Wall clock time and date at job start Mon Mar 30 2020 05:53:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42899 * 113.99865 * 2 1 4 4 C 1.50701 * 109.47013 * 179.97438 * 3 2 1 5 5 C 1.38258 * 119.99786 * 0.02562 * 4 3 2 6 6 C 1.38214 * 119.99675 * 179.97438 * 5 4 3 7 7 C 1.38261 * 120.00070 * 0.02747 * 6 5 4 8 8 C 1.38207 * 120.00177 * 359.96967 * 7 6 5 9 9 C 1.38211 * 120.00055 * 179.72479 * 4 3 2 10 10 C 1.50698 * 120.00049 * 0.02562 * 9 4 3 11 11 H 1.09003 * 109.47111 * 0.02562 * 10 9 4 12 12 C 1.50702 * 109.47404 * 119.99399 * 10 9 4 13 13 H 1.08000 * 119.99400 * 64.60212 * 12 10 9 14 14 C 1.37872 * 120.00471 * 244.60006 * 12 10 9 15 15 N 1.31513 * 119.99674 * 184.62638 * 14 12 10 16 16 Si 1.86802 * 119.99986 * 4.63342 * 14 12 10 17 17 H 1.48505 * 109.47079 * 84.53280 * 16 14 12 18 18 H 1.48499 * 109.46861 * 204.53391 * 16 14 12 19 19 H 1.48500 * 109.47050 * 324.53443 * 16 14 12 20 20 C 1.52994 * 109.47408 * 240.00079 * 10 9 4 21 21 C 1.53005 * 117.50131 * 123.98871 * 20 10 9 22 22 C 1.52998 * 60.00042 * 252.51115 * 21 20 10 23 23 H 1.08992 * 109.47013 * 60.00180 * 1 2 3 24 24 H 1.09008 * 109.47197 * 180.02562 * 1 2 3 25 25 H 1.08994 * 109.47120 * 299.99851 * 1 2 3 26 26 H 1.08994 * 109.47038 * 299.99652 * 3 2 1 27 27 H 1.09001 * 109.47107 * 59.99972 * 3 2 1 28 28 H 1.07996 * 120.00408 * 0.02562 * 5 4 3 29 29 H 1.08002 * 120.00306 * 179.97438 * 6 5 4 30 30 H 1.08002 * 120.00033 * 179.97438 * 7 6 5 31 31 H 1.07996 * 120.00367 * 179.97438 * 8 7 6 32 32 H 0.97008 * 119.99382 * 180.02562 * 15 14 12 33 33 H 1.09004 * 115.55185 * 269.69658 * 20 10 9 34 34 H 1.08991 * 117.49591 * 0.02562 * 21 20 10 35 35 H 1.08999 * 117.49646 * 145.02366 * 21 20 10 36 36 H 1.09003 * 117.50004 * 252.50983 * 22 21 20 37 37 H 1.08994 * 117.51888 * 107.48106 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 0.0006 5 6 4.1071 -0.0617 0.0006 6 6 5.4849 -0.1708 0.0006 7 6 6.2686 0.9682 0.0013 8 6 5.6742 2.2160 0.0013 9 6 4.2959 2.3251 -0.0050 10 6 3.6479 3.6856 -0.0112 11 1 2.5638 3.5717 -0.0098 12 6 4.0735 4.4504 1.2156 13 1 5.1095 4.7250 1.3482 14 6 3.1403 4.7997 2.1685 15 7 3.4939 5.5446 3.1930 16 14 1.3739 4.2145 2.0046 17 1 1.2499 2.8489 2.5746 18 1 0.4754 5.1410 2.7391 19 1 0.9922 4.1886 0.5697 20 6 4.0792 4.4503 -1.2641 21 6 2.9767 4.9741 -2.1867 22 6 3.8338 3.7827 -2.6188 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8899 26 1 1.6886 1.8463 -0.8900 27 1 1.6886 1.8464 0.8900 28 1 3.4950 -0.9515 -0.0004 29 1 5.9494 -1.1458 0.0010 30 1 7.3452 0.8830 0.0018 31 1 6.2863 3.1057 0.0023 32 1 2.8374 5.7900 3.8637 33 1 4.9779 5.0580 -1.1580 34 1 1.9441 4.7743 -1.9007 35 1 3.1499 5.9266 -2.6876 36 1 4.5709 3.9513 -3.4039 37 1 3.3654 2.7985 -2.6173 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260366247.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:32 Heat of formation + Delta-G solvation = -1.913413 kcal Electronic energy + Delta-G solvation = -18286.103527 eV Core-core repulsion = 15608.047936 eV Total energy + Delta-G solvation = -2678.055591 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.30968 -37.33619 -36.53174 -33.04413 -31.68552 -30.88315 -27.83281 -26.83089 -25.12779 -23.27439 -21.76299 -21.61225 -20.43832 -18.87479 -17.20603 -16.19163 -16.09560 -15.74217 -14.92659 -14.74420 -14.11528 -13.93331 -13.69628 -13.27634 -12.90058 -12.66960 -12.32782 -12.18677 -11.74370 -11.54966 -11.10677 -11.01112 -10.94339 -10.56749 -10.39932 -10.28313 -9.91029 -9.68962 -9.55539 -9.10504 -8.97174 -8.63563 -8.04114 -7.72883 -6.18359 -4.16226 2.04151 2.20706 3.15476 3.18199 3.24848 3.96913 4.28494 4.48641 4.53756 5.14897 5.27374 5.41828 5.45221 5.50817 5.56463 5.67717 5.69498 5.72686 5.75067 5.77412 5.86306 5.92994 6.16897 6.23007 6.31562 6.38593 6.52898 6.68658 6.74247 6.76201 6.88529 7.07077 7.11418 7.24831 7.47316 7.48752 7.65137 7.76873 8.41890 8.86806 9.43184 10.94743 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.014606 B = 0.011463 C = 0.009463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1916.567413 B = 2441.968580 C = 2958.281922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.388 6.388 3 C 0.100 3.900 4 C -0.110 4.110 5 C -0.099 4.099 6 C -0.151 4.151 7 C -0.124 4.124 8 C -0.103 4.103 9 C -0.019 4.019 10 C 0.058 3.942 11 H 0.051 0.949 12 C -0.496 4.496 13 H 0.080 0.920 14 C 0.076 3.924 15 N -0.893 5.893 16 Si 0.863 3.137 17 H -0.270 1.270 18 H -0.287 1.287 19 H -0.262 1.262 20 C -0.109 4.109 21 C -0.187 4.187 22 C -0.197 4.197 23 H 0.040 0.960 24 H 0.085 0.915 25 H 0.039 0.961 26 H 0.058 0.942 27 H 0.061 0.939 28 H 0.120 0.880 29 H 0.110 0.890 30 H 0.111 0.889 31 H 0.120 0.880 32 H 0.265 0.735 33 H 0.099 0.901 34 H 0.083 0.917 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.431 -8.112 -8.239 11.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.307 6.307 3 C 0.024 3.976 4 C -0.110 4.110 5 C -0.117 4.117 6 C -0.169 4.169 7 C -0.142 4.142 8 C -0.121 4.121 9 C -0.020 4.020 10 C 0.040 3.960 11 H 0.069 0.931 12 C -0.533 4.533 13 H 0.098 0.902 14 C -0.127 4.127 15 N -0.530 5.530 16 Si 0.691 3.309 17 H -0.197 1.197 18 H -0.213 1.213 19 H -0.187 1.187 20 C -0.127 4.127 21 C -0.224 4.224 22 C -0.234 4.234 23 H 0.058 0.942 24 H 0.103 0.897 25 H 0.058 0.942 26 H 0.076 0.924 27 H 0.079 0.921 28 H 0.138 0.862 29 H 0.128 0.872 30 H 0.129 0.871 31 H 0.138 0.862 32 H 0.075 0.925 33 H 0.117 0.883 34 H 0.102 0.898 35 H 0.103 0.897 36 H 0.100 0.900 37 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -2.392 -8.166 -8.047 11.711 hybrid contribution -1.200 0.008 0.150 1.209 sum -3.591 -8.158 -7.897 11.909 Atomic orbital electron populations 1.22721 0.81560 1.02385 1.00023 1.87803 1.19163 1.28247 1.95475 1.21476 0.91522 0.84013 1.00596 1.19412 0.92980 0.93801 1.04803 1.20773 0.94329 0.96927 0.99707 1.20873 0.93763 0.97785 1.04518 1.21064 0.98980 0.92989 1.01132 1.20848 0.94402 0.96825 1.00074 1.20259 0.93581 0.95350 0.92812 1.18163 0.96086 0.88303 0.93492 0.93121 1.20854 0.97016 1.33446 1.02016 0.90244 1.25035 0.98148 0.94317 0.95155 1.69870 1.34908 1.35989 1.12262 0.87180 0.86140 0.79114 0.78430 1.19650 1.21322 1.18734 1.22601 0.99079 1.01059 0.90009 1.22887 0.96734 0.97404 1.05405 1.22912 1.03737 0.96776 1.00001 0.94170 0.89696 0.94224 0.92443 0.92074 0.86207 0.87233 0.87135 0.86203 0.92452 0.88283 0.89835 0.89736 0.89972 0.89764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 11.01 101.05 1.11 1.51 16 2 O -0.39 -6.77 9.18 -35.23 -0.32 -7.10 16 3 C 0.10 1.93 4.79 36.01 0.17 2.10 16 4 C -0.11 -2.23 5.88 -104.62 -0.62 -2.85 16 5 C -0.10 -1.83 9.38 -39.58 -0.37 -2.20 16 6 C -0.15 -2.56 10.05 -39.58 -0.40 -2.96 16 7 C -0.12 -2.15 10.05 -39.58 -0.40 -2.55 16 8 C -0.10 -2.06 8.93 -39.58 -0.35 -2.41 16 9 C -0.02 -0.41 4.21 -104.62 -0.44 -0.86 16 10 C 0.06 1.32 1.95 -92.93 -0.18 1.14 16 11 H 0.05 1.16 2.33 -51.93 -0.12 1.04 16 12 C -0.50 -13.31 8.43 -34.44 -0.29 -13.60 16 13 H 0.08 2.30 8.06 -52.49 -0.42 1.87 16 14 C 0.08 2.12 5.47 -17.82 -0.10 2.02 16 15 N -0.89 -26.58 13.96 55.43 0.77 -25.81 16 16 Si 0.86 20.82 25.00 -169.99 -4.25 16.57 16 17 H -0.27 -6.43 6.54 56.52 0.37 -6.06 16 18 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 19 H -0.26 -5.89 6.22 56.52 0.35 -5.54 16 20 C -0.11 -2.18 4.87 -90.62 -0.44 -2.62 16 21 C -0.19 -3.33 10.18 -26.73 -0.27 -3.60 16 22 C -0.20 -3.37 9.78 -26.73 -0.26 -3.63 16 23 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 24 H 0.08 0.91 8.14 -51.92 -0.42 0.49 16 25 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.06 1.06 7.84 -51.93 -0.41 0.65 16 27 H 0.06 1.30 4.42 -51.93 -0.23 1.07 16 28 H 0.12 2.06 7.01 -52.49 -0.37 1.69 16 29 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 30 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 31 H 0.12 2.35 8.05 -52.49 -0.42 1.93 16 32 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 33 H 0.10 2.00 8.07 -51.93 -0.42 1.58 16 34 H 0.08 1.51 8.03 -51.93 -0.42 1.09 16 35 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 36 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 37 H 0.08 1.46 8.02 -51.93 -0.42 1.05 16 LS Contribution 299.94 15.07 4.52 4.52 Total: -1.00 -29.14 299.94 -7.51 -36.65 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: -5.40 Total: 5.66 kcal Atomic # 6 Polarization: -27.66 SS G_CDS: -2.83 Total: -30.50 kcal Atomic # 7 Polarization: -26.58 SS G_CDS: 0.77 Total: -25.81 kcal Atomic # 8 Polarization: -6.77 SS G_CDS: -0.32 Total: -7.10 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -4.25 Total: 16.57 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -29.14 -7.51 -36.65 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260366247.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.737 kcal (2) G-P(sol) polarization free energy of solvation -29.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds