Wall clock time and date at job start Mon Mar 30 2020 05:53:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35904 * 116.99954 * 2 1 4 4 C 1.38755 * 120.05525 * 359.97438 * 3 2 1 5 5 C 1.38122 * 119.93972 * 179.74158 * 4 3 2 6 6 C 1.38292 * 120.05853 * 0.55818 * 5 4 3 7 7 C 1.38243 * 120.10717 * 359.44262 * 6 5 4 8 8 C 1.38163 * 120.05811 * 0.27953 * 7 6 5 9 9 C 1.50703 * 120.02814 * 179.97438 * 8 7 6 10 10 H 1.09000 * 110.01572 * 187.44995 * 9 8 7 11 11 C 1.54263 * 110.03293 * 308.83866 * 9 8 7 12 12 C 1.54883 * 104.19722 * 142.89391 * 11 9 8 13 13 C 1.54883 * 102.75115 * 322.05938 * 12 11 9 14 14 C 1.53872 * 110.03234 * 66.00752 * 9 8 7 15 15 H 1.08996 * 110.03620 * 121.43357 * 14 9 8 16 16 C 1.50700 * 110.03323 * 359.97438 * 14 9 8 17 17 H 1.07995 * 120.00193 * 4.92651 * 16 14 9 18 18 C 1.37881 * 119.99896 * 184.92384 * 16 14 9 19 19 N 1.31515 * 120.00129 * 0.02562 * 18 16 14 20 20 Si 1.86800 * 119.99669 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.47192 * 0.02562 * 20 18 16 22 22 H 1.48505 * 109.47001 * 120.00140 * 20 18 16 23 23 H 1.48505 * 109.47061 * 239.99752 * 20 18 16 24 24 H 1.09006 * 109.47067 * 59.99720 * 1 2 3 25 25 H 1.08995 * 109.47193 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46797 * 300.00154 * 1 2 3 27 27 H 1.07998 * 120.02968 * 0.02562 * 4 3 2 28 28 H 1.08007 * 119.97156 * 180.27120 * 5 4 3 29 29 H 1.08001 * 119.94425 * 179.71625 * 6 5 4 30 30 H 1.08001 * 119.96998 * 180.29842 * 7 6 5 31 31 H 1.08997 * 110.48787 * 261.57646 * 11 9 8 32 32 H 1.09006 * 110.48555 * 24.21132 * 11 9 8 33 33 H 1.09000 * 110.75324 * 80.37218 * 12 11 9 34 34 H 1.09002 * 110.75562 * 203.74414 * 12 11 9 35 35 H 1.08993 * 110.49139 * 156.61966 * 13 12 11 36 36 H 1.09002 * 110.49005 * 279.26718 * 13 12 11 37 37 H 0.96994 * 119.99680 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 -0.0005 5 6 1.9209 3.6047 0.0049 6 6 3.3020 3.6758 -0.0009 7 6 4.0560 2.5171 -0.0004 8 6 3.4311 1.2848 0.0000 9 6 4.2538 0.0221 0.0000 10 1 3.6065 -0.8448 -0.1325 11 6 5.3034 0.0753 -1.1292 12 6 6.5519 -0.6094 -0.5198 13 6 6.5313 -0.1143 0.9476 14 6 5.0344 -0.0984 1.3205 15 1 4.7666 -1.0244 1.8294 16 6 4.7361 1.0837 2.2063 17 1 3.9973 1.8115 1.9050 18 6 5.4064 1.2360 3.4016 19 7 6.3064 0.3500 3.7684 20 14 5.0360 2.7009 4.4999 21 1 3.9913 3.5440 3.8651 22 1 4.5502 2.2207 5.8185 23 1 6.2718 3.5023 4.6897 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 0.2128 2.3204 -0.0005 28 1 1.3340 4.5114 0.0089 29 1 3.7923 4.6381 -0.0013 30 1 5.1344 2.5752 0.0000 31 1 4.9534 -0.4764 -2.0017 32 1 5.5263 1.1088 -1.3945 33 1 6.4570 -1.6944 -0.5628 34 1 7.4591 -0.2795 -1.0261 35 1 7.0773 -0.8043 1.5908 36 1 6.9525 0.8886 1.0179 37 1 6.7782 0.4574 4.6090 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260387093.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:03 Heat of formation + Delta-G solvation = -20.181371 kcal Electronic energy + Delta-G solvation = -18544.874244 eV Core-core repulsion = 15866.026494 eV Total energy + Delta-G solvation = -2678.847750 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.88236 -37.60647 -36.18278 -32.36203 -31.12603 -29.50225 -27.95560 -27.17802 -26.27321 -23.95206 -21.73342 -21.38417 -19.48284 -18.50244 -17.55963 -16.21948 -15.56783 -15.27684 -14.88355 -14.47659 -14.19147 -13.78007 -13.51457 -13.09236 -12.46912 -12.35720 -12.22191 -11.60147 -11.47169 -11.00169 -10.95497 -10.86565 -10.80430 -10.48121 -10.37128 -9.95088 -9.74551 -9.66484 -9.48131 -9.11725 -8.60067 -8.26990 -7.79429 -7.34857 -5.90435 -3.89516 2.06051 2.14725 3.34379 3.43024 3.49156 3.80489 4.46950 4.53538 5.25170 5.36227 5.39734 5.44097 5.46205 5.66935 5.68356 5.81256 5.84254 5.90358 6.04050 6.21671 6.37232 6.48378 6.51533 6.69700 6.77716 6.83697 6.86905 7.00047 7.07324 7.12357 7.27878 7.39628 7.47951 7.57651 7.85145 8.01164 8.03453 8.13564 8.58472 9.13555 9.73590 11.19132 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.017094 B = 0.010902 C = 0.008569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1637.565858 B = 2567.616336 C = 3266.681944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.312 6.312 3 C 0.112 3.888 4 C -0.217 4.217 5 C -0.104 4.104 6 C -0.169 4.169 7 C -0.045 4.045 8 C -0.048 4.048 9 C -0.049 4.049 10 H 0.064 0.936 11 C -0.112 4.112 12 C -0.134 4.134 13 C -0.088 4.088 14 C 0.053 3.947 15 H 0.025 0.975 16 C -0.511 4.511 17 H 0.075 0.925 18 C 0.062 3.938 19 N -0.891 5.891 20 Si 0.877 3.123 21 H -0.271 1.271 22 H -0.287 1.287 23 H -0.286 1.286 24 H 0.047 0.953 25 H 0.092 0.908 26 H 0.050 0.950 27 H 0.115 0.885 28 H 0.111 0.889 29 H 0.113 0.887 30 H 0.130 0.870 31 H 0.046 0.954 32 H 0.060 0.940 33 H 0.051 0.949 34 H 0.047 0.953 35 H 0.056 0.944 36 H 0.052 0.948 37 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.179 2.029 -8.833 11.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.226 6.226 3 C 0.067 3.933 4 C -0.236 4.236 5 C -0.122 4.122 6 C -0.187 4.187 7 C -0.063 4.063 8 C -0.049 4.049 9 C -0.068 4.068 10 H 0.082 0.918 11 C -0.150 4.150 12 C -0.172 4.172 13 C -0.126 4.126 14 C 0.035 3.965 15 H 0.043 0.957 16 C -0.548 4.548 17 H 0.093 0.907 18 C -0.139 4.139 19 N -0.530 5.530 20 Si 0.706 3.294 21 H -0.196 1.196 22 H -0.213 1.213 23 H -0.212 1.212 24 H 0.065 0.935 25 H 0.110 0.890 26 H 0.068 0.932 27 H 0.133 0.867 28 H 0.129 0.871 29 H 0.131 0.869 30 H 0.148 0.852 31 H 0.065 0.935 32 H 0.079 0.921 33 H 0.070 0.930 34 H 0.065 0.935 35 H 0.075 0.925 36 H 0.070 0.930 37 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -6.981 1.795 -8.678 11.281 hybrid contribution -0.482 1.020 0.986 1.498 sum -7.463 2.816 -7.693 11.081 Atomic orbital electron populations 1.22915 0.79867 1.03035 1.00648 1.86086 1.20025 1.27314 1.89181 1.18824 0.92082 0.83625 0.98760 1.20968 0.98970 0.92642 1.11019 1.20658 0.94651 0.96275 1.00595 1.20931 0.93797 0.98194 1.05771 1.20809 1.00258 0.90680 0.94512 1.19107 0.89514 0.96366 0.99896 1.20855 0.95126 0.93162 0.97631 0.91761 1.22442 0.95810 1.00011 0.96697 1.22648 0.96279 0.98957 0.99298 1.22244 0.99481 0.99899 0.90974 1.19260 0.90333 0.97205 0.89692 0.95716 1.21831 1.21545 1.08383 1.03075 0.90684 1.24971 0.95354 0.95898 0.97690 1.70011 1.25679 1.34943 1.22364 0.86742 0.78183 0.83569 0.80937 1.19555 1.21342 1.21237 0.93459 0.88965 0.93160 0.86682 0.87125 0.86925 0.85176 0.93541 0.92085 0.92996 0.93470 0.92549 0.92955 0.93460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 9.81 101.05 0.99 1.39 16 2 O -0.31 -5.76 9.30 -19.44 -0.18 -5.94 16 3 C 0.11 2.18 6.66 -39.22 -0.26 1.92 16 4 C -0.22 -3.75 9.04 -39.43 -0.36 -4.11 16 5 C -0.10 -1.74 10.04 -39.60 -0.40 -2.14 16 6 C -0.17 -3.03 10.04 -39.56 -0.40 -3.43 16 7 C -0.04 -0.89 6.02 -39.61 -0.24 -1.13 16 8 C -0.05 -1.01 3.38 -104.47 -0.35 -1.36 16 9 C -0.05 -1.05 3.08 -90.65 -0.28 -1.33 16 10 H 0.06 1.39 7.07 -51.93 -0.37 1.02 16 11 C -0.11 -2.09 6.23 -25.08 -0.16 -2.25 16 12 C -0.13 -2.56 6.91 -24.75 -0.17 -2.73 16 13 C -0.09 -2.05 5.18 -25.07 -0.13 -2.18 16 14 C 0.05 1.33 2.89 -90.65 -0.26 1.07 16 15 H 0.02 0.68 8.14 -51.93 -0.42 0.26 16 16 C -0.51 -13.76 7.02 -34.44 -0.24 -14.00 16 17 H 0.08 2.02 4.26 -52.49 -0.22 1.79 16 18 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 19 N -0.89 -25.73 12.08 55.43 0.67 -25.06 16 20 Si 0.88 21.76 29.54 -169.99 -5.02 16.74 16 21 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 23 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 24 H 0.05 0.53 7.66 -51.93 -0.40 0.13 16 25 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 26 H 0.05 0.63 7.66 -51.93 -0.40 0.23 16 27 H 0.12 1.66 6.30 -52.49 -0.33 1.33 16 28 H 0.11 1.53 8.06 -52.48 -0.42 1.11 16 29 H 0.11 1.76 8.06 -52.49 -0.42 1.33 16 30 H 0.13 2.63 7.21 -52.49 -0.38 2.25 16 31 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.06 1.10 6.45 -51.93 -0.33 0.77 16 33 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.06 1.41 7.83 -51.93 -0.41 1.01 16 36 H 0.05 1.29 7.84 -51.93 -0.41 0.88 16 37 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 291.26 15.07 4.39 4.39 Total: -1.00 -29.68 291.26 -7.83 -37.51 By element: Atomic # 1 Polarization: 6.35 SS G_CDS: -5.34 Total: 1.01 kcal Atomic # 6 Polarization: -26.30 SS G_CDS: -2.35 Total: -28.64 kcal Atomic # 7 Polarization: -25.73 SS G_CDS: 0.67 Total: -25.06 kcal Atomic # 8 Polarization: -5.76 SS G_CDS: -0.18 Total: -5.94 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -29.68 -7.83 -37.51 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260387093.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.326 kcal (2) G-P(sol) polarization free energy of solvation -29.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds