Wall clock time and date at job start Mon Mar 30 2020 05:50:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35896 * 117.00008 * 2 1 4 4 C 1.38642 * 120.09330 * 0.02562 * 3 2 1 5 5 C 1.38371 * 120.16966 * 179.97438 * 4 3 2 6 6 C 1.38302 * 119.90784 * 359.76525 * 5 4 3 7 7 C 1.38500 * 119.93795 * 0.51517 * 6 5 4 8 8 C 1.38047 * 120.28941 * 359.45950 * 7 6 5 9 9 C 1.50699 * 120.06598 * 180.25860 * 8 7 6 10 10 C 1.53002 * 109.46979 * 265.00336 * 9 8 7 11 11 C 1.50704 * 109.46952 * 179.97438 * 10 9 8 12 12 H 1.08006 * 119.99946 * 359.97438 * 11 10 9 13 13 C 1.37872 * 120.00170 * 180.02562 * 11 10 9 14 14 N 1.31523 * 119.99590 * 359.97438 * 13 11 10 15 15 Si 1.86793 * 120.00348 * 180.02562 * 13 11 10 16 16 H 1.48505 * 109.47315 * 59.99410 * 15 13 11 17 17 H 1.48497 * 109.47584 * 179.97438 * 15 13 11 18 18 H 1.48505 * 109.46983 * 299.99714 * 15 13 11 19 19 C 1.51395 * 109.73306 * 179.86963 * 6 5 4 20 20 C 1.54334 * 105.23430 * 343.14454 * 19 6 5 21 21 C 1.51378 * 130.34277 * 180.02562 * 5 4 3 22 22 H 1.09007 * 109.47027 * 59.99540 * 1 2 3 23 23 H 1.08998 * 109.47401 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.46696 * 300.00318 * 1 2 3 25 25 H 1.07994 * 119.91684 * 359.97191 * 4 3 2 26 26 H 1.08002 * 119.85942 * 179.74145 * 7 6 5 27 27 H 1.09000 * 109.46512 * 24.99902 * 9 8 7 28 28 H 1.08995 * 109.47555 * 144.99982 * 9 8 7 29 29 H 1.08999 * 109.46979 * 299.99703 * 10 9 8 30 30 H 1.09000 * 109.47224 * 59.99946 * 10 9 8 31 31 H 0.96999 * 119.99733 * 180.02562 * 14 13 11 32 32 H 1.08998 * 110.43680 * 224.12007 * 19 6 5 33 33 H 1.08990 * 110.19133 * 102.05232 * 19 6 5 34 34 H 1.08997 * 110.82715 * 267.95357 * 20 19 6 35 35 H 1.09001 * 110.81793 * 144.40379 * 20 19 6 36 36 H 1.09000 * 110.30557 * 316.09124 * 21 5 4 37 37 H 1.09000 * 110.30318 * 78.14234 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2928 2.3748 0.0005 5 6 1.9193 3.6086 0.0011 6 6 3.3005 3.6806 0.0060 7 6 4.0533 2.5180 -0.0004 8 6 3.4311 1.2857 -0.0005 9 6 4.2551 0.0239 -0.0016 10 6 4.4278 -0.4712 -1.4390 11 6 5.2523 -1.7326 -1.4401 12 1 5.6172 -2.1402 -0.5088 13 6 5.5419 -2.3659 -2.6301 14 7 5.0980 -1.8692 -3.7642 15 14 6.5633 -3.9298 -2.6316 16 1 5.8741 -4.9720 -1.8290 17 1 6.7310 -4.4103 -4.0266 18 1 7.8966 -3.6507 -2.0400 19 6 3.7368 5.1303 0.0023 20 6 2.4906 5.9277 -0.4371 21 6 1.3344 5.0047 0.0022 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 0.2143 2.3185 0.0005 26 1 5.1317 2.5757 -0.0008 27 1 5.2339 0.2289 0.4321 28 1 3.7495 -0.7408 0.5879 29 1 3.4490 -0.6761 -1.8727 30 1 4.9335 0.2936 -2.0284 31 1 5.3014 -2.3149 -4.6014 32 1 4.5512 5.2808 -0.7063 33 1 4.0460 5.4326 1.0027 34 1 2.4829 6.0703 -1.5177 35 1 2.4407 6.8851 0.0815 36 1 0.5086 5.0695 -0.7063 37 1 0.9949 5.2717 1.0030 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260346949.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:50:32 Heat of formation + Delta-G solvation = -55.283499 kcal Electronic energy + Delta-G solvation = -17451.823302 eV Core-core repulsion = 14771.453410 eV Total energy + Delta-G solvation = -2680.369892 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.47981 -39.37635 -36.88544 -35.21215 -33.30349 -31.71039 -29.81141 -28.34921 -27.65413 -26.40845 -23.57839 -22.76790 -21.72054 -20.90186 -18.60392 -18.19541 -17.53751 -16.73035 -16.48787 -16.26172 -15.81662 -15.18279 -14.89689 -14.66925 -14.28716 -13.92939 -13.66377 -13.61764 -13.19594 -12.94647 -12.80188 -12.56685 -12.53803 -12.29928 -12.12261 -11.98074 -11.83264 -11.67770 -11.51413 -11.19421 -11.08175 -10.55356 -9.60387 -8.78472 -8.18862 -6.31742 0.40180 0.50551 1.38712 1.43276 1.51134 2.41078 2.48162 2.77696 3.12882 3.51022 3.68249 3.95909 4.18144 4.22067 4.25741 4.36380 4.38237 4.38977 4.62271 4.67133 4.68578 4.75607 4.88560 4.90176 4.97409 5.01433 5.09014 5.18974 5.32028 5.35149 5.42511 5.45657 5.50437 5.70251 5.80052 5.83939 5.96921 6.23362 6.57590 6.84213 7.37094 8.92749 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.027408 B = 0.005471 C = 0.004878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.369945 B = 5116.685347 C = 5738.442344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.337 6.337 3 C 0.109 3.891 4 C -0.198 4.198 5 C -0.081 4.081 6 C -0.146 4.146 7 C -0.085 4.085 8 C -0.127 4.127 9 C -0.052 4.052 10 C 0.045 3.955 11 C -0.544 4.544 12 H 0.061 0.939 13 C -0.001 4.001 14 N -0.935 5.935 15 Si 0.969 3.031 16 H -0.267 1.267 17 H -0.281 1.281 18 H -0.264 1.264 19 C -0.076 4.076 20 C -0.114 4.114 21 C -0.075 4.075 22 H 0.059 0.941 23 H 0.111 0.889 24 H 0.072 0.928 25 H 0.147 0.853 26 H 0.125 0.875 27 H 0.061 0.939 28 H 0.053 0.947 29 H -0.016 1.016 30 H -0.015 1.015 31 H 0.264 0.736 32 H 0.073 0.927 33 H 0.090 0.910 34 H 0.071 0.929 35 H 0.103 0.897 36 H 0.084 0.916 37 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.330 14.514 9.065 19.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.251 6.251 3 C 0.064 3.936 4 C -0.217 4.217 5 C -0.081 4.081 6 C -0.146 4.146 7 C -0.103 4.103 8 C -0.127 4.127 9 C -0.089 4.089 10 C 0.008 3.992 11 C -0.582 4.582 12 H 0.079 0.921 13 C -0.198 4.198 14 N -0.575 5.575 15 Si 0.793 3.207 16 H -0.192 1.192 17 H -0.206 1.206 18 H -0.189 1.189 19 C -0.113 4.113 20 C -0.151 4.151 21 C -0.112 4.112 22 H 0.077 0.923 23 H 0.129 0.871 24 H 0.091 0.909 25 H 0.164 0.836 26 H 0.143 0.857 27 H 0.080 0.920 28 H 0.072 0.928 29 H 0.002 0.998 30 H 0.003 0.997 31 H 0.072 0.928 32 H 0.092 0.908 33 H 0.108 0.892 34 H 0.090 0.910 35 H 0.121 0.879 36 H 0.103 0.897 37 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -9.261 14.296 8.885 19.212 hybrid contribution 0.345 -1.189 -0.461 1.321 sum -8.916 13.107 8.424 17.951 Atomic orbital electron populations 1.23296 0.76936 1.05129 1.02091 1.86159 1.23184 1.27090 1.88697 1.18907 0.91811 0.84903 0.97941 1.20813 1.00550 0.90712 1.09624 1.20790 0.94465 0.95370 0.97501 1.20858 0.94486 0.95869 1.03371 1.20481 1.00019 0.90324 0.99486 1.19547 0.91669 0.96267 1.05261 1.20299 0.97352 0.93027 0.98223 1.18807 0.94421 0.94439 0.91506 1.21665 1.33120 1.10151 0.93293 0.92108 1.26032 0.97320 1.01471 0.95003 1.70128 1.47167 1.41824 0.98417 0.85444 0.79172 0.78767 0.77309 1.19154 1.20596 1.18887 1.21059 0.99198 0.88367 1.02689 1.22322 0.92438 0.98521 1.01804 1.21117 0.98741 0.88158 1.03195 0.92263 0.87113 0.90922 0.83551 0.85683 0.92032 0.92812 0.99789 0.99669 0.92760 0.90799 0.89163 0.91027 0.87854 0.89726 0.88519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.52 9.81 113.37 1.11 1.63 16 2 O -0.34 -13.26 9.64 -92.38 -0.89 -14.15 16 3 C 0.11 4.28 6.66 22.48 0.15 4.42 16 4 C -0.20 -6.19 9.04 22.40 0.20 -5.99 16 5 C -0.08 -2.29 6.13 -19.60 -0.12 -2.41 16 6 C -0.15 -4.43 6.14 -19.57 -0.12 -4.55 16 7 C -0.09 -3.15 9.67 22.29 0.22 -2.93 16 8 C -0.13 -5.39 5.14 -19.80 -0.10 -5.49 16 9 C -0.05 -2.48 5.01 29.85 0.15 -2.34 16 10 C 0.05 2.66 4.96 29.85 0.15 2.81 16 11 C -0.54 -33.21 9.11 25.60 0.23 -32.97 16 12 H 0.06 3.53 7.74 -2.91 -0.02 3.51 16 13 C 0.00 -0.05 5.46 84.65 0.46 0.41 16 14 N -0.94 -59.88 13.29 21.45 0.28 -59.59 16 15 Si 0.97 46.07 29.54 68.60 2.03 48.10 16 16 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 17 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 18 H -0.26 -11.95 7.11 99.48 0.71 -11.24 16 19 C -0.08 -1.63 6.77 30.52 0.21 -1.42 16 20 C -0.11 -1.86 7.08 31.50 0.22 -1.63 16 21 C -0.08 -1.40 6.77 30.52 0.21 -1.19 16 22 H 0.06 1.42 7.66 -2.38 -0.02 1.40 16 23 H 0.11 2.48 8.14 -2.39 -0.02 2.46 16 24 H 0.07 1.50 7.66 -2.38 -0.02 1.49 16 25 H 0.15 3.61 6.29 -2.91 -0.02 3.59 16 26 H 0.13 4.38 8.06 -2.91 -0.02 4.36 16 27 H 0.06 2.79 8.05 -2.39 -0.02 2.77 16 28 H 0.05 2.61 7.70 -2.39 -0.02 2.59 16 29 H -0.02 -1.06 8.14 -2.39 -0.02 -1.07 16 30 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 31 H 0.26 15.76 8.31 -92.71 -0.77 14.99 16 32 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 Total: -1.00 -74.33 306.27 5.42 -68.90 By element: Atomic # 1 Polarization: 7.36 SS G_CDS: 1.04 Total: 8.40 kcal Atomic # 6 Polarization: -54.63 SS G_CDS: 2.97 Total: -51.66 kcal Atomic # 7 Polarization: -59.88 SS G_CDS: 0.28 Total: -59.59 kcal Atomic # 8 Polarization: -13.26 SS G_CDS: -0.89 Total: -14.15 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 2.03 Total: 48.10 kcal Total: -74.33 5.42 -68.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260346949.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.621 kcal (2) G-P(sol) polarization free energy of solvation -74.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds