Wall clock time and date at job start Mon Mar 30 2020 05:48:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.47057 * 2 1 4 4 C 1.50695 * 109.47558 * 239.99952 * 2 1 3 5 5 H 1.07998 * 120.00326 * 240.00361 * 4 2 1 6 6 C 1.37884 * 119.99851 * 59.99925 * 4 2 1 7 7 N 1.31513 * 119.99937 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 120.00037 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.46983 * 359.97438 * 8 6 4 10 10 H 1.48493 * 109.47213 * 119.99923 * 8 6 4 11 11 H 1.48507 * 109.46976 * 239.99945 * 8 6 4 12 12 C 1.50704 * 109.46987 * 119.99573 * 2 1 3 13 13 C 1.38234 * 120.00347 * 240.00069 * 12 2 1 14 14 C 1.38231 * 120.00046 * 180.02562 * 13 12 2 15 15 C 1.38231 * 119.99865 * 359.97438 * 14 13 12 16 16 C 1.50703 * 119.99914 * 179.97438 * 15 14 13 17 17 H 1.09005 * 110.83049 * 3.64570 * 16 15 14 18 18 C 1.54807 * 110.90909 * 240.00277 * 16 15 14 19 19 C 1.54106 * 104.18688 * 220.91968 * 18 16 15 20 20 O 1.43739 * 107.29313 * 357.97161 * 19 18 16 21 21 C 1.44380 * 106.97820 * 26.50894 * 20 19 18 22 22 C 1.38235 * 120.00455 * 0.25637 * 15 14 13 23 23 C 1.38235 * 119.99554 * 60.03041 * 12 2 1 24 24 H 1.09006 * 109.47394 * 59.99908 * 1 2 3 25 25 H 1.09002 * 109.47057 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47492 * 299.99737 * 1 2 3 27 27 H 0.97000 * 120.00309 * 179.97438 * 7 6 4 28 28 H 1.08003 * 119.99900 * 0.02562 * 13 12 2 29 29 H 1.08004 * 120.00085 * 179.97438 * 14 13 12 30 30 H 1.08997 * 110.48888 * 102.24425 * 18 16 15 31 31 H 1.09000 * 110.48626 * 339.59653 * 18 16 15 32 32 H 1.09004 * 109.87710 * 117.39475 * 19 18 16 33 33 H 1.08997 * 109.87906 * 238.39454 * 19 18 16 34 34 H 1.08998 * 110.61673 * 78.44262 * 21 20 19 35 35 H 1.08994 * 110.62020 * 201.27896 * 21 20 19 36 36 H 1.08002 * 120.00294 * 179.72874 * 22 15 14 37 37 H 1.07995 * 120.00209 * 359.97438 * 23 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3215 -1.1202 -4.0079 9 1 3.1466 -2.2868 -3.6037 10 1 1.1663 -1.5866 -4.8160 11 1 3.1468 -0.1871 -4.8164 12 6 2.0323 -0.7103 1.2306 13 6 2.8270 -0.0385 2.1405 14 6 3.2881 -0.6903 3.2689 15 6 2.9541 -2.0137 3.4877 16 6 3.4573 -2.7245 4.7176 17 1 4.0136 -2.0414 5.3597 18 6 4.3227 -3.9490 4.3328 19 6 3.8972 -5.0415 5.3330 20 8 2.9272 -4.4564 6.2178 21 6 2.2882 -3.3837 5.4927 22 6 2.1634 -2.6870 2.5754 23 6 1.6988 -2.0340 1.4490 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 0.7087 1.1613 -3.4844 28 1 3.0876 0.9956 1.9698 29 1 3.9094 -0.1656 3.9797 30 1 5.3819 -3.7187 4.4472 31 1 4.1076 -4.2623 3.3112 32 1 3.4524 -5.8807 4.7982 33 1 4.7630 -5.3813 5.9012 34 1 1.5434 -3.7780 4.8015 35 1 1.8322 -2.6729 6.1818 36 1 1.9060 -3.7222 2.7441 37 1 1.0780 -2.5588 0.7381 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260392508.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:48:13 Heat of formation + Delta-G solvation = -40.478513 kcal Electronic energy + Delta-G solvation = -17429.481470 eV Core-core repulsion = 14749.753571 eV Total energy + Delta-G solvation = -2679.727900 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.88904 -38.30916 -34.76334 -32.76069 -30.92852 -30.28542 -29.46090 -27.24603 -25.14703 -23.25349 -22.38482 -22.15782 -20.46171 -19.38362 -16.70906 -16.45330 -16.17199 -15.18061 -15.07181 -14.48217 -14.17854 -14.03228 -13.47160 -12.89728 -12.84574 -12.68409 -12.48238 -11.89622 -11.57028 -11.52401 -11.26466 -11.05644 -10.94523 -10.78181 -10.62097 -10.44097 -10.25703 -10.04002 -9.75355 -9.40696 -9.00994 -8.40558 -8.28681 -7.70281 -6.03848 -4.10625 1.99703 2.04364 3.26610 3.34963 3.39198 3.88117 4.31267 4.44328 4.67802 4.74119 4.98458 5.05818 5.22914 5.27096 5.34732 5.50139 5.53272 5.64870 5.71340 5.77355 5.91741 5.96606 5.98752 6.23920 6.29814 6.59264 6.65324 6.78050 6.83385 6.96987 7.10172 7.18037 7.20977 7.35021 7.66848 7.73030 7.95179 8.07095 8.36866 8.92281 9.54155 11.01817 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.036129 B = 0.004966 C = 0.004691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.808610 B = 5636.751027 C = 5967.548008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.068 3.932 3 H 0.034 0.966 4 C -0.506 4.506 5 H 0.057 0.943 6 C 0.061 3.939 7 N -0.890 5.890 8 Si 0.892 3.108 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.284 1.284 12 C -0.028 4.028 13 C -0.130 4.130 14 C -0.117 4.117 15 C -0.110 4.110 16 C -0.072 4.072 17 H 0.086 0.914 18 C -0.150 4.150 19 C 0.047 3.953 20 O -0.383 6.383 21 C 0.053 3.947 22 C -0.121 4.121 23 C -0.108 4.108 24 H 0.085 0.915 25 H 0.028 0.972 26 H 0.008 0.992 27 H 0.260 0.740 28 H 0.115 0.885 29 H 0.110 0.890 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.057 0.943 33 H 0.080 0.920 34 H 0.066 0.934 35 H 0.092 0.908 36 H 0.109 0.891 37 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.919 -6.873 12.729 14.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.050 3.950 3 H 0.052 0.948 4 C -0.544 4.544 5 H 0.076 0.924 6 C -0.140 4.140 7 N -0.529 5.529 8 Si 0.720 3.280 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.210 1.210 12 C -0.028 4.028 13 C -0.148 4.148 14 C -0.135 4.135 15 C -0.110 4.110 16 C -0.090 4.090 17 H 0.105 0.895 18 C -0.188 4.188 19 C -0.030 4.030 20 O -0.302 6.302 21 C -0.024 4.024 22 C -0.139 4.139 23 C -0.126 4.126 24 H 0.104 0.896 25 H 0.047 0.953 26 H 0.027 0.973 27 H 0.070 0.930 28 H 0.133 0.867 29 H 0.128 0.872 30 H 0.095 0.905 31 H 0.100 0.900 32 H 0.075 0.925 33 H 0.099 0.901 34 H 0.084 0.916 35 H 0.111 0.889 36 H 0.127 0.873 37 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 3.797 -6.834 12.805 15.003 hybrid contribution 0.438 -0.340 -1.211 1.332 sum 4.235 -7.175 11.594 14.277 Atomic orbital electron populations 1.21781 0.97602 0.99266 1.00265 1.17924 0.92904 0.95470 0.88712 0.94778 1.21144 1.31099 1.12338 0.89843 0.92449 1.24963 0.95045 0.95002 0.98959 1.69893 1.36703 1.22927 1.23327 0.86531 0.78668 0.79749 0.83067 1.19776 1.20983 1.21002 1.20709 0.92758 0.93848 0.95526 1.21119 0.99286 0.99922 0.94495 1.20861 1.00642 0.94061 0.97897 1.19265 1.01274 0.94413 0.96095 1.21553 0.96068 0.96455 0.94970 0.89529 1.23075 1.00678 0.94595 1.00446 1.23159 0.92188 0.95794 0.91876 1.88834 1.53823 1.49542 1.38033 1.23724 0.94845 0.88520 0.95265 1.20853 0.99025 0.98993 0.95003 1.21055 1.00159 0.94933 0.96484 0.89628 0.95299 0.97277 0.92990 0.86674 0.87234 0.90528 0.90006 0.92504 0.90125 0.91606 0.88944 0.87309 0.86059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.13 8.78 37.16 0.33 -2.81 16 2 C 0.07 1.68 2.48 -92.93 -0.23 1.45 16 3 H 0.03 0.90 7.88 -51.93 -0.41 0.49 16 4 C -0.51 -13.61 8.24 -34.44 -0.28 -13.89 16 5 H 0.06 1.55 7.60 -52.49 -0.40 1.15 16 6 C 0.06 1.67 5.30 -17.82 -0.09 1.58 16 7 N -0.89 -24.97 11.32 55.43 0.63 -24.35 16 8 Si 0.89 21.02 29.54 -169.99 -5.02 16.00 16 9 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 12 C -0.03 -0.60 4.74 -104.62 -0.50 -1.10 16 13 C -0.13 -2.46 9.67 -39.59 -0.38 -2.84 16 14 C -0.12 -1.88 9.69 -39.59 -0.38 -2.26 16 15 C -0.11 -1.67 4.95 -104.62 -0.52 -2.19 16 16 C -0.07 -0.89 3.34 -89.76 -0.30 -1.19 16 17 H 0.09 1.01 7.96 -51.93 -0.41 0.59 16 18 C -0.15 -1.67 6.50 -25.20 -0.16 -1.84 16 19 C 0.05 0.49 7.70 37.74 0.29 0.78 16 20 O -0.38 -4.94 11.52 -35.23 -0.41 -5.35 16 21 C 0.05 0.64 7.11 38.21 0.27 0.91 16 22 C -0.12 -1.97 8.19 -39.58 -0.32 -2.30 16 23 C -0.11 -2.11 8.71 -39.58 -0.34 -2.45 16 24 H 0.09 2.24 6.07 -51.93 -0.32 1.92 16 25 H 0.03 0.65 7.39 -51.93 -0.38 0.27 16 26 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 27 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 28 H 0.12 2.07 7.95 -52.48 -0.42 1.65 16 29 H 0.11 1.48 7.99 -52.48 -0.42 1.06 16 30 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.08 0.97 7.19 -51.93 -0.37 0.59 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.07 0.80 6.71 -51.93 -0.35 0.45 16 35 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.11 1.54 7.25 -52.49 -0.38 1.16 16 37 H 0.12 2.40 7.58 -52.49 -0.40 2.01 16 LS Contribution 299.67 15.07 4.52 4.52 Total: -1.00 -28.28 299.67 -8.42 -36.70 By element: Atomic # 1 Polarization: 6.13 SS G_CDS: -5.50 Total: 0.62 kcal Atomic # 6 Polarization: -25.50 SS G_CDS: -2.63 Total: -28.14 kcal Atomic # 7 Polarization: -24.97 SS G_CDS: 0.63 Total: -24.35 kcal Atomic # 8 Polarization: -4.94 SS G_CDS: -0.41 Total: -5.35 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -28.28 -8.42 -36.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260392508.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.780 kcal (2) G-P(sol) polarization free energy of solvation -28.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds