Wall clock time and date at job start Mon Mar 30 2020 05:52:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35898 * 117.00254 * 2 1 4 4 C 1.38753 * 120.05357 * 359.97438 * 3 2 1 5 5 C 1.38123 * 119.94329 * 180.02562 * 4 3 2 6 6 C 1.38288 * 120.05386 * 0.02562 * 5 4 3 7 7 C 1.38244 * 120.11305 * 359.97438 * 6 5 4 8 8 C 1.50699 * 119.96896 * 180.28413 * 7 6 5 9 9 C 1.53008 * 109.46979 * 269.72343 * 8 7 6 10 10 H 1.08997 * 115.54807 * 330.58728 * 9 8 7 11 11 C 1.52998 * 117.49656 * 116.25511 * 9 8 7 12 12 C 1.52999 * 117.49901 * 184.91644 * 9 8 7 13 13 H 1.08998 * 117.49681 * 145.02377 * 12 9 8 14 14 C 1.52999 * 117.49651 * 359.97438 * 12 9 8 15 15 C 1.50705 * 109.47019 * 175.00282 * 14 12 9 16 16 H 1.07998 * 119.99611 * 359.97438 * 15 14 12 17 17 C 1.37876 * 120.00129 * 180.02562 * 15 14 12 18 18 N 1.31517 * 120.00061 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00002 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46838 * 89.99697 * 19 17 15 21 21 H 1.48503 * 109.47105 * 209.99640 * 19 17 15 22 22 H 1.48498 * 109.47146 * 329.99690 * 19 17 15 23 23 C 1.38165 * 120.05319 * 0.02562 * 7 6 5 24 24 H 1.09001 * 109.47459 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47097 * 299.99927 * 1 2 3 26 26 H 1.09005 * 109.47182 * 59.99870 * 1 2 3 27 27 H 1.08001 * 120.02917 * 359.97438 * 4 3 2 28 28 H 1.08001 * 119.96995 * 180.02562 * 5 4 3 29 29 H 1.08004 * 119.93990 * 180.02562 * 6 5 4 30 30 H 1.08993 * 109.47472 * 29.72221 * 8 7 6 31 31 H 1.08997 * 109.46933 * 149.72643 * 8 7 6 32 32 H 1.09000 * 117.49922 * 214.98227 * 11 9 8 33 33 H 1.08997 * 117.50146 * 359.97438 * 11 9 8 34 34 H 1.09003 * 109.47529 * 294.99842 * 14 12 9 35 35 H 1.08999 * 109.47150 * 55.00590 * 14 12 9 36 36 H 0.97001 * 119.99936 * 180.02562 * 18 17 15 37 37 H 1.08000 * 120.02386 * 180.02562 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2915 2.3753 -0.0005 5 6 1.9210 3.6047 -0.0011 6 6 3.3020 3.6757 -0.0016 7 6 4.0560 2.5170 -0.0011 8 6 5.5608 2.5981 0.0048 9 6 6.0759 2.6215 -1.4358 10 1 5.4549 2.1021 -2.1656 11 6 6.8127 3.8786 -1.9022 12 6 7.5912 2.5860 -1.6449 13 1 7.9669 2.0437 -2.5125 14 6 8.4753 2.5304 -0.3974 15 6 9.9168 2.3783 -0.8098 16 1 10.1762 2.3260 -1.8569 17 6 10.9043 2.3048 0.1496 18 7 10.5883 2.3680 1.4247 19 14 12.6910 2.1155 -0.3615 20 1 13.3019 3.4582 -0.5320 21 1 13.4288 1.3652 0.6864 22 1 12.7625 1.3725 -1.6453 23 6 3.4311 1.2847 -0.0005 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 0.2129 2.3203 -0.0014 28 1 1.3341 4.5113 -0.0011 29 1 3.7923 4.6380 -0.0016 30 1 5.8737 3.5077 0.5173 31 1 5.9694 1.7303 0.5227 32 1 6.6766 4.1862 -2.9390 33 1 6.9300 4.6892 -1.1830 34 1 8.3561 3.4511 0.1738 35 1 8.1819 1.6802 0.2183 36 1 11.2830 2.3166 2.0997 37 1 4.0206 0.3798 0.0003 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260400410.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:05 Heat of formation + Delta-G solvation = -8.275136 kcal Electronic energy + Delta-G solvation = -16810.327606 eV Core-core repulsion = 14131.996149 eV Total energy + Delta-G solvation = -2678.331456 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.12729 -38.07918 -36.80778 -32.84840 -31.92610 -30.40573 -28.23736 -27.50016 -26.43950 -23.22971 -22.51177 -21.43889 -20.50580 -18.60341 -17.66596 -16.37260 -16.23628 -15.89535 -15.81388 -14.75155 -14.40548 -14.19753 -13.62579 -13.39925 -13.06592 -12.52481 -12.33332 -12.07341 -11.87818 -11.70505 -11.33556 -11.23453 -10.99134 -10.83463 -10.77961 -10.66224 -10.46743 -9.68731 -9.25187 -9.08966 -8.76661 -8.59921 -8.24849 -8.12871 -5.96770 -3.98088 1.40619 1.52596 3.20801 3.34546 3.40676 3.44246 3.83906 4.47192 4.59458 4.75890 4.86846 4.95983 4.98413 5.14168 5.27129 5.37916 5.43239 5.50698 5.54686 5.62920 5.75060 5.86736 5.90513 6.17972 6.29508 6.32579 6.36484 6.43559 6.49889 6.75952 6.81083 6.89899 6.91345 7.16074 7.40070 7.72071 7.82275 8.02536 8.47423 9.07568 9.65203 11.14436 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.039621 B = 0.003893 C = 0.003757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.523115 B = 7190.757616 C = 7450.694214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.319 6.319 3 C 0.123 3.877 4 C -0.221 4.221 5 C -0.082 4.082 6 C -0.152 4.152 7 C -0.024 4.024 8 C -0.049 4.049 9 C -0.162 4.162 10 H 0.091 0.909 11 C -0.184 4.184 12 C -0.115 4.115 13 H 0.091 0.909 14 C 0.049 3.951 15 C -0.515 4.515 16 H 0.055 0.945 17 C 0.055 3.945 18 N -0.896 5.896 19 Si 0.891 3.109 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.274 1.274 23 C -0.150 4.150 24 H 0.097 0.903 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.122 0.878 28 H 0.121 0.879 29 H 0.124 0.876 30 H 0.077 0.923 31 H 0.082 0.918 32 H 0.078 0.922 33 H 0.088 0.912 34 H 0.019 0.981 35 H 0.023 0.977 36 H 0.260 0.740 37 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.868 -0.135 -2.554 20.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.233 6.233 3 C 0.079 3.921 4 C -0.240 4.240 5 C -0.100 4.100 6 C -0.170 4.170 7 C -0.024 4.024 8 C -0.086 4.086 9 C -0.180 4.180 10 H 0.109 0.891 11 C -0.221 4.221 12 C -0.133 4.133 13 H 0.109 0.891 14 C 0.012 3.988 15 C -0.554 4.554 16 H 0.073 0.927 17 C -0.145 4.145 18 N -0.536 5.536 19 Si 0.719 3.281 20 H -0.207 1.207 21 H -0.213 1.213 22 H -0.199 1.199 23 C -0.168 4.168 24 H 0.115 0.885 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.140 0.860 28 H 0.139 0.861 29 H 0.142 0.858 30 H 0.096 0.904 31 H 0.100 0.900 32 H 0.097 0.903 33 H 0.107 0.893 34 H 0.037 0.963 35 H 0.041 0.959 36 H 0.070 0.930 37 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -19.710 -0.339 -2.376 19.856 hybrid contribution 0.652 0.105 -0.273 0.714 sum -19.059 -0.233 -2.649 19.243 Atomic orbital electron populations 1.23005 0.78817 1.03640 1.01152 1.86075 1.21035 1.27231 1.88934 1.19011 0.92320 0.83945 0.96851 1.21120 0.99561 0.92533 1.10755 1.20883 0.94636 0.96729 0.97799 1.21021 0.93479 0.98401 1.04096 1.19882 0.96421 0.91823 0.94295 1.20186 0.88582 1.03804 0.96069 1.22225 0.96661 1.03186 0.95933 0.89105 1.23072 1.06245 0.92127 1.00626 1.22830 0.90303 0.97881 1.02263 0.89124 1.18741 0.92725 0.97235 0.90115 1.21258 0.91763 1.49553 0.92789 0.92686 1.25014 0.99038 0.95506 0.94969 1.69960 1.33040 1.50933 0.99647 0.86603 0.85120 0.78096 0.78240 1.20734 1.21269 1.19903 1.20390 0.91069 0.98659 1.06697 0.88470 0.92831 0.92857 0.86003 0.86121 0.85847 0.90439 0.89992 0.90348 0.89332 0.96264 0.95908 0.93044 0.85115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 9.81 101.05 0.99 1.22 16 2 O -0.32 -4.04 10.50 -19.42 -0.20 -4.24 16 3 C 0.12 1.68 6.69 -39.22 -0.26 1.42 16 4 C -0.22 -2.61 9.04 -39.43 -0.36 -2.97 16 5 C -0.08 -0.97 10.04 -39.61 -0.40 -1.37 16 6 C -0.15 -2.04 9.70 -39.56 -0.38 -2.43 16 7 C -0.02 -0.36 5.09 -104.65 -0.53 -0.89 16 8 C -0.05 -0.83 4.70 -27.88 -0.13 -0.96 16 9 C -0.16 -2.85 5.72 -90.62 -0.52 -3.37 16 10 H 0.09 1.52 8.07 -51.93 -0.42 1.10 16 11 C -0.18 -3.31 9.83 -26.69 -0.26 -3.58 16 12 C -0.11 -2.41 5.70 -90.58 -0.52 -2.93 16 13 H 0.09 1.91 8.00 -51.93 -0.42 1.50 16 14 C 0.05 1.25 4.34 -27.88 -0.12 1.13 16 15 C -0.52 -14.66 9.08 -34.44 -0.31 -14.97 16 16 H 0.05 1.53 7.68 -52.49 -0.40 1.13 16 17 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 18 N -0.90 -26.93 13.29 55.43 0.74 -26.19 16 19 Si 0.89 21.80 29.54 -169.99 -5.02 16.78 16 20 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 21 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 22 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 23 C -0.15 -2.22 9.64 -39.44 -0.38 -2.60 16 24 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.05 0.37 7.66 -51.93 -0.40 -0.02 16 26 H 0.05 0.37 7.66 -51.93 -0.40 -0.03 16 27 H 0.12 1.12 6.30 -52.49 -0.33 0.79 16 28 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 29 H 0.12 1.53 8.06 -52.48 -0.42 1.11 16 30 H 0.08 1.33 7.82 -51.93 -0.41 0.92 16 31 H 0.08 1.47 7.55 -51.93 -0.39 1.07 16 32 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 33 H 0.09 1.61 7.92 -51.93 -0.41 1.19 16 34 H 0.02 0.52 7.88 -51.93 -0.41 0.11 16 35 H 0.02 0.62 7.60 -51.93 -0.39 0.23 16 36 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 37 H 0.13 1.92 8.06 -52.49 -0.42 1.49 16 LS Contribution 312.37 15.07 4.71 4.71 Total: -1.00 -30.85 312.37 -8.69 -39.53 By element: Atomic # 1 Polarization: 5.84 SS G_CDS: -5.63 Total: 0.21 kcal Atomic # 6 Polarization: -27.51 SS G_CDS: -3.28 Total: -30.79 kcal Atomic # 7 Polarization: -26.93 SS G_CDS: 0.74 Total: -26.19 kcal Atomic # 8 Polarization: -4.04 SS G_CDS: -0.20 Total: -4.24 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -30.85 -8.69 -39.53 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260400410.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.257 kcal (2) G-P(sol) polarization free energy of solvation -30.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds