Wall clock time and date at job start Mon Mar 30 2020 05:52:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35898 * 117.00254 * 2 1 4 4 C 1.38753 * 120.05357 * 359.97438 * 3 2 1 5 5 C 1.38123 * 119.94329 * 180.02562 * 4 3 2 6 6 C 1.38288 * 120.05386 * 0.02562 * 5 4 3 7 7 C 1.38244 * 120.11305 * 359.97438 * 6 5 4 8 8 C 1.50699 * 119.96896 * 180.28413 * 7 6 5 9 9 C 1.53008 * 109.46979 * 269.72343 * 8 7 6 10 10 H 1.08997 * 115.54807 * 330.58728 * 9 8 7 11 11 C 1.52998 * 117.49656 * 116.25511 * 9 8 7 12 12 C 1.52999 * 117.49901 * 184.91644 * 9 8 7 13 13 H 1.08998 * 117.49681 * 145.02377 * 12 9 8 14 14 C 1.52999 * 117.49651 * 359.97438 * 12 9 8 15 15 C 1.50705 * 109.47019 * 175.00282 * 14 12 9 16 16 H 1.07998 * 119.99611 * 359.97438 * 15 14 12 17 17 C 1.37876 * 120.00129 * 180.02562 * 15 14 12 18 18 N 1.31517 * 120.00061 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00002 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46838 * 89.99697 * 19 17 15 21 21 H 1.48503 * 109.47105 * 209.99640 * 19 17 15 22 22 H 1.48498 * 109.47146 * 329.99690 * 19 17 15 23 23 C 1.38165 * 120.05319 * 0.02562 * 7 6 5 24 24 H 1.09001 * 109.47459 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47097 * 299.99927 * 1 2 3 26 26 H 1.09005 * 109.47182 * 59.99870 * 1 2 3 27 27 H 1.08001 * 120.02917 * 359.97438 * 4 3 2 28 28 H 1.08001 * 119.96995 * 180.02562 * 5 4 3 29 29 H 1.08004 * 119.93990 * 180.02562 * 6 5 4 30 30 H 1.08993 * 109.47472 * 29.72221 * 8 7 6 31 31 H 1.08997 * 109.46933 * 149.72643 * 8 7 6 32 32 H 1.09000 * 117.49922 * 214.98227 * 11 9 8 33 33 H 1.08997 * 117.50146 * 359.97438 * 11 9 8 34 34 H 1.09003 * 109.47529 * 294.99842 * 14 12 9 35 35 H 1.08999 * 109.47150 * 55.00590 * 14 12 9 36 36 H 0.97001 * 119.99936 * 180.02562 * 18 17 15 37 37 H 1.08000 * 120.02386 * 180.02562 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2915 2.3753 -0.0005 5 6 1.9210 3.6047 -0.0011 6 6 3.3020 3.6757 -0.0016 7 6 4.0560 2.5170 -0.0011 8 6 5.5608 2.5981 0.0048 9 6 6.0759 2.6215 -1.4358 10 1 5.4549 2.1021 -2.1656 11 6 6.8127 3.8786 -1.9022 12 6 7.5912 2.5860 -1.6449 13 1 7.9669 2.0437 -2.5125 14 6 8.4753 2.5304 -0.3974 15 6 9.9168 2.3783 -0.8098 16 1 10.1762 2.3260 -1.8569 17 6 10.9043 2.3048 0.1496 18 7 10.5883 2.3680 1.4247 19 14 12.6910 2.1155 -0.3615 20 1 13.3019 3.4582 -0.5320 21 1 13.4288 1.3652 0.6864 22 1 12.7625 1.3725 -1.6453 23 6 3.4311 1.2847 -0.0005 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 0.2129 2.3203 -0.0014 28 1 1.3341 4.5113 -0.0011 29 1 3.7923 4.6380 -0.0016 30 1 5.8737 3.5077 0.5173 31 1 5.9694 1.7303 0.5227 32 1 6.6766 4.1862 -2.9390 33 1 6.9300 4.6892 -1.1830 34 1 8.3561 3.4511 0.1738 35 1 8.1819 1.6802 0.2183 36 1 11.2830 2.3166 2.0997 37 1 4.0206 0.3798 0.0003 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260400410.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:05 Heat of formation + Delta-G solvation = -24.209920 kcal Electronic energy + Delta-G solvation = -16811.018590 eV Core-core repulsion = 14131.996149 eV Total energy + Delta-G solvation = -2679.022441 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.09632 -39.35576 -38.05609 -34.94796 -33.15212 -31.38660 -30.23700 -28.37273 -27.55157 -25.33266 -23.52980 -22.58825 -21.90594 -20.17479 -18.83284 -18.38346 -17.17040 -16.88166 -16.62411 -16.56948 -16.11076 -15.24106 -14.92939 -14.56985 -14.34896 -14.15462 -13.65384 -13.55911 -13.33204 -12.90931 -12.80671 -12.68822 -12.48552 -12.39642 -12.32216 -11.85064 -11.76134 -11.48955 -11.32174 -10.83134 -10.47725 -10.31531 -9.71538 -9.12389 -8.17963 -6.28164 0.38097 0.51681 1.40349 1.41830 1.52932 2.38986 2.42080 2.81107 3.02560 3.16565 3.75532 3.90948 4.02383 4.15192 4.16742 4.32019 4.33133 4.41592 4.46968 4.53901 4.55017 4.65658 4.74349 4.85234 4.93946 5.01031 5.05477 5.12452 5.32863 5.34015 5.45877 5.52449 5.57545 5.69722 5.75284 5.85821 5.87031 6.29584 6.49752 6.87176 7.40186 8.93546 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.039621 B = 0.003893 C = 0.003757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.523115 B = 7190.757616 C = 7450.694214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.341 6.341 3 C 0.116 3.884 4 C -0.214 4.214 5 C -0.076 4.076 6 C -0.161 4.161 7 C -0.038 4.038 8 C -0.045 4.045 9 C -0.139 4.139 10 H 0.107 0.893 11 C -0.164 4.164 12 C -0.147 4.147 13 H 0.090 0.910 14 C 0.060 3.940 15 C -0.539 4.539 16 H 0.058 0.942 17 C -0.001 4.001 18 N -0.933 5.933 19 Si 0.964 3.036 20 H -0.272 1.272 21 H -0.282 1.282 22 H -0.264 1.264 23 C -0.173 4.173 24 H 0.116 0.884 25 H 0.066 0.934 26 H 0.066 0.934 27 H 0.154 0.846 28 H 0.155 0.845 29 H 0.132 0.868 30 H 0.068 0.932 31 H 0.058 0.942 32 H 0.106 0.894 33 H 0.085 0.915 34 H -0.005 1.005 35 H -0.007 1.007 36 H 0.263 0.737 37 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.558 0.617 -3.728 21.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.255 6.255 3 C 0.071 3.929 4 C -0.233 4.233 5 C -0.094 4.094 6 C -0.179 4.179 7 C -0.038 4.038 8 C -0.082 4.082 9 C -0.157 4.157 10 H 0.125 0.875 11 C -0.201 4.201 12 C -0.165 4.165 13 H 0.108 0.892 14 C 0.023 3.977 15 C -0.577 4.577 16 H 0.076 0.924 17 C -0.198 4.198 18 N -0.573 5.573 19 Si 0.789 3.211 20 H -0.197 1.197 21 H -0.207 1.207 22 H -0.189 1.189 23 C -0.191 4.191 24 H 0.134 0.866 25 H 0.084 0.916 26 H 0.085 0.915 27 H 0.171 0.829 28 H 0.172 0.828 29 H 0.150 0.850 30 H 0.087 0.913 31 H 0.077 0.923 32 H 0.124 0.876 33 H 0.104 0.896 34 H 0.013 0.987 35 H 0.011 0.989 36 H 0.072 0.928 37 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -21.417 0.411 -3.562 21.715 hybrid contribution 1.058 -0.165 0.129 1.079 sum -20.358 0.246 -3.432 20.647 Atomic orbital electron populations 1.23345 0.76356 1.05484 1.02375 1.86051 1.23630 1.27037 1.88795 1.19111 0.91986 0.85105 0.96677 1.21490 1.01104 0.91704 1.08967 1.21263 0.94008 0.98108 0.95983 1.21191 0.94522 0.97994 1.04236 1.19663 0.94957 0.92800 0.96367 1.20043 0.90553 1.02252 0.95334 1.22242 0.94104 1.02620 0.96711 0.87543 1.23128 1.03741 0.91081 1.02145 1.22535 0.92023 1.01592 1.00337 0.89226 1.18480 0.92971 0.94633 0.91572 1.21702 0.93295 1.49603 0.93081 0.92412 1.25962 1.04042 0.94953 0.94889 1.70096 1.34679 1.51705 1.00848 0.85461 0.79035 0.78462 0.78175 1.19741 1.20739 1.18862 1.20391 0.92236 0.98194 1.08324 0.86561 0.91563 0.91500 0.82871 0.82751 0.85023 0.91328 0.92313 0.87579 0.89641 0.98679 0.98875 0.92820 0.86434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.81 113.37 1.11 1.36 16 2 O -0.34 -8.23 10.50 -92.40 -0.97 -9.20 16 3 C 0.12 3.03 6.69 22.50 0.15 3.18 16 4 C -0.21 -4.43 9.04 22.37 0.20 -4.23 16 5 C -0.08 -1.56 10.04 22.25 0.22 -1.33 16 6 C -0.16 -4.11 9.70 22.28 0.22 -3.89 16 7 C -0.04 -1.14 5.09 -19.88 -0.10 -1.24 16 8 C -0.04 -1.57 4.70 29.85 0.14 -1.43 16 9 C -0.14 -4.91 5.72 -10.79 -0.06 -4.97 16 10 H 0.11 3.46 8.07 -2.39 -0.02 3.44 16 11 C -0.16 -5.79 9.83 30.62 0.30 -5.49 16 12 C -0.15 -6.32 5.70 -10.77 -0.06 -6.38 16 13 H 0.09 3.84 8.00 -2.39 -0.02 3.82 16 14 C 0.06 3.26 4.34 29.85 0.13 3.39 16 15 C -0.54 -31.49 9.08 25.60 0.23 -31.26 16 16 H 0.06 3.25 7.68 -2.91 -0.02 3.23 16 17 C 0.00 -0.06 5.46 84.65 0.46 0.41 16 18 N -0.93 -57.67 13.29 21.45 0.28 -57.39 16 19 Si 0.96 45.13 29.54 68.60 2.03 47.15 16 20 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 21 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 22 H -0.26 -11.86 7.11 99.48 0.71 -11.15 16 23 C -0.17 -5.22 9.64 22.36 0.22 -5.01 16 24 H 0.12 1.08 8.14 -2.39 -0.02 1.06 16 25 H 0.07 0.72 7.66 -2.39 -0.02 0.70 16 26 H 0.07 0.72 7.66 -2.38 -0.02 0.70 16 27 H 0.15 2.15 6.30 -2.91 -0.02 2.13 16 28 H 0.15 2.12 8.06 -2.91 -0.02 2.09 16 29 H 0.13 3.06 8.06 -2.91 -0.02 3.04 16 30 H 0.07 2.47 7.82 -2.39 -0.02 2.46 16 31 H 0.06 2.30 7.55 -2.39 -0.02 2.28 16 32 H 0.11 3.18 8.14 -2.39 -0.02 3.16 16 33 H 0.09 3.07 7.92 -2.39 -0.02 3.05 16 34 H -0.01 -0.30 7.88 -2.39 -0.02 -0.31 16 35 H -0.01 -0.41 7.60 -2.39 -0.02 -0.43 16 36 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 37 H 0.12 3.70 8.06 -2.91 -0.02 3.68 16 Total: -1.00 -68.16 312.37 5.54 -62.62 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: 1.03 Total: 13.70 kcal Atomic # 6 Polarization: -60.05 SS G_CDS: 3.16 Total: -56.89 kcal Atomic # 7 Polarization: -57.67 SS G_CDS: 0.28 Total: -57.39 kcal Atomic # 8 Polarization: -8.23 SS G_CDS: -0.97 Total: -9.20 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.15 kcal Total: -68.16 5.54 -62.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260400410.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.411 kcal (2) G-P(sol) polarization free energy of solvation -68.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds