Wall clock time and date at job start Mon Mar 30 2020 05:48:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50703 * 119.99801 * 2 1 4 4 C 1.50703 * 120.00608 * 180.02562 * 2 1 3 5 5 O 1.42904 * 109.46586 * 359.97438 * 4 2 1 6 6 C 1.35906 * 116.99523 * 180.02562 * 5 4 2 7 7 C 1.38745 * 120.05769 * 0.04591 * 6 5 4 8 8 C 1.38122 * 119.94745 * 179.97438 * 7 6 5 9 9 C 1.38295 * 120.05026 * 0.02562 * 8 7 6 10 10 C 1.38243 * 120.11401 * 359.97438 * 9 8 7 11 11 C 1.38169 * 120.05492 * 0.02562 * 10 9 8 12 12 C 1.50694 * 120.02848 * 179.97438 * 11 10 9 13 13 H 1.08997 * 109.47255 * 180.02562 * 12 11 10 14 14 C 1.52997 * 109.47128 * 59.99471 * 12 11 10 15 15 C 1.50708 * 109.47179 * 299.99935 * 12 11 10 16 16 H 1.08002 * 119.99322 * 0.02562 * 15 12 11 17 17 C 1.37869 * 120.00090 * 180.02562 * 15 12 11 18 18 N 1.31512 * 120.00413 * 359.97438 * 17 15 12 19 19 Si 1.86807 * 119.99930 * 180.02562 * 17 15 12 20 20 H 1.48493 * 109.47104 * 59.99952 * 19 17 15 21 21 H 1.48500 * 109.46767 * 180.02562 * 19 17 15 22 22 H 1.48494 * 109.46882 * 299.99709 * 19 17 15 23 23 H 1.07991 * 120.00540 * 0.02562 * 1 2 3 24 24 H 1.08002 * 119.99765 * 179.97438 * 1 2 3 25 25 H 1.08991 * 109.47370 * 269.99771 * 3 2 1 26 26 H 1.09000 * 109.47158 * 30.00303 * 3 2 1 27 27 H 1.09004 * 109.46847 * 149.99543 * 3 2 1 28 28 H 1.08995 * 109.47132 * 240.00400 * 4 2 1 29 29 H 1.08995 * 109.47231 * 119.99847 * 4 2 1 30 30 H 1.08002 * 120.02960 * 359.97438 * 7 6 5 31 31 H 1.07997 * 119.97891 * 180.29661 * 8 7 6 32 32 H 1.07997 * 119.93892 * 179.97438 * 9 8 7 33 33 H 1.07998 * 119.97188 * 180.02562 * 10 9 8 34 34 H 1.09006 * 109.47084 * 179.97438 * 14 12 11 35 35 H 1.08997 * 109.47348 * 300.00312 * 14 12 11 36 36 H 1.09010 * 109.46784 * 60.00516 * 14 12 11 37 37 H 0.96999 * 120.00737 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 2.0636 -1.3050 -0.0006 5 8 1.1350 -2.3912 -0.0005 6 6 1.6546 -3.6471 -0.0004 7 6 3.0299 -3.8301 0.0005 8 6 3.5555 -5.1074 0.0011 9 6 2.7120 -6.2034 0.0002 10 6 1.3413 -6.0237 -0.0007 11 6 0.8106 -4.7479 -0.0013 12 6 -0.6836 -4.5527 -0.0028 13 1 -0.9108 -3.4867 -0.0036 14 6 -1.2840 -5.2019 1.2457 15 6 -1.2725 -5.1921 -1.2340 16 1 -0.6289 -5.6904 -1.9439 17 6 -2.6326 -5.1410 -1.4538 18 7 -3.4162 -4.5347 -0.5890 19 14 -3.3625 -5.9342 -2.9795 20 1 -3.0537 -7.3867 -2.9782 21 1 -4.8348 -5.7406 -2.9817 22 1 -2.7793 -5.3051 -4.1916 23 1 -0.5400 0.9352 -0.0004 24 1 -0.5400 -0.9353 -0.0004 25 1 2.2451 1.6198 -1.0276 26 1 1.4743 2.0648 0.5139 27 1 3.0158 1.1748 0.5139 28 1 2.6902 -1.3632 0.8894 29 1 2.6902 -1.3624 -0.8906 30 1 3.6890 -2.9745 0.0007 31 1 4.6259 -5.2505 0.0066 32 1 3.1249 -7.2013 0.0003 33 1 0.6847 -6.8811 -0.0009 34 1 -2.3649 -5.0603 1.2448 35 1 -1.0569 -6.2679 1.2460 36 1 -0.8582 -4.7394 2.1362 37 1 -4.3732 -4.4990 -0.7435 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260315905.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:48:54 Heat of formation + Delta-G solvation = -22.668568 kcal Electronic energy + Delta-G solvation = -17722.810400 eV Core-core repulsion = 15043.854797 eV Total energy + Delta-G solvation = -2678.955602 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.13400 -38.71187 -36.21625 -35.98113 -33.33711 -30.81602 -29.89306 -28.04122 -27.76067 -27.20202 -24.31058 -22.92185 -21.43831 -19.46779 -18.81628 -18.28633 -17.02250 -16.82122 -16.77752 -16.05858 -15.57724 -15.10020 -14.71345 -14.43747 -14.31141 -14.17385 -13.61961 -13.35985 -13.29581 -12.88742 -12.76246 -12.61665 -12.46434 -12.37555 -12.18513 -12.01249 -11.97713 -11.87228 -11.05611 -10.98839 -10.43980 -9.97713 -9.55254 -8.86808 -8.07035 -6.21399 0.59738 0.69818 1.25344 1.39622 1.41570 1.49251 2.37245 2.42957 3.03450 3.20090 3.78331 4.05398 4.14174 4.21119 4.25513 4.35199 4.38518 4.63480 4.64948 4.71517 4.86749 4.87091 4.93002 5.00587 5.05666 5.14480 5.24176 5.38213 5.47339 5.56560 5.63161 5.64407 5.76135 5.87137 6.05954 6.09980 6.14007 6.38860 6.72173 6.87831 7.45382 8.97148 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.016620 B = 0.008062 C = 0.006074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1684.337529 B = 3472.395246 C = 4608.460202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.142 4.142 3 C -0.104 4.104 4 C 0.085 3.915 5 O -0.331 6.331 6 C 0.096 3.904 7 C -0.209 4.209 8 C -0.098 4.098 9 C -0.158 4.158 10 C -0.094 4.094 11 C -0.102 4.102 12 C 0.081 3.919 13 H 0.004 0.996 14 C -0.118 4.118 15 C -0.519 4.519 16 H 0.048 0.952 17 C 0.012 3.988 18 N -0.918 5.918 19 Si 0.954 3.046 20 H -0.267 1.267 21 H -0.282 1.282 22 H -0.276 1.276 23 H 0.116 0.884 24 H 0.071 0.929 25 H 0.080 0.920 26 H 0.077 0.923 27 H 0.081 0.919 28 H 0.086 0.914 29 H 0.082 0.918 30 H 0.149 0.851 31 H 0.158 0.842 32 H 0.146 0.854 33 H 0.115 0.885 34 H 0.058 0.942 35 H 0.033 0.967 36 H 0.016 0.984 37 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.431 5.830 1.695 15.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.142 4.142 3 C -0.160 4.160 4 C 0.011 3.989 5 O -0.246 6.246 6 C 0.051 3.949 7 C -0.227 4.227 8 C -0.115 4.115 9 C -0.176 4.176 10 C -0.112 4.112 11 C -0.102 4.102 12 C 0.062 3.938 13 H 0.022 0.978 14 C -0.176 4.176 15 C -0.557 4.557 16 H 0.067 0.933 17 C -0.186 4.186 18 N -0.557 5.557 19 Si 0.779 3.221 20 H -0.192 1.192 21 H -0.207 1.207 22 H -0.201 1.201 23 H 0.135 0.865 24 H 0.090 0.910 25 H 0.098 0.902 26 H 0.096 0.904 27 H 0.100 0.900 28 H 0.104 0.896 29 H 0.099 0.901 30 H 0.167 0.833 31 H 0.175 0.825 32 H 0.163 0.837 33 H 0.133 0.867 34 H 0.077 0.923 35 H 0.052 0.948 36 H 0.035 0.965 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 14.043 5.945 1.731 15.347 hybrid contribution -0.993 -0.402 -0.720 1.291 sum 13.049 5.543 1.010 14.214 Atomic orbital electron populations 1.23760 0.96452 1.01723 1.00918 1.21912 0.95546 0.95222 1.01541 1.20770 1.00352 0.91508 1.03383 1.21765 0.91206 0.83468 1.02493 1.86149 1.36666 1.12720 1.89030 1.19120 0.92714 0.84064 0.98975 1.21430 0.92311 1.00021 1.08952 1.21195 1.00860 0.91015 0.98453 1.21327 0.92325 1.00322 1.03647 1.20947 0.95944 0.95539 0.98748 1.19943 0.96737 0.91910 1.01643 1.17498 0.86917 0.95292 0.94085 0.97827 1.21611 1.02167 0.98115 0.95706 1.21370 0.92380 1.35404 1.06579 0.93337 1.25736 0.97554 0.95957 0.99339 1.70024 1.04468 1.44317 1.36928 0.85679 0.77186 0.79310 0.79906 1.19200 1.20696 1.20136 0.86549 0.91045 0.90169 0.90413 0.89988 0.89614 0.90055 0.83301 0.82484 0.83657 0.86655 0.92321 0.94782 0.96499 0.93013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -6.33 13.66 67.79 0.93 -5.41 16 2 C -0.14 -3.92 6.05 -16.48 -0.10 -4.02 16 3 C -0.10 -1.83 10.03 71.24 0.71 -1.11 16 4 C 0.08 2.50 5.14 71.24 0.37 2.86 16 5 O -0.33 -13.83 7.30 -92.49 -0.68 -14.50 16 6 C 0.10 3.97 6.66 22.50 0.15 4.12 16 7 C -0.21 -6.59 9.04 22.36 0.20 -6.38 16 8 C -0.10 -2.73 10.04 22.26 0.22 -2.51 16 9 C -0.16 -5.00 10.04 22.28 0.22 -4.78 16 10 C -0.09 -3.83 8.71 22.25 0.19 -3.63 16 11 C -0.10 -4.77 4.75 -19.77 -0.09 -4.86 16 12 C 0.08 4.44 2.44 -12.29 -0.03 4.41 16 13 H 0.00 0.22 6.99 -2.39 -0.02 0.21 16 14 C -0.12 -6.23 8.78 71.98 0.63 -5.60 16 15 C -0.52 -30.30 8.24 25.60 0.21 -30.09 16 16 H 0.05 2.81 7.60 -2.91 -0.02 2.78 16 17 C 0.01 0.72 5.30 84.65 0.45 1.17 16 18 N -0.92 -55.37 11.32 21.44 0.24 -55.13 16 19 Si 0.95 45.35 29.54 68.60 2.03 47.37 16 20 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 21 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 22 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 23 H 0.12 3.19 8.04 -2.92 -0.02 3.17 16 24 H 0.07 3.07 6.84 -2.91 -0.02 3.05 16 25 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 26 H 0.08 1.23 8.06 -2.39 -0.02 1.21 16 27 H 0.08 1.13 8.12 -2.39 -0.02 1.11 16 28 H 0.09 2.11 7.66 -2.39 -0.02 2.09 16 29 H 0.08 2.09 7.66 -2.39 -0.02 2.07 16 30 H 0.15 3.60 6.30 -2.91 -0.02 3.58 16 31 H 0.16 3.02 8.06 -2.91 -0.02 3.00 16 32 H 0.15 3.57 8.06 -2.91 -0.02 3.55 16 33 H 0.12 4.82 7.57 -2.91 -0.02 4.80 16 34 H 0.06 3.37 6.07 -2.38 -0.01 3.35 16 35 H 0.03 1.67 7.39 -2.39 -0.02 1.65 16 36 H 0.02 0.79 8.14 -2.38 -0.02 0.77 16 37 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16 Total: -1.00 -69.01 307.40 6.70 -62.31 By element: Atomic # 1 Polarization: 14.74 SS G_CDS: 1.03 Total: 15.78 kcal Atomic # 6 Polarization: -59.90 SS G_CDS: 4.07 Total: -55.83 kcal Atomic # 7 Polarization: -55.37 SS G_CDS: 0.24 Total: -55.13 kcal Atomic # 8 Polarization: -13.83 SS G_CDS: -0.68 Total: -14.50 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.37 kcal Total: -69.01 6.70 -62.31 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260315905.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.645 kcal (2) G-P(sol) polarization free energy of solvation -69.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds