Wall clock time and date at job start Mon Mar 30 2020 05:53:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42899 * 113.99865 * 2 1 4 4 C 1.50701 * 109.47013 * 179.97438 * 3 2 1 5 5 C 1.38258 * 119.99786 * 0.02562 * 4 3 2 6 6 C 1.38214 * 119.99675 * 179.97438 * 5 4 3 7 7 C 1.38261 * 120.00070 * 0.02747 * 6 5 4 8 8 C 1.38207 * 120.00177 * 359.96967 * 7 6 5 9 9 C 1.38211 * 120.00055 * 179.72479 * 4 3 2 10 10 C 1.50698 * 120.00049 * 0.02562 * 9 4 3 11 11 H 1.09003 * 109.47111 * 0.02562 * 10 9 4 12 12 C 1.50702 * 109.47404 * 119.99399 * 10 9 4 13 13 H 1.08000 * 119.99400 * 64.60212 * 12 10 9 14 14 C 1.37872 * 120.00471 * 244.60006 * 12 10 9 15 15 N 1.31513 * 119.99674 * 184.62638 * 14 12 10 16 16 Si 1.86802 * 119.99986 * 4.63342 * 14 12 10 17 17 H 1.48505 * 109.47079 * 84.53280 * 16 14 12 18 18 H 1.48499 * 109.46861 * 204.53391 * 16 14 12 19 19 H 1.48500 * 109.47050 * 324.53443 * 16 14 12 20 20 C 1.52994 * 109.47408 * 240.00079 * 10 9 4 21 21 C 1.53005 * 117.50131 * 123.98871 * 20 10 9 22 22 C 1.52998 * 60.00042 * 252.51115 * 21 20 10 23 23 H 1.08992 * 109.47013 * 60.00180 * 1 2 3 24 24 H 1.09008 * 109.47197 * 180.02562 * 1 2 3 25 25 H 1.08994 * 109.47120 * 299.99851 * 1 2 3 26 26 H 1.08994 * 109.47038 * 299.99652 * 3 2 1 27 27 H 1.09001 * 109.47107 * 59.99972 * 3 2 1 28 28 H 1.07996 * 120.00408 * 0.02562 * 5 4 3 29 29 H 1.08002 * 120.00306 * 179.97438 * 6 5 4 30 30 H 1.08002 * 120.00033 * 179.97438 * 7 6 5 31 31 H 1.07996 * 120.00367 * 179.97438 * 8 7 6 32 32 H 0.97008 * 119.99382 * 180.02562 * 15 14 12 33 33 H 1.09004 * 115.55185 * 269.69658 * 20 10 9 34 34 H 1.08991 * 117.49591 * 0.02562 * 21 20 10 35 35 H 1.08999 * 117.49646 * 145.02366 * 21 20 10 36 36 H 1.09003 * 117.50004 * 252.50983 * 22 21 20 37 37 H 1.08994 * 117.51888 * 107.48106 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 0.0006 5 6 4.1071 -0.0617 0.0006 6 6 5.4849 -0.1708 0.0006 7 6 6.2686 0.9682 0.0013 8 6 5.6742 2.2160 0.0013 9 6 4.2959 2.3251 -0.0050 10 6 3.6479 3.6856 -0.0112 11 1 2.5638 3.5717 -0.0098 12 6 4.0735 4.4504 1.2156 13 1 5.1095 4.7250 1.3482 14 6 3.1403 4.7997 2.1685 15 7 3.4939 5.5446 3.1930 16 14 1.3739 4.2145 2.0046 17 1 1.2499 2.8489 2.5746 18 1 0.4754 5.1410 2.7391 19 1 0.9922 4.1886 0.5697 20 6 4.0792 4.4503 -1.2641 21 6 2.9767 4.9741 -2.1867 22 6 3.8338 3.7827 -2.6188 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8899 26 1 1.6886 1.8463 -0.8900 27 1 1.6886 1.8464 0.8900 28 1 3.4950 -0.9515 -0.0004 29 1 5.9494 -1.1458 0.0010 30 1 7.3452 0.8830 0.0018 31 1 6.2863 3.1057 0.0023 32 1 2.8374 5.7900 3.8637 33 1 4.9779 5.0580 -1.1580 34 1 1.9441 4.7743 -1.9007 35 1 3.1499 5.9266 -2.6876 36 1 4.5709 3.9513 -3.4039 37 1 3.3654 2.7985 -2.6173 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260366247.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:32 Heat of formation + Delta-G solvation = -18.082203 kcal Electronic energy + Delta-G solvation = -18286.804659 eV Core-core repulsion = 15608.047936 eV Total energy + Delta-G solvation = -2678.756723 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.79148 -38.66965 -37.99033 -34.96582 -33.28440 -32.42365 -29.51843 -28.09439 -26.44731 -25.13983 -23.20011 -23.06460 -21.87971 -20.47741 -19.18613 -17.64312 -17.46026 -17.13158 -16.55828 -16.17607 -15.63267 -15.46503 -15.13667 -14.88845 -14.53923 -14.09407 -14.04596 -13.56910 -13.28325 -12.97391 -12.85217 -12.43191 -12.32250 -12.17652 -11.94891 -11.82730 -11.70338 -11.39813 -10.90709 -10.81230 -10.68779 -10.49651 -9.50510 -9.24456 -8.32568 -6.33306 0.58193 0.73296 1.21023 1.24086 1.32314 2.26086 2.71298 2.92894 3.03978 3.20433 3.87760 4.02513 4.15062 4.19847 4.27177 4.29366 4.33167 4.34323 4.44546 4.49387 4.51584 4.73928 4.76631 4.77448 4.82176 4.97811 5.03515 5.21869 5.27140 5.32819 5.38349 5.50214 5.60981 5.67160 5.80098 5.95049 6.15297 6.27905 6.36470 6.71634 7.29115 8.84263 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.014606 B = 0.011463 C = 0.009463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1916.567413 B = 2441.968580 C = 2958.281922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.398 6.398 3 C 0.104 3.896 4 C -0.127 4.127 5 C -0.104 4.104 6 C -0.141 4.141 7 C -0.120 4.120 8 C -0.122 4.122 9 C -0.044 4.044 10 C 0.064 3.936 11 H 0.048 0.952 12 C -0.491 4.491 13 H 0.039 0.961 14 C 0.017 3.983 15 N -0.945 5.945 16 Si 0.917 3.083 17 H -0.266 1.266 18 H -0.287 1.287 19 H -0.237 1.237 20 C -0.140 4.140 21 C -0.182 4.182 22 C -0.169 4.169 23 H 0.054 0.946 24 H 0.114 0.886 25 H 0.036 0.964 26 H 0.064 0.936 27 H 0.040 0.960 28 H 0.134 0.866 29 H 0.148 0.852 30 H 0.141 0.859 31 H 0.108 0.892 32 H 0.265 0.735 33 H 0.086 0.914 34 H 0.082 0.918 35 H 0.104 0.896 36 H 0.105 0.895 37 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.238 -10.449 -10.231 14.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.317 6.317 3 C 0.028 3.972 4 C -0.127 4.127 5 C -0.122 4.122 6 C -0.159 4.159 7 C -0.138 4.138 8 C -0.141 4.141 9 C -0.044 4.044 10 C 0.045 3.955 11 H 0.066 0.934 12 C -0.529 4.529 13 H 0.058 0.942 14 C -0.180 4.180 15 N -0.586 5.586 16 Si 0.742 3.258 17 H -0.192 1.192 18 H -0.214 1.214 19 H -0.160 1.160 20 C -0.158 4.158 21 C -0.219 4.219 22 C -0.206 4.206 23 H 0.072 0.928 24 H 0.132 0.868 25 H 0.055 0.945 26 H 0.082 0.918 27 H 0.057 0.943 28 H 0.152 0.848 29 H 0.165 0.835 30 H 0.159 0.841 31 H 0.126 0.874 32 H 0.074 0.926 33 H 0.104 0.896 34 H 0.100 0.900 35 H 0.122 0.878 36 H 0.123 0.877 37 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -3.202 -10.519 -10.071 14.911 hybrid contribution -0.831 0.659 0.733 1.289 sum -4.033 -9.860 -9.338 14.166 Atomic orbital electron populations 1.23031 0.79480 1.04576 1.00591 1.87774 1.21408 1.26982 1.95516 1.21305 0.91232 0.84880 0.99794 1.19620 0.93666 0.94195 1.05208 1.21035 0.95318 0.96628 0.99180 1.21308 0.93212 0.99238 1.02134 1.21397 1.00737 0.92023 0.99670 1.20932 0.94116 0.97821 1.01183 1.20144 0.94294 0.94882 0.95087 1.18007 0.95886 0.89037 0.92541 0.93395 1.21089 0.95149 1.33030 1.03606 0.94223 1.25815 1.02543 0.94733 0.94949 1.70022 1.36380 1.38448 1.13704 0.86304 0.81088 0.78522 0.79846 1.19194 1.21388 1.16042 1.22356 1.00010 1.02796 0.90681 1.23008 0.95980 0.98794 1.04094 1.22914 1.03247 0.96469 0.97969 0.92761 0.86776 0.94496 0.91779 0.94268 0.84796 0.83459 0.84088 0.87394 0.92602 0.89588 0.89986 0.87761 0.87666 0.89724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.46 11.01 113.37 1.25 1.71 16 2 O -0.40 -12.90 9.18 -148.98 -1.37 -14.27 16 3 C 0.10 3.86 4.79 71.24 0.34 4.20 16 4 C -0.13 -4.98 5.88 -19.87 -0.12 -5.09 16 5 C -0.10 -3.55 9.38 22.27 0.21 -3.34 16 6 C -0.14 -4.29 10.05 22.27 0.22 -4.07 16 7 C -0.12 -3.92 10.05 22.27 0.22 -3.69 16 8 C -0.12 -4.85 8.93 22.27 0.20 -4.65 16 9 C -0.04 -1.85 4.21 -19.87 -0.08 -1.93 16 10 C 0.06 2.92 1.95 -12.29 -0.02 2.90 16 11 H 0.05 2.18 2.33 -2.39 -0.01 2.17 16 12 C -0.49 -27.48 8.43 25.60 0.22 -27.27 16 13 H 0.04 2.46 8.06 -2.91 -0.02 2.43 16 14 C 0.02 0.97 5.47 84.65 0.46 1.43 16 15 N -0.95 -58.87 13.96 21.45 0.30 -58.57 16 16 Si 0.92 43.59 25.00 68.60 1.72 45.31 16 17 H -0.27 -12.37 6.54 99.48 0.65 -11.71 16 18 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 19 H -0.24 -10.11 6.22 99.48 0.62 -9.49 16 20 C -0.14 -5.57 4.87 -10.79 -0.05 -5.63 16 21 C -0.18 -6.12 10.18 30.60 0.31 -5.81 16 22 C -0.17 -5.41 9.78 30.59 0.30 -5.11 16 23 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 24 H 0.11 2.04 8.14 -2.38 -0.02 2.02 16 25 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 26 H 0.06 2.24 7.84 -2.39 -0.02 2.22 16 27 H 0.04 1.62 4.42 -2.39 -0.01 1.61 16 28 H 0.13 4.17 7.01 -2.91 -0.02 4.15 16 29 H 0.15 3.37 8.06 -2.91 -0.02 3.34 16 30 H 0.14 3.66 8.06 -2.91 -0.02 3.63 16 31 H 0.11 4.40 8.05 -2.91 -0.02 4.38 16 32 H 0.26 15.54 8.31 -92.70 -0.77 14.77 16 33 H 0.09 3.59 8.07 -2.38 -0.02 3.57 16 34 H 0.08 2.78 8.03 -2.39 -0.02 2.77 16 35 H 0.10 3.07 8.14 -2.39 -0.02 3.05 16 36 H 0.11 2.88 8.14 -2.39 -0.02 2.86 16 37 H 0.08 2.73 8.02 -2.39 -0.02 2.71 16 Total: -1.00 -65.25 299.94 5.01 -60.25 By element: Atomic # 1 Polarization: 22.74 SS G_CDS: 0.90 Total: 23.64 kcal Atomic # 6 Polarization: -59.81 SS G_CDS: 3.46 Total: -56.36 kcal Atomic # 7 Polarization: -58.87 SS G_CDS: 0.30 Total: -58.57 kcal Atomic # 8 Polarization: -12.90 SS G_CDS: -1.37 Total: -14.27 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 1.72 Total: 45.31 kcal Total: -65.25 5.01 -60.25 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260366247.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.164 kcal (2) G-P(sol) polarization free energy of solvation -65.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds