7452 -0.1393 -4.1256 31 1 5.8354 1.6221 -3.5654 32 1 1.3504 1.0594 2.3073 33 1 0.7590 -0.4829 3.0009 34 1 3.2085 0.9665 3.6480 35 1 2.5877 -0.5354 4.3846 36 1 4.0423 -1.4600 0.7747 37 1 3.9447 0.3185 0.9816 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260292384.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:32 Heat of formation + Delta-G solvation = -60.372757 kcal Electronic energy + Delta-G solvation = -18265.154436 eV Core-core repulsion = 15584.563858 eV Total energy + Delta-G solvation = -2680.590579 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.74084 -39.28880 -35.93351 -35.40310 -32.02258 -31.33891 -29.81897 -29.55243 -27.05789 -24.43278 -23.56095 -22.88239 -21.76398 -20.23492 -19.05058 -17.64501 -17.04789 -16.81003 -16.19251 -16.04914 -15.49893 -15.01836 -14.61237 -14.32932 -14.12526 -13.88839 -13.53954 -13.48508 -13.10263 -12.99737 -12.74134 -12.44900 -12.31210 -12.14328 -11.99016 -11.97121 -11.59380 -11.51300 -11.02403 -10.91602 -10.82768 -10.57904 -9.19599 -9.09787 -8.54917 -6.25379 1.03395 1.18066 1.38450 1.48903 1.54643 2.22012 2.81810 3.07575 3.68987 3.77239 3.90177 4.11073 4.27447 4.37841 4.45828 4.52368 4.62839 4.66223 4.80268 4.83707 4.88362 4.92638 4.96903 5.00034 5.08690 5.17192 5.25014 5.35164 5.38030 5.46728 5.54162 5.65704 5.82776 5.98261 6.10927 6.21323 6.25935 6.48142 6.78539 7.03477 7.14049 8.41145 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.016840 B = 0.009609 C = 0.007466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.357999 B = 2913.204448 C = 3749.270149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.022 4.022 3 H 0.065 0.935 4 C -0.180 4.180 5 C -0.095 4.095 6 C -0.239 4.239 7 C -0.121 4.121 8 C -0.191 4.191 9 C 0.086 3.914 10 C -0.486 4.486 11 H 0.081 0.919 12 C 0.034 3.966 13 N -0.833 5.833 14 Si 0.969 3.031 15 H -0.265 1.265 16 H -0.273 1.273 17 H -0.257 1.257 18 C -0.097 4.097 19 H 0.081 0.919 20 C -0.143 4.143 21 C 0.039 3.961 22 O -0.407 6.407 23 C 0.062 3.938 24 H 0.072 0.928 25 H 0.039 0.961 26 H 0.056 0.944 27 H 0.114 0.886 28 H 0.111 0.889 29 H 0.100 0.900 30 H 0.095 0.905 31 H 0.283 0.717 32 H 0.081 0.919 33 H 0.098 0.902 34 H 0.059 0.941 35 H 0.102 0.898 36 H 0.070 0.930 37 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.204 0.220 8.195 10.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.040 4.040 3 H 0.083 0.917 4 C -0.181 4.181 5 C -0.113 4.113 6 C -0.258 4.258 7 C -0.139 4.139 8 C -0.211 4.211 9 C 0.084 3.916 10 C -0.516 4.516 11 H 0.099 0.901 12 C -0.179 4.179 13 N -0.460 5.460 14 Si 0.791 3.209 15 H -0.190 1.190 16 H -0.198 1.198 17 H -0.180 1.180 18 C -0.116 4.116 19 H 0.100 0.900 20 C -0.181 4.181 21 C -0.037 4.037 22 O -0.327 6.327 23 C -0.015 4.015 24 H 0.091 0.909 25 H 0.058 0.942 26 H 0.075 0.925 27 H 0.132 0.868 28 H 0.129 0.871 29 H 0.119 0.881 30 H 0.113 0.887 31 H 0.093 0.907 32 H 0.100 0.900 33 H 0.117 0.883 34 H 0.077 0.923 35 H 0.120 0.880 36 H 0.088 0.912 37 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -5.807 0.119 8.187 10.038 hybrid contribution 0.562 0.753 -0.813 1.243 sum -5.245 0.873 7.374 9.091 Atomic orbital electron populations 1.21760 0.93905 1.01750 1.01344 1.19789 0.95659 0.98237 0.90340 0.91690 1.19931 1.07529 0.93644 0.97031 1.20655 0.99607 0.94069 0.96966 1.20740 1.08148 0.99153 0.97804 1.20919 0.99612 0.94646 0.98772 1.21314 1.06147 0.94485 0.99135 1.17792 0.90011 0.93612 0.90186 1.19721 1.08917 0.94200 1.28797 0.90128 1.26648 0.94179 1.04545 0.92551 1.69888 1.06727 1.39281 1.30084 0.85390 0.79446 0.77441 0.78632 1.18984 1.19752 1.18043 1.22643 0.93927 1.00238 0.94783 0.90026 1.23005 0.98688 1.01969 0.94424 1.23360 0.87555 0.96302 0.96495 1.88789 1.52983 1.72505 1.18403 1.23392 0.96421 1.00411 0.81243 0.90920 0.94150 0.92521 0.86812 0.87085 0.88146 0.88731 0.90695 0.90021 0.88319 0.92314 0.88009 0.91197 0.93787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.95 8.87 71.98 0.64 -3.31 16 2 C -0.02 -0.80 1.80 -11.54 -0.02 -0.82 16 3 H 0.06 2.63 5.77 -2.39 -0.01 2.62 16 4 C -0.18 -8.02 4.34 -19.40 -0.08 -8.10 16 5 C -0.09 -3.97 8.75 22.22 0.19 -3.78 16 6 C -0.24 -10.34 10.05 22.46 0.23 -10.12 16 7 C -0.12 -5.74 10.02 22.22 0.22 -5.51 16 8 C -0.19 -10.15 8.67 22.73 0.20 -9.95 16 9 C 0.09 4.47 5.55 -21.29 -0.12 4.35 16 10 C -0.49 -25.14 8.24 23.46 0.19 -24.94 16 11 H 0.08 3.98 6.38 -2.91 -0.02 3.96 16 12 C 0.03 1.72 5.19 85.26 0.44 2.17 16 13 N -0.83 -44.09 10.94 21.83 0.24 -43.85 16 14 Si 0.97 38.39 29.58 68.60 2.03 40.42 16 15 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 16 H -0.27 -10.50 7.11 99.48 0.71 -9.80 16 17 H -0.26 -9.86 7.11 99.48 0.71 -9.15 16 18 C -0.10 -3.14 2.39 -9.49 -0.02 -3.16 16 19 H 0.08 2.56 7.17 -2.39 -0.02 2.54 16 20 C -0.14 -3.55 5.66 31.58 0.18 -3.37 16 21 C 0.04 1.02 7.70 72.35 0.56 1.58 16 22 O -0.41 -14.39 11.52 -148.98 -1.72 -16.10 16 23 C 0.06 2.35 6.67 72.67 0.48 2.84 16 24 H 0.07 1.77 7.25 -2.39 -0.02 1.75 16 25 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 26 H 0.06 1.60 7.73 -2.39 -0.02 1.59 16 27 H 0.11 4.07 7.13 -2.91 -0.02 4.05 16 28 H 0.11 4.14 8.06 -2.91 -0.02 4.12 16 29 H 0.10 4.29 8.06 -2.91 -0.02 4.26 16 30 H 0.09 5.33 6.23 -2.91 -0.02 5.31 16 31 H 0.28 13.75 8.30 -92.71 -0.77 12.98 16 32 H 0.08 1.94 7.67 -2.39 -0.02 1.92 16 33 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 36 H 0.07 2.91 8.14 -2.39 -0.02 2.89 16 37 H 0.04 1.86 8.04 -2.39 -0.02 1.84 16 Total: -1.00 -58.24 295.77 4.69 -53.56 By element: Atomic # 1 Polarization: 27.08 SS G_CDS: 1.05 Total: 28.12 kcal Atomic # 6 Polarization: -65.23 SS G_CDS: 3.09 Total: -62.14 kcal Atomic # 7 Polarization: -44.09 SS G_CDS: 0.24 Total: -43.85 kcal Atomic # 8 Polarization: -14.39 SS G_CDS: -1.72 Total: -16.10 kcal Atomic # 14 Polarization: 38.39 SS G_CDS: 2.03 Total: 40.42 kcal Total: -58.24 4.69 -53.56 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260292384.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.816 kcal (2) G-P(sol) polarization free energy of solvation -58.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds