Wall clock time and date at job start Mon Mar 30 2020 05:30:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52993 * 109.47227 * 2 1 4 4 C 1.50704 * 109.46779 * 240.00181 * 2 1 3 5 5 H 1.08004 * 119.99776 * 240.89669 * 4 2 1 6 6 C 1.37872 * 120.00381 * 60.89626 * 4 2 1 7 7 N 1.31518 * 119.99821 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 120.00284 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47208 * 90.00044 * 8 6 4 10 10 H 1.48501 * 109.46734 * 209.99918 * 8 6 4 11 11 H 1.48496 * 109.46998 * 329.99680 * 8 6 4 12 12 C 1.50699 * 109.47262 * 120.00307 * 2 1 3 13 13 C 1.38290 * 119.97148 * 4.62634 * 12 2 1 14 14 C 1.38242 * 120.11349 * 179.97438 * 13 12 2 15 15 C 1.38169 * 120.05213 * 359.77175 * 14 13 12 16 16 C 1.38710 * 119.94592 * 0.52463 * 15 14 13 17 17 O 1.35899 * 120.05638 * 179.72124 * 16 15 14 18 18 C 1.42896 * 117.00427 * 3.58317 * 17 16 15 19 19 C 1.52999 * 117.50049 * 134.53019 * 18 17 16 20 20 C 1.52995 * 117.50079 * 203.19484 * 18 17 16 21 21 C 1.38117 * 119.97379 * 184.64939 * 12 2 1 22 22 H 1.08998 * 109.47244 * 299.99696 * 1 2 3 23 23 H 1.09001 * 109.47121 * 59.99616 * 1 2 3 24 24 H 1.09006 * 109.47120 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47323 * 179.97438 * 3 2 1 26 26 H 1.09001 * 109.47383 * 300.00223 * 3 2 1 27 27 H 1.09007 * 109.47047 * 60.00083 * 3 2 1 28 28 H 0.96994 * 120.00592 * 180.02562 * 7 6 4 29 29 H 1.07999 * 119.94626 * 0.02562 * 13 12 2 30 30 H 1.07995 * 119.97897 * 180.02562 * 14 13 12 31 31 H 1.08002 * 120.02890 * 180.25273 * 15 14 13 32 32 H 1.09002 * 115.54777 * 348.86688 * 18 17 16 33 33 H 1.09003 * 117.50016 * 215.00545 * 19 18 17 34 34 H 1.09001 * 117.49608 * 0.02987 * 19 18 17 35 35 H 1.08999 * 117.50080 * 359.97438 * 20 18 17 36 36 H 1.09006 * 117.49626 * 144.99665 * 20 18 17 37 37 H 1.08000 * 120.02812 * 359.97438 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6412 -1.5969 -1.1315 6 6 1.7145 -0.2287 -2.4827 7 7 0.9726 0.8505 -2.6033 8 14 2.3377 -1.1088 -4.0079 9 1 1.3498 -2.1361 -4.4250 10 1 2.5231 -0.1259 -5.1055 11 1 3.6356 -1.7640 -3.7057 12 6 2.0324 -0.7105 1.2304 13 6 1.1369 -1.3189 2.0909 14 6 1.5946 -1.9719 3.2201 15 6 2.9489 -2.0221 3.4892 16 6 3.8487 -1.4074 2.6310 17 8 5.1808 -1.4506 2.8966 18 6 5.5913 -2.2127 4.0335 19 6 6.7877 -3.1506 3.8608 20 6 6.9366 -1.8607 4.6715 21 6 3.3867 -0.7530 1.4980 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 3.1300 1.4424 0.0005 26 1 1.6767 1.9563 -0.8900 27 1 1.6767 1.9563 0.8900 28 1 0.7487 1.1893 -3.4841 29 1 0.0783 -1.2846 1.8799 30 1 0.8934 -2.4466 3.8904 31 1 3.3063 -2.5359 4.3694 32 1 4.7893 -2.5369 4.6966 33 1 6.7727 -4.0919 4.4103 34 1 7.2619 -3.1860 2.8800 35 1 7.5088 -1.0482 4.2238 36 1 7.0197 -1.9534 5.7545 37 1 4.0857 -0.2777 0.8257 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260338763.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:30:03 Heat of formation + Delta-G solvation = 2.575651 kcal Electronic energy + Delta-G solvation = -17672.266427 eV Core-core repulsion = 14994.405496 eV Total energy + Delta-G solvation = -2677.860931 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.16477 -39.40578 -37.02471 -35.87850 -33.42560 -31.24325 -29.93405 -27.60070 -27.20102 -24.84203 -23.36585 -23.06753 -22.50246 -20.59494 -19.05161 -17.83989 -17.19043 -16.76632 -16.60211 -15.89673 -15.55700 -15.12288 -15.03878 -14.65131 -14.36682 -13.59846 -13.49264 -13.23085 -13.07888 -12.73929 -12.61788 -12.50433 -12.45796 -12.28236 -12.16795 -12.08229 -11.43757 -11.36405 -11.04720 -10.97220 -10.80201 -10.37059 -9.49798 -8.93938 -8.00927 -6.16887 0.60752 0.64414 1.40346 1.42542 1.51574 2.15176 2.44525 2.79897 3.06900 3.21694 3.66055 3.97961 3.98649 4.07502 4.17671 4.32963 4.48162 4.63182 4.71092 4.78459 4.82561 4.83499 4.95614 4.98505 5.08756 5.16311 5.18583 5.32859 5.40116 5.47513 5.59632 5.60207 5.68160 5.87494 5.99043 6.18618 6.29797 6.45282 6.62130 6.86674 7.49720 8.97703 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.025312 B = 0.006192 C = 0.005475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.935334 B = 4520.669034 C = 5113.362982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.085 3.915 3 C -0.118 4.118 4 C -0.513 4.513 5 H 0.039 0.961 6 C 0.026 3.974 7 N -0.902 5.902 8 Si 0.944 3.056 9 H -0.276 1.276 10 H -0.281 1.281 11 H -0.279 1.279 12 C -0.013 4.013 13 C -0.180 4.180 14 C -0.076 4.076 15 C -0.226 4.226 16 C 0.118 3.882 17 O -0.311 6.311 18 C -0.028 4.028 19 C -0.181 4.181 20 C -0.160 4.160 21 C -0.170 4.170 22 H 0.032 0.968 23 H 0.060 0.940 24 H 0.031 0.969 25 H 0.020 0.980 26 H 0.067 0.933 27 H 0.023 0.977 28 H 0.260 0.740 29 H 0.129 0.871 30 H 0.156 0.844 31 H 0.156 0.844 32 H 0.143 0.857 33 H 0.130 0.870 34 H 0.088 0.912 35 H 0.093 0.907 36 H 0.135 0.865 37 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.695 -6.358 14.483 16.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.085 3.915 3 C -0.176 4.176 4 C -0.551 4.551 5 H 0.057 0.943 6 C -0.174 4.174 7 N -0.541 5.541 8 Si 0.771 3.229 9 H -0.202 1.202 10 H -0.207 1.207 11 H -0.204 1.204 12 C -0.013 4.013 13 C -0.198 4.198 14 C -0.093 4.093 15 C -0.244 4.244 16 C 0.073 3.927 17 O -0.225 6.225 18 C -0.084 4.084 19 C -0.218 4.218 20 C -0.197 4.197 21 C -0.189 4.189 22 H 0.051 0.949 23 H 0.078 0.922 24 H 0.050 0.950 25 H 0.039 0.961 26 H 0.086 0.914 27 H 0.042 0.958 28 H 0.070 0.930 29 H 0.147 0.853 30 H 0.173 0.827 31 H 0.174 0.826 32 H 0.160 0.840 33 H 0.148 0.852 34 H 0.107 0.893 35 H 0.112 0.888 36 H 0.153 0.847 37 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 5.786 -6.142 14.226 16.541 hybrid contribution 0.330 -0.202 -1.308 1.364 sum 6.116 -6.344 12.919 15.638 Atomic orbital electron populations 1.21711 0.96935 0.99024 1.00036 1.17288 0.93086 0.91981 0.89173 1.21682 0.97962 0.97979 0.99944 1.21209 1.31880 1.10947 0.91073 0.94275 1.25496 0.95283 0.95634 1.00948 1.69920 1.37885 1.22725 1.23583 0.85768 0.78596 0.78576 0.79954 1.20152 1.20666 1.20379 1.20291 0.92124 0.93854 0.95012 1.21342 1.00292 1.01972 0.96233 1.21235 0.95160 0.96671 0.96265 1.21330 0.93714 1.07100 1.02286 1.19031 0.82561 0.96544 0.94521 1.85971 1.21154 1.68224 1.47145 1.23460 0.93717 1.00620 0.90604 1.23554 1.00061 0.95839 1.02395 1.23470 0.96281 0.98840 1.01137 1.20218 0.95929 1.05548 0.97224 0.94936 0.92165 0.95005 0.96083 0.91440 0.95835 0.93002 0.85294 0.82682 0.82636 0.84039 0.85233 0.89305 0.88845 0.84735 0.88088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.69 6.93 71.98 0.50 -5.19 16 2 C 0.08 4.26 0.58 -53.67 -0.03 4.23 16 3 C -0.12 -5.90 8.00 71.98 0.58 -5.32 16 4 C -0.51 -28.47 7.75 25.60 0.20 -28.27 16 5 H 0.04 2.25 7.72 -2.91 -0.02 2.22 16 6 C 0.03 1.40 5.15 84.65 0.44 1.84 16 7 N -0.90 -50.17 9.35 21.45 0.20 -49.97 16 8 Si 0.94 44.13 29.54 68.60 2.03 46.15 16 9 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 10 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 11 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 12 C -0.01 -0.57 4.70 -19.88 -0.09 -0.66 16 13 C -0.18 -6.88 8.98 22.28 0.20 -6.68 16 14 C -0.08 -2.32 10.04 22.25 0.22 -2.09 16 15 C -0.23 -6.90 9.18 22.37 0.21 -6.69 16 16 C 0.12 4.41 6.68 22.51 0.15 4.56 16 17 O -0.31 -10.79 10.39 -92.41 -0.96 -11.75 16 18 C -0.03 -0.67 6.19 30.59 0.19 -0.48 16 19 C -0.18 -3.44 10.48 30.62 0.32 -3.12 16 20 C -0.16 -2.87 10.48 30.62 0.32 -2.55 16 21 C -0.17 -7.55 8.82 22.36 0.20 -7.35 16 22 H 0.03 1.37 7.73 -2.39 -0.02 1.35 16 23 H 0.06 3.15 6.14 -2.39 -0.01 3.13 16 24 H 0.03 1.44 7.29 -2.38 -0.02 1.43 16 25 H 0.02 1.02 7.14 -2.39 -0.02 1.00 16 26 H 0.07 3.64 6.00 -2.39 -0.01 3.63 16 27 H 0.02 1.05 8.14 -2.38 -0.02 1.03 16 28 H 0.26 13.87 8.31 -92.71 -0.77 13.10 16 29 H 0.13 4.67 5.90 -2.91 -0.02 4.66 16 30 H 0.16 3.44 8.06 -2.91 -0.02 3.41 16 31 H 0.16 3.47 5.52 -2.91 -0.02 3.45 16 32 H 0.14 2.70 5.35 -2.39 -0.01 2.69 16 33 H 0.13 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 35 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 36 H 0.13 1.57 8.14 -2.38 -0.02 1.55 16 37 H 0.10 4.85 7.30 -2.91 -0.02 4.82 16 Total: -1.00 -62.49 297.75 5.72 -56.78 By element: Atomic # 1 Polarization: 15.51 SS G_CDS: 1.06 Total: 16.57 kcal Atomic # 6 Polarization: -61.17 SS G_CDS: 3.39 Total: -57.78 kcal Atomic # 7 Polarization: -50.17 SS G_CDS: 0.20 Total: -49.97 kcal Atomic # 8 Polarization: -10.79 SS G_CDS: -0.96 Total: -11.75 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.15 kcal Total: -62.49 5.72 -56.78 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260338763.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.351 kcal (2) G-P(sol) polarization free energy of solvation -62.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.776 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds