Wall clock time and date at job start Mon Mar 30 2020 05:53:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35904 * 116.99954 * 2 1 4 4 C 1.38755 * 120.05525 * 359.97438 * 3 2 1 5 5 C 1.38122 * 119.93972 * 179.74158 * 4 3 2 6 6 C 1.38292 * 120.05853 * 0.55818 * 5 4 3 7 7 C 1.38243 * 120.10717 * 359.44262 * 6 5 4 8 8 C 1.38163 * 120.05811 * 0.27953 * 7 6 5 9 9 C 1.50703 * 120.02814 * 179.97438 * 8 7 6 10 10 H 1.09000 * 110.01572 * 187.44995 * 9 8 7 11 11 C 1.54263 * 110.03293 * 308.83866 * 9 8 7 12 12 C 1.54883 * 104.19722 * 142.89391 * 11 9 8 13 13 C 1.54883 * 102.75115 * 322.05938 * 12 11 9 14 14 C 1.53872 * 110.03234 * 66.00752 * 9 8 7 15 15 H 1.08996 * 110.03620 * 121.43357 * 14 9 8 16 16 C 1.50700 * 110.03323 * 359.97438 * 14 9 8 17 17 H 1.07995 * 120.00193 * 4.92651 * 16 14 9 18 18 C 1.37881 * 119.99896 * 184.92384 * 16 14 9 19 19 N 1.31515 * 120.00129 * 0.02562 * 18 16 14 20 20 Si 1.86800 * 119.99669 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.47192 * 0.02562 * 20 18 16 22 22 H 1.48505 * 109.47001 * 120.00140 * 20 18 16 23 23 H 1.48505 * 109.47061 * 239.99752 * 20 18 16 24 24 H 1.09006 * 109.47067 * 59.99720 * 1 2 3 25 25 H 1.08995 * 109.47193 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46797 * 300.00154 * 1 2 3 27 27 H 1.07998 * 120.02968 * 0.02562 * 4 3 2 28 28 H 1.08007 * 119.97156 * 180.27120 * 5 4 3 29 29 H 1.08001 * 119.94425 * 179.71625 * 6 5 4 30 30 H 1.08001 * 119.96998 * 180.29842 * 7 6 5 31 31 H 1.08997 * 110.48787 * 261.57646 * 11 9 8 32 32 H 1.09006 * 110.48555 * 24.21132 * 11 9 8 33 33 H 1.09000 * 110.75324 * 80.37218 * 12 11 9 34 34 H 1.09002 * 110.75562 * 203.74414 * 12 11 9 35 35 H 1.08993 * 110.49139 * 156.61966 * 13 12 11 36 36 H 1.09002 * 110.49005 * 279.26718 * 13 12 11 37 37 H 0.96994 * 119.99680 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 -0.0005 5 6 1.9209 3.6047 0.0049 6 6 3.3020 3.6758 -0.0009 7 6 4.0560 2.5171 -0.0004 8 6 3.4311 1.2848 0.0000 9 6 4.2538 0.0221 0.0000 10 1 3.6065 -0.8448 -0.1325 11 6 5.3034 0.0753 -1.1292 12 6 6.5519 -0.6094 -0.5198 13 6 6.5313 -0.1143 0.9476 14 6 5.0344 -0.0984 1.3205 15 1 4.7666 -1.0244 1.8294 16 6 4.7361 1.0837 2.2063 17 1 3.9973 1.8115 1.9050 18 6 5.4064 1.2360 3.4016 19 7 6.3064 0.3500 3.7684 20 14 5.0360 2.7009 4.4999 21 1 3.9913 3.5440 3.8651 22 1 4.5502 2.2207 5.8185 23 1 6.2718 3.5023 4.6897 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 0.2128 2.3204 -0.0005 28 1 1.3340 4.5114 0.0089 29 1 3.7923 4.6381 -0.0013 30 1 5.1344 2.5752 0.0000 31 1 4.9534 -0.4764 -2.0017 32 1 5.5263 1.1088 -1.3945 33 1 6.4570 -1.6944 -0.5628 34 1 7.4591 -0.2795 -1.0261 35 1 7.0773 -0.8043 1.5908 36 1 6.9525 0.8886 1.0179 37 1 6.7782 0.4574 4.6090 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260387093.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:03 Heat of formation + Delta-G solvation = -35.850630 kcal Electronic energy + Delta-G solvation = -18545.553714 eV Core-core repulsion = 15866.026494 eV Total energy + Delta-G solvation = -2679.527220 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.31048 -39.13412 -37.65326 -34.42304 -32.61711 -30.86390 -29.84884 -28.49310 -27.67861 -25.92928 -23.20216 -22.77918 -21.21100 -20.21181 -19.02960 -17.95631 -17.08181 -16.71635 -16.40934 -16.14624 -15.88631 -15.19996 -15.06551 -14.42239 -14.26487 -13.99049 -13.75306 -13.32647 -12.88999 -12.79664 -12.58390 -12.38555 -12.29557 -12.17814 -11.81664 -11.60055 -11.40639 -11.32298 -11.25045 -10.98117 -10.56496 -10.39234 -9.28009 -8.79339 -8.03116 -6.06773 0.65332 0.73710 1.36536 1.39862 1.50831 2.47264 2.59120 3.04389 3.30125 3.95073 4.03242 4.17690 4.27773 4.31512 4.40409 4.45282 4.47987 4.64416 4.73128 4.77148 4.84529 5.00696 5.02100 5.07748 5.15668 5.19252 5.33745 5.36128 5.47312 5.58620 5.63011 5.76091 5.82641 5.92428 6.00175 6.06543 6.14992 6.52386 6.70067 7.03985 7.58684 9.06523 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.017094 B = 0.010902 C = 0.008569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1637.565858 B = 2567.616336 C = 3266.681944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.339 6.339 3 C 0.097 3.903 4 C -0.217 4.217 5 C -0.099 4.099 6 C -0.176 4.176 7 C -0.061 4.061 8 C -0.079 4.079 9 C -0.044 4.044 10 H 0.054 0.946 11 C -0.104 4.104 12 C -0.123 4.123 13 C -0.080 4.080 14 C 0.047 3.953 15 H -0.018 1.018 16 C -0.509 4.509 17 H 0.079 0.921 18 C 0.010 3.990 19 N -0.924 5.924 20 Si 0.934 3.066 21 H -0.265 1.265 22 H -0.289 1.289 23 H -0.282 1.282 24 H 0.068 0.932 25 H 0.113 0.887 26 H 0.055 0.945 27 H 0.146 0.854 28 H 0.148 0.852 29 H 0.135 0.865 30 H 0.117 0.883 31 H 0.071 0.929 32 H 0.067 0.933 33 H 0.061 0.939 34 H 0.071 0.929 35 H 0.027 0.973 36 H 0.033 0.967 37 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.897 3.618 -10.164 13.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.253 6.253 3 C 0.053 3.947 4 C -0.235 4.235 5 C -0.117 4.117 6 C -0.194 4.194 7 C -0.079 4.079 8 C -0.080 4.080 9 C -0.062 4.062 10 H 0.073 0.927 11 C -0.141 4.141 12 C -0.161 4.161 13 C -0.118 4.118 14 C 0.028 3.972 15 H 0.000 1.000 16 C -0.547 4.547 17 H 0.096 0.904 18 C -0.188 4.188 19 N -0.565 5.565 20 Si 0.761 3.239 21 H -0.189 1.189 22 H -0.216 1.216 23 H -0.208 1.208 24 H 0.087 0.913 25 H 0.132 0.868 26 H 0.073 0.927 27 H 0.164 0.836 28 H 0.165 0.835 29 H 0.153 0.847 30 H 0.135 0.865 31 H 0.090 0.910 32 H 0.086 0.914 33 H 0.079 0.921 34 H 0.090 0.910 35 H 0.046 0.954 36 H 0.052 0.948 37 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -8.715 3.389 -10.022 13.707 hybrid contribution -0.063 0.498 1.382 1.470 sum -8.778 3.887 -8.641 12.916 Atomic orbital electron populations 1.23253 0.77199 1.05022 1.01849 1.86047 1.22881 1.27269 1.89128 1.19043 0.92022 0.84869 0.98796 1.21355 1.00539 0.91967 1.09659 1.21121 0.94452 0.97566 0.98570 1.21252 0.94631 0.98367 1.05169 1.20808 0.99928 0.91425 0.95751 1.19148 0.90525 0.96082 1.02220 1.20672 0.95405 0.93744 0.96393 0.92705 1.22396 0.94460 1.00765 0.96488 1.22571 0.97859 0.99551 0.96078 1.22012 0.97864 0.98200 0.93723 1.19231 0.91993 0.94548 0.91387 1.00008 1.22158 1.20767 1.08671 1.03126 0.90361 1.25683 0.95605 0.98266 0.99221 1.70147 1.26946 1.36652 1.22736 0.85844 0.78121 0.80866 0.79049 1.18885 1.21579 1.20783 0.91340 0.86834 0.92660 0.83628 0.83463 0.84722 0.86468 0.91030 0.91433 0.92064 0.90985 0.95362 0.94843 0.93739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.50 9.81 113.37 1.11 1.61 16 2 O -0.34 -12.14 9.30 -92.47 -0.86 -13.00 16 3 C 0.10 3.68 6.66 22.51 0.15 3.83 16 4 C -0.22 -6.82 9.04 22.37 0.20 -6.61 16 5 C -0.10 -2.98 10.04 22.25 0.22 -2.75 16 6 C -0.18 -5.90 10.04 22.28 0.22 -5.67 16 7 C -0.06 -2.40 6.02 22.25 0.13 -2.26 16 8 C -0.08 -3.27 3.38 -19.77 -0.07 -3.34 16 9 C -0.04 -1.89 3.08 -10.82 -0.03 -1.92 16 10 H 0.05 2.41 7.07 -2.39 -0.02 2.40 16 11 C -0.10 -3.76 6.23 31.67 0.20 -3.56 16 12 C -0.12 -4.62 6.91 31.88 0.22 -4.40 16 13 C -0.08 -3.86 5.18 31.67 0.16 -3.70 16 14 C 0.05 2.43 2.89 -10.81 -0.03 2.40 16 15 H -0.02 -1.08 8.14 -2.39 -0.02 -1.10 16 16 C -0.51 -28.11 7.02 25.60 0.18 -27.93 16 17 H 0.08 4.24 4.26 -2.91 -0.01 4.23 16 18 C 0.01 0.54 5.30 84.66 0.45 0.99 16 19 N -0.92 -55.34 12.08 21.45 0.26 -55.08 16 20 Si 0.93 45.19 29.54 68.60 2.03 47.21 16 21 H -0.26 -12.40 7.11 99.48 0.71 -11.69 16 22 H -0.29 -13.99 7.11 99.48 0.71 -13.29 16 23 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 24 H 0.07 1.31 7.66 -2.38 -0.02 1.30 16 25 H 0.11 2.13 8.14 -2.39 -0.02 2.11 16 26 H 0.05 1.24 7.66 -2.38 -0.02 1.22 16 27 H 0.15 3.58 6.30 -2.91 -0.02 3.56 16 28 H 0.15 3.31 8.06 -2.91 -0.02 3.28 16 29 H 0.13 3.80 8.06 -2.91 -0.02 3.78 16 30 H 0.12 4.77 7.21 -2.91 -0.02 4.75 16 31 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 32 H 0.07 2.36 6.45 -2.38 -0.02 2.34 16 33 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 34 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 35 H 0.03 1.48 7.83 -2.39 -0.02 1.46 16 36 H 0.03 1.70 7.84 -2.39 -0.02 1.68 16 37 H 0.25 14.59 8.31 -92.71 -0.77 13.81 16 Total: -1.00 -65.84 291.26 5.60 -60.24 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: 1.05 Total: 13.94 kcal Atomic # 6 Polarization: -56.44 SS G_CDS: 3.12 Total: -53.32 kcal Atomic # 7 Polarization: -55.34 SS G_CDS: 0.26 Total: -55.08 kcal Atomic # 8 Polarization: -12.14 SS G_CDS: -0.86 Total: -13.00 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.21 kcal Total: -65.84 5.60 -60.24 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260387093.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.391 kcal (2) G-P(sol) polarization free energy of solvation -65.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds