Wall clock time and date at job start Mon Mar 30 2020 05:50:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35896 * 117.00008 * 2 1 4 4 C 1.38642 * 120.09330 * 0.02562 * 3 2 1 5 5 C 1.38371 * 120.16966 * 179.97438 * 4 3 2 6 6 C 1.38302 * 119.90784 * 359.76525 * 5 4 3 7 7 C 1.38500 * 119.93795 * 0.51517 * 6 5 4 8 8 C 1.38047 * 120.28941 * 359.45950 * 7 6 5 9 9 C 1.50699 * 120.06598 * 180.25860 * 8 7 6 10 10 C 1.53002 * 109.46979 * 265.00336 * 9 8 7 11 11 C 1.50704 * 109.46952 * 179.97438 * 10 9 8 12 12 H 1.08006 * 119.99946 * 359.97438 * 11 10 9 13 13 C 1.37872 * 120.00170 * 180.02562 * 11 10 9 14 14 N 1.31523 * 119.99590 * 359.97438 * 13 11 10 15 15 Si 1.86793 * 120.00348 * 180.02562 * 13 11 10 16 16 H 1.48505 * 109.47315 * 59.99410 * 15 13 11 17 17 H 1.48497 * 109.47584 * 179.97438 * 15 13 11 18 18 H 1.48505 * 109.46983 * 299.99714 * 15 13 11 19 19 C 1.51395 * 109.73306 * 179.86963 * 6 5 4 20 20 C 1.54334 * 105.23430 * 343.14454 * 19 6 5 21 21 C 1.51378 * 130.34277 * 180.02562 * 5 4 3 22 22 H 1.09007 * 109.47027 * 59.99540 * 1 2 3 23 23 H 1.08998 * 109.47401 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.46696 * 300.00318 * 1 2 3 25 25 H 1.07994 * 119.91684 * 359.97191 * 4 3 2 26 26 H 1.08002 * 119.85942 * 179.74145 * 7 6 5 27 27 H 1.09000 * 109.46512 * 24.99902 * 9 8 7 28 28 H 1.08995 * 109.47555 * 144.99982 * 9 8 7 29 29 H 1.08999 * 109.46979 * 299.99703 * 10 9 8 30 30 H 1.09000 * 109.47224 * 59.99946 * 10 9 8 31 31 H 0.96999 * 119.99733 * 180.02562 * 14 13 11 32 32 H 1.08998 * 110.43680 * 224.12007 * 19 6 5 33 33 H 1.08990 * 110.19133 * 102.05232 * 19 6 5 34 34 H 1.08997 * 110.82715 * 267.95357 * 20 19 6 35 35 H 1.09001 * 110.81793 * 144.40379 * 20 19 6 36 36 H 1.09000 * 110.30557 * 316.09124 * 21 5 4 37 37 H 1.09000 * 110.30318 * 78.14234 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2928 2.3748 0.0005 5 6 1.9193 3.6086 0.0011 6 6 3.3005 3.6806 0.0060 7 6 4.0533 2.5180 -0.0004 8 6 3.4311 1.2857 -0.0005 9 6 4.2551 0.0239 -0.0016 10 6 4.4278 -0.4712 -1.4390 11 6 5.2523 -1.7326 -1.4401 12 1 5.6172 -2.1402 -0.5088 13 6 5.5419 -2.3659 -2.6301 14 7 5.0980 -1.8692 -3.7642 15 14 6.5633 -3.9298 -2.6316 16 1 5.8741 -4.9720 -1.8290 17 1 6.7310 -4.4103 -4.0266 18 1 7.8966 -3.6507 -2.0400 19 6 3.7368 5.1303 0.0023 20 6 2.4906 5.9277 -0.4371 21 6 1.3344 5.0047 0.0022 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 0.2143 2.3185 0.0005 26 1 5.1317 2.5757 -0.0008 27 1 5.2339 0.2289 0.4321 28 1 3.7495 -0.7408 0.5879 29 1 3.4490 -0.6761 -1.8727 30 1 4.9335 0.2936 -2.0284 31 1 5.3014 -2.3149 -4.6014 32 1 4.5512 5.2808 -0.7063 33 1 4.0460 5.4326 1.0027 34 1 2.4829 6.0703 -1.5177 35 1 2.4407 6.8851 0.0815 36 1 0.5086 5.0695 -0.7063 37 1 0.9949 5.2717 1.0030 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260346949.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:50:33 Heat of formation + Delta-G solvation = -36.826074 kcal Electronic energy + Delta-G solvation = -17451.022928 eV Core-core repulsion = 14771.453410 eV Total energy + Delta-G solvation = -2679.569518 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.21969 -38.18592 -35.41315 -33.28264 -31.62580 -30.30425 -28.38112 -27.03206 -26.56857 -24.57405 -22.05180 -21.12588 -20.71309 -19.45624 -17.04363 -16.31780 -16.16506 -15.58381 -15.23237 -14.57407 -14.37861 -14.01134 -13.38201 -12.98720 -12.81447 -12.61041 -12.25107 -12.08773 -11.88951 -11.58719 -11.29273 -11.18479 -11.12658 -10.89586 -10.79378 -10.62355 -10.31659 -10.15972 -9.67479 -9.46503 -8.99675 -8.26008 -8.23833 -7.43999 -5.90544 -3.92670 1.73220 1.81185 3.38872 3.42617 3.45510 3.69421 4.09227 4.53060 4.56308 4.68863 5.00834 5.18975 5.22749 5.31739 5.37295 5.41092 5.44761 5.65077 5.67728 5.75030 5.76052 5.80802 5.92417 6.06913 6.12522 6.19190 6.33562 6.42271 6.70863 6.81815 6.93017 7.00904 7.16043 7.30140 7.79662 7.84853 7.98200 8.11769 8.52091 9.14253 9.70189 11.20689 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.027408 B = 0.005471 C = 0.004878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.369945 B = 5116.685347 C = 5738.442344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.301 6.301 3 C 0.127 3.873 4 C -0.197 4.197 5 C -0.083 4.083 6 C -0.136 4.136 7 C -0.073 4.073 8 C -0.085 4.085 9 C -0.069 4.069 10 C 0.033 3.967 11 C -0.517 4.517 12 H 0.054 0.946 13 C 0.056 3.944 14 N -0.896 5.896 15 Si 0.891 3.109 16 H -0.277 1.277 17 H -0.288 1.288 18 H -0.277 1.277 19 C -0.075 4.075 20 C -0.120 4.120 21 C -0.077 4.077 22 H 0.051 0.949 23 H 0.096 0.904 24 H 0.048 0.952 25 H 0.119 0.881 26 H 0.125 0.875 27 H 0.056 0.944 28 H 0.063 0.937 29 H 0.019 0.981 30 H 0.014 0.986 31 H 0.260 0.740 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.069 0.931 37 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.665 13.080 8.205 17.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.213 6.213 3 C 0.082 3.918 4 C -0.216 4.216 5 C -0.083 4.083 6 C -0.136 4.136 7 C -0.091 4.091 8 C -0.086 4.086 9 C -0.106 4.106 10 C -0.004 4.004 11 C -0.556 4.556 12 H 0.073 0.927 13 C -0.144 4.144 14 N -0.536 5.536 15 Si 0.719 3.281 16 H -0.203 1.203 17 H -0.214 1.214 18 H -0.203 1.203 19 C -0.112 4.112 20 C -0.157 4.157 21 C -0.114 4.114 22 H 0.070 0.930 23 H 0.115 0.885 24 H 0.066 0.934 25 H 0.137 0.863 26 H 0.142 0.858 27 H 0.075 0.925 28 H 0.081 0.919 29 H 0.038 0.962 30 H 0.032 0.968 31 H 0.069 0.931 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.088 0.912 37 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -8.588 12.851 8.009 17.408 hybrid contribution 0.217 -0.815 -0.188 0.864 sum -8.370 12.036 7.821 16.616 Atomic orbital electron populations 1.22985 0.79539 1.03564 1.00585 1.86224 1.20257 1.26383 1.88468 1.18707 0.91919 0.83836 0.97328 1.20522 0.99265 0.91278 1.10504 1.20150 0.94339 0.93710 1.00070 1.20376 0.93951 0.94666 1.04650 1.20356 0.99610 0.89938 0.99172 1.19644 0.90797 0.96740 1.01383 1.20652 0.96525 0.91621 1.01841 1.19028 0.97090 0.95419 0.88886 1.21236 1.32493 1.09204 0.92652 0.92737 1.25011 0.96190 0.97547 0.95672 1.69976 1.45974 1.40004 0.97617 0.86675 0.80797 0.83760 0.76851 1.20276 1.21362 1.20277 1.20924 0.98010 0.90832 1.01446 1.22273 0.94360 0.97755 1.01341 1.20977 0.98071 0.90975 1.01418 0.93045 0.88513 0.93357 0.86281 0.85756 0.92526 0.91875 0.96241 0.96787 0.93075 0.91015 0.90902 0.91065 0.90957 0.91216 0.90716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 9.81 101.05 0.99 1.37 16 2 O -0.30 -5.69 9.64 -19.41 -0.19 -5.87 16 3 C 0.13 2.42 6.66 -39.26 -0.26 2.15 16 4 C -0.20 -3.17 9.04 -39.38 -0.36 -3.53 16 5 C -0.08 -1.25 6.13 -104.22 -0.64 -1.89 16 6 C -0.14 -2.14 6.14 -104.16 -0.64 -2.78 16 7 C -0.07 -1.30 9.67 -39.55 -0.38 -1.69 16 8 C -0.09 -1.72 5.14 -104.52 -0.54 -2.26 16 9 C -0.07 -1.56 5.01 -27.88 -0.14 -1.70 16 10 C 0.03 0.90 4.96 -27.88 -0.14 0.76 16 11 C -0.52 -15.23 9.11 -34.44 -0.31 -15.55 16 12 H 0.05 1.55 7.74 -52.48 -0.41 1.14 16 13 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 14 N -0.90 -27.86 13.29 55.43 0.74 -27.12 16 15 Si 0.89 22.22 29.54 -169.99 -5.02 17.20 16 16 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 17 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 18 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 19 C -0.08 -0.90 6.77 -26.84 -0.18 -1.08 16 20 C -0.12 -1.22 7.08 -25.34 -0.18 -1.40 16 21 C -0.08 -0.87 6.77 -26.85 -0.18 -1.05 16 22 H 0.05 0.63 7.66 -51.93 -0.40 0.23 16 23 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 24 H 0.05 0.54 7.66 -51.93 -0.40 0.14 16 25 H 0.12 1.60 6.29 -52.49 -0.33 1.27 16 26 H 0.12 2.07 8.06 -52.49 -0.42 1.65 16 27 H 0.06 1.21 8.05 -51.93 -0.42 0.79 16 28 H 0.06 1.44 7.70 -51.93 -0.40 1.04 16 29 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.26 7.60 8.31 -40.82 -0.34 7.27 16 32 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 37 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 306.27 15.07 4.62 4.62 Total: -1.00 -32.85 306.27 -8.62 -41.48 By element: Atomic # 1 Polarization: 2.46 SS G_CDS: -5.71 Total: -3.25 kcal Atomic # 6 Polarization: -23.99 SS G_CDS: -3.06 Total: -27.05 kcal Atomic # 7 Polarization: -27.86 SS G_CDS: 0.74 Total: -27.12 kcal Atomic # 8 Polarization: -5.69 SS G_CDS: -0.19 Total: -5.87 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -32.85 -8.62 -41.48 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260346949.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.653 kcal (2) G-P(sol) polarization free energy of solvation -32.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds