Wall clock time and date at job start Mon Mar 30 2020 05:30:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52993 * 109.47227 * 2 1 4 4 C 1.50704 * 109.46779 * 240.00181 * 2 1 3 5 5 H 1.08004 * 119.99776 * 240.89669 * 4 2 1 6 6 C 1.37872 * 120.00381 * 60.89626 * 4 2 1 7 7 N 1.31518 * 119.99821 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 120.00284 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47208 * 90.00044 * 8 6 4 10 10 H 1.48501 * 109.46734 * 209.99918 * 8 6 4 11 11 H 1.48496 * 109.46998 * 329.99680 * 8 6 4 12 12 C 1.50699 * 109.47262 * 120.00307 * 2 1 3 13 13 C 1.38290 * 119.97148 * 4.62634 * 12 2 1 14 14 C 1.38242 * 120.11349 * 179.97438 * 13 12 2 15 15 C 1.38169 * 120.05213 * 359.77175 * 14 13 12 16 16 C 1.38710 * 119.94592 * 0.52463 * 15 14 13 17 17 O 1.35899 * 120.05638 * 179.72124 * 16 15 14 18 18 C 1.42896 * 117.00427 * 3.58317 * 17 16 15 19 19 C 1.52999 * 117.50049 * 134.53019 * 18 17 16 20 20 C 1.52995 * 117.50079 * 203.19484 * 18 17 16 21 21 C 1.38117 * 119.97379 * 184.64939 * 12 2 1 22 22 H 1.08998 * 109.47244 * 299.99696 * 1 2 3 23 23 H 1.09001 * 109.47121 * 59.99616 * 1 2 3 24 24 H 1.09006 * 109.47120 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47323 * 179.97438 * 3 2 1 26 26 H 1.09001 * 109.47383 * 300.00223 * 3 2 1 27 27 H 1.09007 * 109.47047 * 60.00083 * 3 2 1 28 28 H 0.96994 * 120.00592 * 180.02562 * 7 6 4 29 29 H 1.07999 * 119.94626 * 0.02562 * 13 12 2 30 30 H 1.07995 * 119.97897 * 180.02562 * 14 13 12 31 31 H 1.08002 * 120.02890 * 180.25273 * 15 14 13 32 32 H 1.09002 * 115.54777 * 348.86688 * 18 17 16 33 33 H 1.09003 * 117.50016 * 215.00545 * 19 18 17 34 34 H 1.09001 * 117.49608 * 0.02987 * 19 18 17 35 35 H 1.08999 * 117.50080 * 359.97438 * 20 18 17 36 36 H 1.09006 * 117.49626 * 144.99665 * 20 18 17 37 37 H 1.08000 * 120.02812 * 359.97438 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6412 -1.5969 -1.1315 6 6 1.7145 -0.2287 -2.4827 7 7 0.9726 0.8505 -2.6033 8 14 2.3377 -1.1088 -4.0079 9 1 1.3498 -2.1361 -4.4250 10 1 2.5231 -0.1259 -5.1055 11 1 3.6356 -1.7640 -3.7057 12 6 2.0324 -0.7105 1.2304 13 6 1.1369 -1.3189 2.0909 14 6 1.5946 -1.9719 3.2201 15 6 2.9489 -2.0221 3.4892 16 6 3.8487 -1.4074 2.6310 17 8 5.1808 -1.4506 2.8966 18 6 5.5913 -2.2127 4.0335 19 6 6.7877 -3.1506 3.8608 20 6 6.9366 -1.8607 4.6715 21 6 3.3867 -0.7530 1.4980 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 3.1300 1.4424 0.0005 26 1 1.6767 1.9563 -0.8900 27 1 1.6767 1.9563 0.8900 28 1 0.7487 1.1893 -3.4841 29 1 0.0783 -1.2846 1.8799 30 1 0.8934 -2.4466 3.8904 31 1 3.3063 -2.5359 4.3694 32 1 4.7893 -2.5369 4.6966 33 1 6.7727 -4.0919 4.4103 34 1 7.2619 -3.1860 2.8800 35 1 7.5088 -1.0482 4.2238 36 1 7.0197 -1.9534 5.7545 37 1 4.0857 -0.2777 0.8257 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260338763.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:30:04 Heat of formation + Delta-G solvation = 16.214612 kcal Electronic energy + Delta-G solvation = -17671.674997 eV Core-core repulsion = 14994.405496 eV Total energy + Delta-G solvation = -2677.269501 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.81808 -38.00983 -35.61390 -34.48826 -31.51432 -29.73332 -28.35751 -25.74413 -25.14332 -23.53358 -22.54712 -21.60712 -21.07442 -19.09076 -17.56869 -16.00391 -15.78843 -15.37065 -14.85708 -14.58504 -14.33288 -13.80164 -13.47102 -12.95123 -12.80417 -12.24169 -11.76713 -11.67411 -11.43114 -11.30163 -10.95189 -10.91137 -10.85480 -10.63799 -10.43622 -10.29202 -10.16528 -9.87143 -9.53152 -9.30802 -8.91498 -8.33144 -7.92365 -7.52541 -5.96829 -4.06660 2.07825 2.11065 3.28887 3.31001 3.37804 3.42419 3.71894 4.39662 4.55965 4.62297 4.82857 5.00051 5.22634 5.29183 5.38821 5.47372 5.57419 5.75205 5.95338 5.97978 6.06009 6.26039 6.35267 6.61477 6.74299 6.89072 6.92991 6.95577 7.03903 7.11084 7.34705 7.41950 7.47559 7.68382 7.77016 7.95797 8.09545 8.19641 8.44585 8.93407 9.58228 11.04162 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.025312 B = 0.006192 C = 0.005475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.935334 B = 4520.669034 C = 5113.362982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.093 3.907 3 C -0.128 4.128 4 C -0.498 4.498 5 H 0.057 0.943 6 C 0.065 3.935 7 N -0.886 5.886 8 Si 0.892 3.108 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.275 1.275 12 C 0.012 3.988 13 C -0.166 4.166 14 C -0.089 4.089 15 C -0.237 4.237 16 C 0.118 3.882 17 O -0.287 6.287 18 C 0.007 3.993 19 C -0.188 4.188 20 C -0.175 4.175 21 C -0.142 4.142 22 H 0.012 0.988 23 H 0.084 0.916 24 H 0.030 0.970 25 H 0.029 0.971 26 H 0.089 0.911 27 H 0.009 0.991 28 H 0.260 0.740 29 H 0.124 0.876 30 H 0.113 0.887 31 H 0.117 0.883 32 H 0.124 0.876 33 H 0.101 0.899 34 H 0.102 0.898 35 H 0.102 0.898 36 H 0.103 0.897 37 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.441 -4.677 12.057 14.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.093 3.907 3 C -0.186 4.186 4 C -0.536 4.536 5 H 0.075 0.925 6 C -0.136 4.136 7 N -0.525 5.525 8 Si 0.720 3.280 9 H -0.207 1.207 10 H -0.212 1.212 11 H -0.199 1.199 12 C 0.012 3.988 13 C -0.184 4.184 14 C -0.107 4.107 15 C -0.255 4.255 16 C 0.074 3.926 17 O -0.201 6.201 18 C -0.050 4.050 19 C -0.225 4.225 20 C -0.212 4.212 21 C -0.161 4.161 22 H 0.032 0.968 23 H 0.103 0.897 24 H 0.049 0.951 25 H 0.048 0.952 26 H 0.107 0.893 27 H 0.028 0.972 28 H 0.070 0.930 29 H 0.142 0.858 30 H 0.131 0.869 31 H 0.135 0.865 32 H 0.141 0.859 33 H 0.119 0.881 34 H 0.121 0.879 35 H 0.121 0.879 36 H 0.121 0.879 37 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 5.524 -4.461 11.795 13.767 hybrid contribution 0.303 -0.693 -0.656 1.001 sum 5.827 -5.153 11.139 13.586 Atomic orbital electron populations 1.21879 0.97470 0.99130 1.00422 1.17304 0.92657 0.92138 0.88604 1.21828 0.98612 0.97601 1.00521 1.21035 1.31900 1.11196 0.89465 0.92523 1.24894 0.94983 0.94941 0.98741 1.69810 1.37435 1.22085 1.23185 0.86591 0.79326 0.79407 0.82708 1.20732 1.21237 1.19949 1.20479 0.91351 0.92112 0.94883 1.21218 1.00424 1.01360 0.95394 1.20804 0.94280 0.98447 0.97163 1.20904 0.94163 1.08492 1.01939 1.19005 0.81328 0.97165 0.95074 1.86009 1.21908 1.67197 1.44960 1.22958 0.92084 0.98955 0.91011 1.23446 1.02127 0.94489 1.02484 1.23331 0.98939 0.99504 0.99474 1.20357 0.96340 1.03550 0.95814 0.96850 0.89698 0.95139 0.95234 0.89255 0.97177 0.93007 0.85810 0.86929 0.86543 0.85908 0.88065 0.87926 0.87941 0.87890 0.85400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.09 6.93 37.16 0.26 -2.83 16 2 C 0.09 2.27 0.58 -156.81 -0.09 2.18 16 3 C -0.13 -3.09 8.00 37.15 0.30 -2.79 16 4 C -0.50 -13.36 7.75 -34.44 -0.27 -13.62 16 5 H 0.06 1.56 7.72 -52.48 -0.41 1.15 16 6 C 0.07 1.75 5.15 -17.82 -0.09 1.66 16 7 N -0.89 -24.06 9.35 55.43 0.52 -23.54 16 8 Si 0.89 21.10 29.54 -169.99 -5.02 16.08 16 9 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 10 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.27 -6.53 7.11 56.52 0.40 -6.12 16 12 C 0.01 0.26 4.70 -104.65 -0.49 -0.23 16 13 C -0.17 -3.28 8.98 -39.56 -0.36 -3.63 16 14 C -0.09 -1.51 10.04 -39.61 -0.40 -1.91 16 15 C -0.24 -3.99 9.18 -39.43 -0.36 -4.35 16 16 C 0.12 2.25 6.68 -39.22 -0.26 1.99 16 17 O -0.29 -5.07 10.39 -19.42 -0.20 -5.27 16 18 C 0.01 0.09 6.19 -26.73 -0.17 -0.07 16 19 C -0.19 -2.04 10.48 -26.69 -0.28 -2.32 16 20 C -0.18 -1.83 10.48 -26.69 -0.28 -2.11 16 21 C -0.14 -3.05 8.82 -39.43 -0.35 -3.40 16 22 H 0.01 0.27 7.73 -51.93 -0.40 -0.13 16 23 H 0.08 2.18 6.14 -51.93 -0.32 1.86 16 24 H 0.03 0.69 7.29 -51.93 -0.38 0.31 16 25 H 0.03 0.69 7.14 -51.93 -0.37 0.32 16 26 H 0.09 2.32 6.00 -51.93 -0.31 2.01 16 27 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 28 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 29 H 0.12 2.34 5.90 -52.49 -0.31 2.03 16 30 H 0.11 1.56 8.06 -52.49 -0.42 1.13 16 31 H 0.12 1.60 5.52 -52.49 -0.29 1.31 16 32 H 0.12 1.43 5.35 -51.93 -0.28 1.16 16 33 H 0.10 0.88 8.14 -51.93 -0.42 0.45 16 34 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.13 2.85 7.30 -52.49 -0.38 2.46 16 LS Contribution 297.75 15.07 4.49 4.49 Total: -1.00 -28.06 297.75 -8.17 -36.23 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: -5.12 Total: 3.45 kcal Atomic # 6 Polarization: -28.61 SS G_CDS: -2.84 Total: -31.45 kcal Atomic # 7 Polarization: -24.06 SS G_CDS: 0.52 Total: -23.54 kcal Atomic # 8 Polarization: -5.07 SS G_CDS: -0.20 Total: -5.27 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -28.06 -8.17 -36.23 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260338763.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.449 kcal (2) G-P(sol) polarization free energy of solvation -28.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.234 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds