Wall clock time and date at job start Mon Mar 30 2020 05:48:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47493 * 2 1 4 4 C 1.50706 * 109.46631 * 120.00114 * 2 1 3 5 5 H 1.08000 * 119.99988 * 120.00202 * 4 2 1 6 6 C 1.37878 * 119.99783 * 299.99509 * 4 2 1 7 7 N 1.31512 * 120.00030 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99715 * 180.02562 * 6 4 2 9 9 H 1.48508 * 109.47050 * 90.00453 * 8 6 4 10 10 H 1.48500 * 109.47205 * 209.99904 * 8 6 4 11 11 H 1.48493 * 109.47334 * 330.00323 * 8 6 4 12 12 C 1.50695 * 109.47066 * 239.99459 * 2 1 3 13 13 C 1.38240 * 119.99869 * 120.00450 * 12 2 1 14 14 C 1.38237 * 120.00232 * 180.02562 * 13 12 2 15 15 C 1.38232 * 119.99829 * 359.95004 * 14 13 12 16 16 C 1.50706 * 119.99870 * 180.02562 * 15 14 13 17 17 H 1.08993 * 110.74995 * 356.53426 * 16 15 14 18 18 C 1.55304 * 110.84438 * 120.00415 * 16 15 14 19 19 C 1.54944 * 100.97800 * 152.30294 * 18 16 15 20 20 O 1.43693 * 105.11450 * 323.61333 * 19 18 16 21 21 C 1.43240 * 109.99409 * 24.36003 * 20 19 18 22 22 C 1.38235 * 119.99991 * 0.28110 * 15 14 13 23 23 C 1.38234 * 120.00253 * 359.53267 * 22 15 14 24 24 H 1.08997 * 109.47207 * 300.00134 * 1 2 3 25 25 H 1.08998 * 109.47068 * 60.00134 * 1 2 3 26 26 H 1.09000 * 109.47493 * 180.02562 * 1 2 3 27 27 H 0.96999 * 119.99584 * 179.97438 * 7 6 4 28 28 H 1.08003 * 120.00024 * 359.97438 * 13 12 2 29 29 H 1.07997 * 120.00187 * 179.97438 * 14 13 12 30 30 H 1.09002 * 111.12488 * 270.24270 * 18 16 15 31 31 H 1.08995 * 111.12730 * 34.36265 * 18 16 15 32 32 H 1.08996 * 110.31114 * 82.48962 * 19 18 16 33 33 H 1.09004 * 110.31323 * 204.65778 * 19 18 16 34 34 H 1.09001 * 109.83319 * 238.81565 * 21 20 19 35 35 H 1.08996 * 109.83048 * 117.84247 * 21 20 19 36 36 H 1.08003 * 119.99835 * 179.72060 * 22 15 14 37 37 H 1.08002 * 120.00286 * 180.20882 * 23 22 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7105 1.2305 5 1 2.6531 -1.5886 1.1315 6 6 1.6991 -0.2393 2.4828 7 7 0.9427 0.8297 2.6034 8 14 2.3222 -1.1196 4.0080 9 1 3.6303 -0.5441 4.4120 10 1 1.3442 -0.9489 5.1123 11 1 2.4877 -2.5653 3.7123 12 6 2.0323 -0.7105 -1.2304 13 6 2.8271 -0.0388 -2.1403 14 6 3.2875 -0.6903 -3.2693 15 6 2.9539 -2.0139 -3.4877 16 6 3.4563 -2.7243 -4.7182 17 1 4.0140 -2.0407 -5.3582 18 6 4.3250 -3.9522 -4.3314 19 6 4.1065 -4.8678 -5.5621 20 8 2.7369 -4.6608 -5.9445 21 6 2.2899 -3.3782 -5.4897 22 6 2.1552 -2.6842 -2.5802 23 6 1.6980 -2.0338 -1.4494 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 0.7081 1.1609 3.4843 28 1 3.0878 0.9954 -1.9697 29 1 3.9081 -0.1654 -3.9804 30 1 5.3742 -3.6747 -4.2295 31 1 3.9557 -4.4235 -3.4206 32 1 4.7735 -4.5766 -6.3735 33 1 4.2712 -5.9108 -5.2918 34 1 1.4311 -3.4987 -4.8293 35 1 2.0172 -2.7577 -6.3433 36 1 1.8908 -3.7170 -2.7532 37 1 1.0767 -2.5586 -0.7386 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260392512.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:48:14 Heat of formation + Delta-G solvation = -40.351972 kcal Electronic energy + Delta-G solvation = -17428.331444 eV Core-core repulsion = 14748.609032 eV Total energy + Delta-G solvation = -2679.722412 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.89766 -38.30698 -34.76224 -32.76990 -30.93601 -30.30555 -29.49557 -27.26510 -25.14046 -23.09927 -22.35886 -22.25922 -20.50992 -19.38323 -16.83372 -16.44635 -16.14196 -15.22990 -14.87048 -14.54918 -14.18010 -14.03172 -13.30402 -13.08424 -12.85637 -12.66605 -12.46219 -11.85397 -11.64426 -11.55381 -11.22952 -11.08999 -10.94518 -10.81230 -10.66975 -10.44654 -10.26200 -10.03201 -9.58300 -9.40594 -9.01786 -8.39539 -8.28063 -7.70206 -6.03213 -4.10047 1.99601 2.04574 3.28259 3.35117 3.38619 3.82320 4.28533 4.43224 4.65183 4.72954 4.96001 5.12141 5.17454 5.27635 5.31939 5.51007 5.53054 5.61483 5.72908 5.78798 5.88173 5.97363 6.02777 6.25334 6.30120 6.59760 6.66073 6.83970 6.90415 6.97577 7.10327 7.18588 7.21386 7.35485 7.67254 7.73351 7.95695 8.07560 8.37376 8.92561 9.54678 11.02435 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.035949 B = 0.004964 C = 0.004703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.684415 B = 5639.384607 C = 5952.592776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.069 3.931 3 H 0.034 0.966 4 C -0.507 4.507 5 H 0.057 0.943 6 C 0.062 3.938 7 N -0.890 5.890 8 Si 0.892 3.108 9 H -0.281 1.281 10 H -0.286 1.286 11 H -0.274 1.274 12 C -0.028 4.028 13 C -0.131 4.131 14 C -0.117 4.117 15 C -0.111 4.111 16 C -0.073 4.073 17 H 0.086 0.914 18 C -0.149 4.149 19 C 0.050 3.950 20 O -0.389 6.389 21 C 0.056 3.944 22 C -0.119 4.119 23 C -0.108 4.108 24 H 0.085 0.915 25 H 0.008 0.992 26 H 0.028 0.972 27 H 0.261 0.739 28 H 0.115 0.885 29 H 0.109 0.891 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.058 0.942 33 H 0.083 0.917 34 H 0.077 0.923 35 H 0.067 0.933 36 H 0.111 0.889 37 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.602 -6.449 -13.248 15.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.050 3.950 3 H 0.052 0.948 4 C -0.545 4.545 5 H 0.075 0.925 6 C -0.139 4.139 7 N -0.529 5.529 8 Si 0.720 3.280 9 H -0.207 1.207 10 H -0.212 1.212 11 H -0.199 1.199 12 C -0.028 4.028 13 C -0.149 4.149 14 C -0.135 4.135 15 C -0.111 4.111 16 C -0.091 4.091 17 H 0.104 0.896 18 C -0.187 4.187 19 C -0.026 4.026 20 O -0.308 6.308 21 C -0.021 4.021 22 C -0.137 4.137 23 C -0.126 4.126 24 H 0.104 0.896 25 H 0.027 0.973 26 H 0.047 0.953 27 H 0.071 0.929 28 H 0.133 0.867 29 H 0.127 0.873 30 H 0.101 0.899 31 H 0.102 0.898 32 H 0.076 0.924 33 H 0.101 0.899 34 H 0.095 0.905 35 H 0.085 0.915 36 H 0.129 0.871 37 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 4.388 -6.478 -13.223 15.364 hybrid contribution 0.538 -0.195 1.055 1.201 sum 4.926 -6.673 -12.168 14.726 Atomic orbital electron populations 1.21780 0.97593 0.99290 1.00260 1.17919 0.92908 0.95448 0.88702 0.94788 1.21106 1.31172 1.12365 0.89854 0.92500 1.24959 0.95026 0.95008 0.98945 1.69884 1.36620 1.22929 1.23431 0.86584 0.78604 0.80112 0.82670 1.20681 1.21195 1.19894 1.20715 0.92712 0.93835 0.95534 1.21116 0.99340 0.99925 0.94489 1.20852 1.00724 0.93998 0.97910 1.19240 1.01290 0.94393 0.96173 1.21557 0.95853 0.96653 0.95077 0.89587 1.23389 1.00998 0.95282 0.98987 1.23385 0.83553 1.00053 0.95610 1.88383 1.27299 1.35864 1.79267 1.23323 0.97041 0.83824 0.97865 1.20879 0.98800 0.99131 0.94932 1.21063 1.00199 0.94932 0.96432 0.89630 0.97275 0.95277 0.92935 0.86674 0.87267 0.89910 0.89824 0.92397 0.89884 0.90531 0.91527 0.87145 0.86030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.15 8.78 37.16 0.33 -2.82 16 2 C 0.07 1.70 2.48 -92.92 -0.23 1.47 16 3 H 0.03 0.90 7.88 -51.93 -0.41 0.49 16 4 C -0.51 -13.67 8.24 -34.44 -0.28 -13.95 16 5 H 0.06 1.54 7.60 -52.49 -0.40 1.14 16 6 C 0.06 1.68 5.30 -17.82 -0.09 1.59 16 7 N -0.89 -25.03 11.32 55.43 0.63 -24.40 16 8 Si 0.89 21.07 29.54 -169.99 -5.02 16.05 16 9 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 10 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.27 -6.41 7.11 56.52 0.40 -6.00 16 12 C -0.03 -0.60 4.74 -104.62 -0.50 -1.09 16 13 C -0.13 -2.47 9.67 -39.58 -0.38 -2.85 16 14 C -0.12 -1.88 9.69 -39.58 -0.38 -2.26 16 15 C -0.11 -1.69 4.96 -104.62 -0.52 -2.21 16 16 C -0.07 -0.89 3.22 -89.82 -0.29 -1.18 16 17 H 0.09 0.95 7.96 -51.93 -0.41 0.53 16 18 C -0.15 -1.64 6.56 -24.48 -0.16 -1.80 16 19 C 0.05 0.52 7.78 38.18 0.30 0.82 16 20 O -0.39 -5.10 11.36 -35.23 -0.40 -5.50 16 21 C 0.06 0.69 7.26 37.88 0.28 0.96 16 22 C -0.12 -1.98 8.10 -39.58 -0.32 -2.30 16 23 C -0.11 -2.13 8.71 -39.58 -0.34 -2.47 16 24 H 0.09 2.24 6.07 -51.93 -0.32 1.93 16 25 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 26 H 0.03 0.66 7.39 -51.93 -0.38 0.28 16 27 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 28 H 0.12 2.07 7.95 -52.48 -0.42 1.66 16 29 H 0.11 1.46 7.98 -52.49 -0.42 1.04 16 30 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.08 1.00 7.24 -51.93 -0.38 0.62 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.08 0.99 6.62 -51.93 -0.34 0.65 16 35 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.11 1.63 7.30 -52.48 -0.38 1.25 16 37 H 0.12 2.44 7.58 -52.49 -0.40 2.04 16 LS Contribution 299.61 15.07 4.51 4.51 Total: -1.00 -28.37 299.61 -8.39 -36.76 By element: Atomic # 1 Polarization: 6.18 SS G_CDS: -5.50 Total: 0.68 kcal Atomic # 6 Polarization: -25.50 SS G_CDS: -2.61 Total: -28.11 kcal Atomic # 7 Polarization: -25.03 SS G_CDS: 0.63 Total: -24.40 kcal Atomic # 8 Polarization: -5.10 SS G_CDS: -0.40 Total: -5.50 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -28.37 -8.39 -36.76 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260392512.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.592 kcal (2) G-P(sol) polarization free energy of solvation -28.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds