Wall clock time and date at job start Mon Mar 30 2020 05:48:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.47057 * 2 1 4 4 C 1.50695 * 109.47558 * 239.99952 * 2 1 3 5 5 H 1.07998 * 120.00326 * 240.00361 * 4 2 1 6 6 C 1.37884 * 119.99851 * 59.99925 * 4 2 1 7 7 N 1.31513 * 119.99937 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 120.00037 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.46983 * 359.97438 * 8 6 4 10 10 H 1.48493 * 109.47213 * 119.99923 * 8 6 4 11 11 H 1.48507 * 109.46976 * 239.99945 * 8 6 4 12 12 C 1.50704 * 109.46987 * 119.99573 * 2 1 3 13 13 C 1.38234 * 120.00347 * 240.00069 * 12 2 1 14 14 C 1.38231 * 120.00046 * 180.02562 * 13 12 2 15 15 C 1.38231 * 119.99865 * 359.97438 * 14 13 12 16 16 C 1.50703 * 119.99914 * 179.97438 * 15 14 13 17 17 H 1.09005 * 110.83049 * 3.64570 * 16 15 14 18 18 C 1.54807 * 110.90909 * 240.00277 * 16 15 14 19 19 C 1.54106 * 104.18688 * 220.91968 * 18 16 15 20 20 O 1.43739 * 107.29313 * 357.97161 * 19 18 16 21 21 C 1.44380 * 106.97820 * 26.50894 * 20 19 18 22 22 C 1.38235 * 120.00455 * 0.25637 * 15 14 13 23 23 C 1.38235 * 119.99554 * 60.03041 * 12 2 1 24 24 H 1.09006 * 109.47394 * 59.99908 * 1 2 3 25 25 H 1.09002 * 109.47057 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47492 * 299.99737 * 1 2 3 27 27 H 0.97000 * 120.00309 * 179.97438 * 7 6 4 28 28 H 1.08003 * 119.99900 * 0.02562 * 13 12 2 29 29 H 1.08004 * 120.00085 * 179.97438 * 14 13 12 30 30 H 1.08997 * 110.48888 * 102.24425 * 18 16 15 31 31 H 1.09000 * 110.48626 * 339.59653 * 18 16 15 32 32 H 1.09004 * 109.87710 * 117.39475 * 19 18 16 33 33 H 1.08997 * 109.87906 * 238.39454 * 19 18 16 34 34 H 1.08998 * 110.61673 * 78.44262 * 21 20 19 35 35 H 1.08994 * 110.62020 * 201.27896 * 21 20 19 36 36 H 1.08002 * 120.00294 * 179.72874 * 22 15 14 37 37 H 1.07995 * 120.00209 * 359.97438 * 23 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3215 -1.1202 -4.0079 9 1 3.1466 -2.2868 -3.6037 10 1 1.1663 -1.5866 -4.8160 11 1 3.1468 -0.1871 -4.8164 12 6 2.0323 -0.7103 1.2306 13 6 2.8270 -0.0385 2.1405 14 6 3.2881 -0.6903 3.2689 15 6 2.9541 -2.0137 3.4877 16 6 3.4573 -2.7245 4.7176 17 1 4.0136 -2.0414 5.3597 18 6 4.3227 -3.9490 4.3328 19 6 3.8972 -5.0415 5.3330 20 8 2.9272 -4.4564 6.2178 21 6 2.2882 -3.3837 5.4927 22 6 2.1634 -2.6870 2.5754 23 6 1.6988 -2.0340 1.4490 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 0.7087 1.1613 -3.4844 28 1 3.0876 0.9956 1.9698 29 1 3.9094 -0.1656 3.9797 30 1 5.3819 -3.7187 4.4472 31 1 4.1076 -4.2623 3.3112 32 1 3.4524 -5.8807 4.7982 33 1 4.7630 -5.3813 5.9012 34 1 1.5434 -3.7780 4.8015 35 1 1.8322 -2.6729 6.1818 36 1 1.9060 -3.7222 2.7441 37 1 1.0780 -2.5588 0.7381 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260392508.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:48:12 Heat of formation + Delta-G solvation = -54.817737 kcal Electronic energy + Delta-G solvation = -17430.103266 eV Core-core repulsion = 14749.753571 eV Total energy + Delta-G solvation = -2680.349695 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.99289 -39.55924 -36.45645 -34.24898 -32.50374 -31.66194 -30.54880 -28.59615 -27.21710 -24.53358 -23.75995 -23.20971 -21.85650 -20.81422 -18.31691 -17.81111 -17.29689 -16.78503 -16.19366 -15.85124 -15.67266 -15.33595 -14.63101 -14.47731 -14.24196 -13.99474 -13.88208 -13.38988 -13.18645 -12.87971 -12.83177 -12.54631 -12.36844 -12.25023 -12.13782 -11.97832 -11.78802 -11.46701 -11.17568 -10.97124 -10.62953 -10.48420 -9.67275 -9.16772 -8.10718 -6.24777 0.60382 0.64853 1.39071 1.41358 1.52490 2.41751 2.93080 3.06464 3.17310 3.73514 3.78051 4.03609 4.13753 4.19844 4.25294 4.34390 4.40893 4.42594 4.69953 4.77984 4.85488 4.85826 4.89118 4.92972 5.00909 5.09204 5.17962 5.18772 5.31434 5.35314 5.53439 5.67299 5.71155 5.77093 5.91553 6.04630 6.12858 6.27933 6.38438 6.84146 7.43147 8.93845 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.036129 B = 0.004966 C = 0.004691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.808610 B = 5636.751027 C = 5967.548008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.068 3.932 3 H 0.003 0.997 4 C -0.519 4.519 5 H 0.050 0.950 6 C 0.014 3.986 7 N -0.917 5.917 8 Si 0.954 3.046 9 H -0.269 1.269 10 H -0.278 1.278 11 H -0.280 1.280 12 C -0.060 4.060 13 C -0.143 4.143 14 C -0.111 4.111 15 C -0.095 4.095 16 C -0.070 4.070 17 H 0.102 0.898 18 C -0.148 4.148 19 C 0.044 3.956 20 O -0.399 6.399 21 C 0.052 3.948 22 C -0.114 4.114 23 C -0.123 4.123 24 H 0.058 0.942 25 H 0.031 0.969 26 H 0.023 0.977 27 H 0.262 0.738 28 H 0.114 0.886 29 H 0.142 0.858 30 H 0.090 0.910 31 H 0.074 0.926 32 H 0.063 0.937 33 H 0.099 0.901 34 H 0.063 0.937 35 H 0.102 0.898 36 H 0.133 0.867 37 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.159 -8.359 14.325 17.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.050 3.950 3 H 0.021 0.979 4 C -0.557 4.557 5 H 0.068 0.932 6 C -0.185 4.185 7 N -0.557 5.557 8 Si 0.780 3.220 9 H -0.194 1.194 10 H -0.204 1.204 11 H -0.206 1.206 12 C -0.060 4.060 13 C -0.161 4.161 14 C -0.129 4.129 15 C -0.095 4.095 16 C -0.089 4.089 17 H 0.120 0.880 18 C -0.186 4.186 19 C -0.032 4.032 20 O -0.318 6.318 21 C -0.024 4.024 22 C -0.132 4.132 23 C -0.141 4.141 24 H 0.077 0.923 25 H 0.050 0.950 26 H 0.042 0.958 27 H 0.071 0.929 28 H 0.132 0.868 29 H 0.160 0.840 30 H 0.109 0.891 31 H 0.092 0.908 32 H 0.081 0.919 33 H 0.117 0.883 34 H 0.081 0.919 35 H 0.120 0.880 36 H 0.150 0.850 37 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 5.039 -8.326 14.408 17.387 hybrid contribution 0.079 0.098 -1.609 1.614 sum 5.118 -8.228 12.799 16.054 Atomic orbital electron populations 1.21615 0.97459 0.99157 0.99595 1.17773 0.93141 0.93956 0.90158 0.97897 1.21399 1.30951 1.12188 0.91151 0.93199 1.25721 0.95278 0.95712 1.01788 1.70017 1.37631 1.24104 1.23955 0.85561 0.78220 0.78696 0.79536 1.19361 1.20407 1.20619 1.20447 0.95380 0.94860 0.95353 1.21199 0.99422 1.00146 0.95301 1.21171 1.00080 0.94468 0.97142 1.19588 0.99394 0.94058 0.96449 1.21595 0.96630 0.97005 0.93662 0.88019 1.23072 1.01291 0.94057 1.00157 1.23302 0.92476 0.95621 0.91824 1.88828 1.54402 1.49772 1.38805 1.23745 0.94590 0.88624 0.95424 1.21047 0.98333 0.99973 0.93848 1.20995 1.00972 0.94403 0.97722 0.92271 0.94990 0.95772 0.92915 0.86811 0.84028 0.89121 0.90768 0.91858 0.88322 0.91885 0.87994 0.84970 0.87395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.95 8.78 71.98 0.63 -5.31 16 2 C 0.07 3.49 2.48 -12.29 -0.03 3.46 16 3 H 0.00 0.16 7.88 -2.39 -0.02 0.14 16 4 C -0.52 -28.70 8.24 25.60 0.21 -28.48 16 5 H 0.05 2.76 7.60 -2.91 -0.02 2.74 16 6 C 0.01 0.75 5.30 84.66 0.45 1.20 16 7 N -0.92 -52.92 11.32 21.45 0.24 -52.68 16 8 Si 0.95 43.64 29.54 68.60 2.03 45.67 16 9 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 10 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 11 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 12 C -0.06 -2.61 4.74 -19.86 -0.09 -2.70 16 13 C -0.14 -5.34 9.67 22.27 0.22 -5.12 16 14 C -0.11 -3.30 9.69 22.27 0.22 -3.08 16 15 C -0.09 -2.61 4.95 -19.87 -0.10 -2.71 16 16 C -0.07 -1.48 3.34 -10.24 -0.03 -1.51 16 17 H 0.10 1.90 7.96 -2.38 -0.02 1.88 16 18 C -0.15 -2.77 6.50 31.59 0.21 -2.56 16 19 C 0.04 0.78 7.70 72.36 0.56 1.34 16 20 O -0.40 -9.02 11.52 -148.98 -1.72 -10.74 16 21 C 0.05 1.10 7.11 72.66 0.52 1.61 16 22 C -0.11 -3.52 8.19 22.27 0.18 -3.34 16 23 C -0.12 -4.77 8.71 22.27 0.19 -4.58 16 24 H 0.06 3.21 6.07 -2.38 -0.01 3.20 16 25 H 0.03 1.49 7.39 -2.39 -0.02 1.47 16 26 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 27 H 0.26 14.29 8.31 -92.71 -0.77 13.52 16 28 H 0.11 4.16 7.95 -2.91 -0.02 4.14 16 29 H 0.14 3.29 7.99 -2.91 -0.02 3.27 16 30 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.07 1.52 7.19 -2.39 -0.02 1.50 16 32 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.06 1.35 6.71 -2.39 -0.02 1.33 16 35 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 36 H 0.13 3.41 7.25 -2.91 -0.02 3.39 16 37 H 0.11 4.38 7.58 -2.91 -0.02 4.35 16 Total: -1.00 -61.44 299.67 4.71 -56.73 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: 1.04 Total: 12.81 kcal Atomic # 6 Polarization: -54.91 SS G_CDS: 3.12 Total: -51.79 kcal Atomic # 7 Polarization: -52.92 SS G_CDS: 0.24 Total: -52.68 kcal Atomic # 8 Polarization: -9.02 SS G_CDS: -1.72 Total: -10.74 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Total: -61.44 4.71 -56.73 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260392508.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.912 kcal (2) G-P(sol) polarization free energy of solvation -61.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds