Wall clock time and date at job start Mon Mar 30 2020 05:44:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 109.67454 * 2 1 4 4 C 1.53409 * 109.67576 * 239.49246 * 2 1 3 5 5 C 1.53072 * 108.29963 * 175.61157 * 4 2 1 6 6 C 1.50767 * 109.67074 * 48.27635 * 5 4 2 7 7 C 1.38503 * 118.76450 * 162.13416 * 6 5 4 8 8 C 1.38112 * 120.31551 * 179.34519 * 7 6 5 9 9 C 1.50699 * 120.00741 * 180.23674 * 8 7 6 10 10 C 1.53001 * 109.47174 * 90.00388 * 9 8 7 11 11 C 1.50699 * 109.46794 * 180.02562 * 10 9 8 12 12 H 1.07993 * 120.00489 * 359.97438 * 11 10 9 13 13 C 1.37877 * 119.99776 * 179.97438 * 11 10 9 14 14 N 1.31516 * 119.99911 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 120.00043 * 179.97438 * 13 11 10 16 16 H 1.48492 * 109.47179 * 359.97438 * 15 13 11 17 17 H 1.48502 * 109.47254 * 120.00002 * 15 13 11 18 18 H 1.48502 * 109.47181 * 239.99686 * 15 13 11 19 19 C 1.38290 * 119.98134 * 0.26019 * 8 7 6 20 20 C 1.37974 * 119.95979 * 0.09242 * 19 8 7 21 21 C 1.38383 * 121.40371 * 342.19709 * 6 5 4 22 22 O 1.35837 * 121.79867 * 0.80081 * 21 6 5 23 23 H 1.09009 * 109.47014 * 180.50873 * 1 2 3 24 24 H 1.08999 * 109.46987 * 300.50567 * 1 2 3 25 25 H 1.08999 * 109.47127 * 60.50710 * 1 2 3 26 26 H 1.08998 * 109.69830 * 55.91381 * 4 2 1 27 27 H 1.08996 * 109.70174 * 295.31496 * 4 2 1 28 28 H 1.08996 * 109.44300 * 288.21578 * 5 4 2 29 29 H 1.09000 * 109.43865 * 168.33438 * 5 4 2 30 30 H 1.08002 * 119.84455 * 359.62692 * 7 6 5 31 31 H 1.08999 * 109.46728 * 209.99895 * 9 8 7 32 32 H 1.09000 * 109.46926 * 329.99891 * 9 8 7 33 33 H 1.08999 * 109.46890 * 299.99407 * 10 9 8 34 34 H 1.08994 * 109.47022 * 59.99537 * 10 9 8 35 35 H 0.97003 * 119.99504 * 180.02562 * 14 13 11 36 36 H 1.07998 * 120.01740 * 180.02562 * 19 8 7 37 37 H 1.07997 * 119.88905 * 180.02562 * 20 19 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8969 1.0263 0.0000 4 6 2.0465 -0.7333 -1.2445 5 6 3.5728 -0.6196 -1.2706 6 6 4.1316 -0.9793 0.0827 7 6 5.4740 -1.3051 0.1843 8 6 6.0225 -1.6265 1.4104 9 6 7.4850 -1.9748 1.5138 10 6 8.2951 -0.7028 1.7723 11 6 9.7577 -1.0510 1.8750 12 1 10.0775 -2.0769 1.7672 13 6 10.6876 -0.0598 2.1066 14 7 10.2983 1.1896 2.2375 15 14 12.5006 -0.4914 2.2347 16 1 12.6750 -1.9548 2.0531 17 1 13.2573 0.2322 1.1817 18 1 13.0106 -0.0948 3.5718 19 6 5.2291 -1.6292 2.5431 20 6 3.8896 -1.3126 2.4468 21 6 3.3331 -0.9904 1.2129 22 8 2.0086 -0.6946 1.1563 23 1 -0.3633 -1.0277 0.0091 24 1 -0.3633 0.5217 0.8854 25 1 -0.3633 0.5059 -0.8945 26 1 1.6287 -0.2750 -2.1409 27 1 1.7571 -1.7832 -1.1990 28 1 3.8562 0.4029 -1.5198 29 1 3.9745 -1.3000 -2.0214 30 1 6.0958 -1.3034 -0.6988 31 1 7.6347 -2.6742 2.3362 32 1 7.8160 -2.4333 0.5820 33 1 8.1454 -0.0034 0.9498 34 1 7.9640 -0.2443 2.7040 35 1 10.9527 1.8869 2.4001 36 1 5.6575 -1.8801 3.5022 37 1 3.2711 -1.3147 3.3322 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260374415.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:13 Heat of formation + Delta-G solvation = -62.687357 kcal Electronic energy + Delta-G solvation = -17201.061588 eV Core-core repulsion = 14520.370640 eV Total energy + Delta-G solvation = -2680.690947 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.63421 -39.00736 -35.79808 -35.38132 -33.91682 -32.42310 -30.62225 -29.11956 -26.67912 -24.98804 -23.86702 -23.56579 -22.24723 -20.34707 -18.81785 -18.52850 -17.38777 -16.56490 -16.44968 -15.79118 -15.42982 -15.09764 -14.96443 -14.62524 -14.39717 -14.10556 -13.90431 -13.68869 -13.25677 -13.23613 -12.93883 -12.85130 -12.77873 -12.28667 -12.25550 -11.87774 -11.67029 -11.59092 -11.44908 -11.20368 -11.06893 -10.56623 -9.70348 -8.90687 -8.19428 -6.31910 0.39390 0.48818 1.40453 1.40809 1.54543 2.30417 2.41298 2.80507 3.13071 3.65370 3.75980 3.80602 3.91238 4.11473 4.17650 4.32697 4.38202 4.46157 4.58193 4.60639 4.68503 4.82406 4.88311 4.90380 4.94615 5.03963 5.13190 5.17422 5.19410 5.25295 5.37658 5.48743 5.52030 5.57758 5.83627 5.89699 5.90607 6.23228 6.56014 6.85387 7.37642 8.92147 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.047066 B = 0.004169 C = 0.004083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 594.763873 B = 6714.034676 C = 6855.224524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.072 3.928 3 H 0.069 0.931 4 C -0.144 4.144 5 C -0.080 4.080 6 C -0.163 4.163 7 C -0.097 4.097 8 C -0.112 4.112 9 C -0.061 4.061 10 C 0.036 3.964 11 C -0.543 4.543 12 H 0.063 0.937 13 C -0.002 4.002 14 N -0.934 5.934 15 Si 0.967 3.033 16 H -0.260 1.260 17 H -0.278 1.278 18 H -0.278 1.278 19 C -0.098 4.098 20 C -0.154 4.154 21 C 0.108 3.892 22 O -0.329 6.329 23 H 0.065 0.935 24 H 0.064 0.936 25 H 0.103 0.897 26 H 0.113 0.887 27 H 0.073 0.927 28 H 0.081 0.919 29 H 0.092 0.908 30 H 0.126 0.874 31 H 0.063 0.937 32 H 0.062 0.938 33 H -0.012 1.012 34 H -0.012 1.012 35 H 0.263 0.737 36 H 0.132 0.868 37 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.902 -3.729 -6.809 20.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.016 3.984 3 H 0.087 0.913 4 C -0.182 4.182 5 C -0.117 4.117 6 C -0.164 4.164 7 C -0.115 4.115 8 C -0.112 4.112 9 C -0.098 4.098 10 C -0.001 4.001 11 C -0.581 4.581 12 H 0.081 0.919 13 C -0.199 4.199 14 N -0.575 5.575 15 Si 0.792 3.208 16 H -0.184 1.184 17 H -0.203 1.203 18 H -0.204 1.204 19 C -0.116 4.116 20 C -0.172 4.172 21 C 0.063 3.937 22 O -0.244 6.244 23 H 0.085 0.915 24 H 0.083 0.917 25 H 0.121 0.879 26 H 0.131 0.869 27 H 0.092 0.908 28 H 0.099 0.901 29 H 0.110 0.890 30 H 0.144 0.856 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.007 0.993 34 H 0.007 0.993 35 H 0.072 0.928 36 H 0.150 0.850 37 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -19.007 -3.608 -6.655 20.459 hybrid contribution 1.361 0.251 0.213 1.401 sum -17.645 -3.357 -6.441 19.082 Atomic orbital electron populations 1.21810 0.90073 1.03621 1.04055 1.22862 0.96875 0.94886 0.83737 0.91275 1.22264 0.94629 1.02041 0.99236 1.20577 0.95956 1.02797 0.92337 1.20079 0.94159 1.06056 0.96082 1.20959 0.94176 0.98820 0.97550 1.20138 0.96179 1.00974 0.93945 1.20493 0.89630 0.98266 1.01402 1.18925 0.93832 0.92756 0.94549 1.21747 0.93203 0.94309 1.48829 0.91868 1.26016 1.04347 0.94784 0.94758 1.70128 1.35851 1.01115 1.50378 0.85363 0.78804 0.78870 0.77792 1.18401 1.20331 1.20392 1.20985 0.92866 0.99201 0.98547 1.20731 0.95004 1.05236 0.96241 1.18712 0.83397 0.98176 0.93413 1.86016 1.20217 1.73322 1.44846 0.91545 0.91719 0.87889 0.86912 0.90807 0.90051 0.88957 0.85618 0.91833 0.91916 0.99348 0.99313 0.92794 0.85016 0.84085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.87 9.58 71.98 0.69 -1.18 16 2 C 0.07 1.43 3.44 30.73 0.11 1.54 16 3 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 4 C -0.14 -2.51 5.48 30.76 0.17 -2.34 16 5 C -0.08 -1.79 5.86 29.89 0.18 -1.61 16 6 C -0.16 -5.05 5.75 -19.75 -0.11 -5.16 16 7 C -0.10 -3.43 9.32 22.30 0.21 -3.22 16 8 C -0.11 -4.37 5.13 -19.88 -0.10 -4.47 16 9 C -0.06 -2.64 5.28 29.85 0.16 -2.48 16 10 C 0.04 2.00 4.96 29.85 0.15 2.15 16 11 C -0.54 -31.54 9.11 25.60 0.23 -31.31 16 12 H 0.06 3.50 7.74 -2.91 -0.02 3.47 16 13 C 0.00 -0.09 5.46 84.65 0.46 0.37 16 14 N -0.93 -58.09 13.29 21.45 0.28 -57.80 16 15 Si 0.97 44.77 29.54 68.60 2.03 46.80 16 16 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 17 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 18 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 19 C -0.10 -3.51 9.70 22.22 0.22 -3.29 16 20 C -0.15 -5.00 9.94 22.43 0.22 -4.78 16 21 C 0.11 3.43 6.47 22.52 0.15 3.57 16 22 O -0.33 -9.18 9.93 -91.72 -0.91 -10.09 16 23 H 0.07 0.90 8.14 -2.38 -0.02 0.88 16 24 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 25 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 26 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 27 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 28 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 29 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.13 4.20 8.06 -2.91 -0.02 4.17 16 31 H 0.06 2.65 8.09 -2.39 -0.02 2.63 16 32 H 0.06 2.61 8.09 -2.39 -0.02 2.59 16 33 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 34 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 35 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 36 H 0.13 4.41 8.06 -2.91 -0.02 4.39 16 37 H 0.14 3.95 8.06 -2.91 -0.02 3.93 16 Total: -1.00 -68.48 307.36 5.14 -63.34 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: 1.02 Total: 9.96 kcal Atomic # 6 Polarization: -54.92 SS G_CDS: 2.72 Total: -52.21 kcal Atomic # 7 Polarization: -58.09 SS G_CDS: 0.28 Total: -57.80 kcal Atomic # 8 Polarization: -9.18 SS G_CDS: -0.91 Total: -10.09 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.80 kcal Total: -68.48 5.14 -63.34 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260374415.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.648 kcal (2) G-P(sol) polarization free energy of solvation -68.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds