Wall clock time and date at job start Mon Mar 30 2020 05:52:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35900 * 117.00101 * 2 1 4 4 C 1.38756 * 120.05226 * 359.97438 * 3 2 1 5 5 C 1.38123 * 119.93830 * 180.02562 * 4 3 2 6 6 C 1.38289 * 120.06241 * 0.02562 * 5 4 3 7 7 C 1.38251 * 120.10662 * 359.97438 * 6 5 4 8 8 C 1.50699 * 119.96922 * 179.97438 * 7 6 5 9 9 C 1.53000 * 109.47102 * 89.99824 * 8 7 6 10 10 H 1.08996 * 115.55403 * 330.67465 * 9 8 7 11 11 C 1.53002 * 117.51502 * 116.36928 * 9 8 7 12 12 C 1.53000 * 117.50014 * 184.99720 * 9 8 7 13 13 H 1.09004 * 117.49577 * 0.02562 * 12 9 8 14 14 C 1.52997 * 117.50132 * 144.99830 * 12 9 8 15 15 C 1.50701 * 109.47212 * 185.00092 * 14 12 9 16 16 H 1.07998 * 120.00129 * 0.02562 * 15 14 12 17 17 C 1.37880 * 119.99861 * 179.97438 * 15 14 12 18 18 N 1.31510 * 119.99913 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99734 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.47294 * 60.00559 * 19 17 15 21 21 H 1.48503 * 109.46954 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47431 * 300.00157 * 19 17 15 23 23 C 1.38163 * 120.05428 * 0.23441 * 7 6 5 24 24 H 1.09000 * 109.47461 * 300.00650 * 1 2 3 25 25 H 1.09002 * 109.46698 * 60.00549 * 1 2 3 26 26 H 1.09007 * 109.47127 * 180.02562 * 1 2 3 27 27 H 1.07991 * 120.03157 * 0.02562 * 4 3 2 28 28 H 1.08009 * 119.96874 * 179.97438 * 5 4 3 29 29 H 1.07995 * 119.94808 * 179.97438 * 6 5 4 30 30 H 1.09000 * 109.47312 * 329.99970 * 8 7 6 31 31 H 1.08999 * 109.46735 * 209.99642 * 8 7 6 32 32 H 1.08995 * 117.50308 * 359.97438 * 11 9 8 33 33 H 1.09004 * 117.49837 * 214.96778 * 11 9 8 34 34 H 1.09002 * 109.47153 * 65.00094 * 14 12 9 35 35 H 1.09001 * 109.46832 * 305.00284 * 14 12 9 36 36 H 0.97002 * 119.99768 * 179.97438 * 18 17 15 37 37 H 1.08008 * 120.02760 * 179.74598 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 -0.0005 5 6 1.9209 3.6047 -0.0011 6 6 3.3019 3.6758 -0.0016 7 6 4.0560 2.5170 -0.0011 8 6 5.5608 2.5981 -0.0022 9 6 6.0711 2.6270 1.4399 10 1 5.3951 3.0735 2.1690 11 6 6.9396 1.4567 1.9059 12 6 7.5729 2.8265 1.6540 13 1 8.1972 2.9376 0.7674 14 6 8.0107 3.6377 2.8751 15 6 9.5057 3.8253 2.8438 16 1 10.0855 3.4080 2.0338 17 6 10.1332 4.5305 3.8488 18 7 9.4271 5.0390 4.8349 19 14 11.9861 4.7635 3.8096 20 1 12.3679 5.4881 2.5708 21 1 12.4112 5.5508 4.9949 22 1 12.6526 3.4367 3.8324 23 6 3.4311 1.2848 -0.0049 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0277 0.0005 27 1 0.2128 2.3204 -0.0005 28 1 1.3339 4.5114 -0.0019 29 1 3.7922 4.6380 -0.0024 30 1 5.8754 3.5059 -0.5171 31 1 5.9711 1.7285 -0.5155 32 1 7.1472 0.6657 1.1853 33 1 6.8349 1.1334 2.9416 34 1 7.7302 3.1059 3.7843 35 1 7.5219 4.6118 2.8584 36 1 9.8686 5.5348 5.5421 37 1 4.0206 0.3798 -0.0086 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260402458.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:08 Heat of formation + Delta-G solvation = -9.165432 kcal Electronic energy + Delta-G solvation = -16643.194673 eV Core-core repulsion = 13964.824611 eV Total energy + Delta-G solvation = -2678.370063 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.18111 -38.07495 -36.79629 -32.98055 -31.97816 -30.49420 -28.44047 -27.47394 -26.35007 -23.16110 -22.50064 -21.56049 -20.11100 -19.32391 -17.75299 -16.30227 -16.25131 -15.95928 -15.85872 -14.78590 -14.32035 -13.98987 -13.87166 -13.53404 -12.97614 -12.71199 -12.29948 -12.16816 -11.87361 -11.85256 -11.47875 -11.21493 -10.94945 -10.86518 -10.78675 -10.65507 -10.46026 -9.83608 -9.31583 -9.07252 -8.82328 -8.60036 -8.26115 -8.16950 -5.96449 -3.98148 1.34175 1.46866 3.15525 3.35949 3.40022 3.42660 3.77409 4.46109 4.56581 4.70933 4.81805 4.92356 4.94662 5.10380 5.23062 5.33077 5.38586 5.39873 5.49109 5.55976 5.75248 5.81593 5.90153 6.02453 6.17550 6.25257 6.28395 6.40152 6.45071 6.72965 6.77807 6.82525 6.89950 7.15352 7.34132 7.72329 7.82859 8.03030 8.46872 9.07454 9.64997 11.14843 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.048468 B = 0.003555 C = 0.003479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 577.565048 B = 7873.298797 C = 8046.375308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.320 6.320 3 C 0.123 3.877 4 C -0.219 4.219 5 C -0.081 4.081 6 C -0.153 4.153 7 C -0.027 4.027 8 C -0.050 4.050 9 C -0.165 4.165 10 H 0.098 0.902 11 C -0.182 4.182 12 C -0.111 4.111 13 H 0.091 0.909 14 C 0.047 3.953 15 C -0.515 4.515 16 H 0.055 0.945 17 C 0.055 3.945 18 N -0.897 5.897 19 Si 0.893 3.107 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.277 1.277 23 C -0.147 4.147 24 H 0.054 0.946 25 H 0.053 0.947 26 H 0.097 0.903 27 H 0.123 0.877 28 H 0.122 0.878 29 H 0.126 0.874 30 H 0.077 0.923 31 H 0.071 0.929 32 H 0.080 0.920 33 H 0.087 0.913 34 H 0.018 0.982 35 H 0.021 0.979 36 H 0.261 0.739 37 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.446 -6.591 -10.788 21.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.233 6.233 3 C 0.079 3.921 4 C -0.238 4.238 5 C -0.099 4.099 6 C -0.171 4.171 7 C -0.027 4.027 8 C -0.087 4.087 9 C -0.183 4.183 10 H 0.116 0.884 11 C -0.219 4.219 12 C -0.129 4.129 13 H 0.109 0.891 14 C 0.010 3.990 15 C -0.553 4.553 16 H 0.073 0.927 17 C -0.146 4.146 18 N -0.537 5.537 19 Si 0.721 3.279 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.203 1.203 23 C -0.166 4.166 24 H 0.073 0.927 25 H 0.072 0.928 26 H 0.116 0.884 27 H 0.141 0.859 28 H 0.140 0.860 29 H 0.144 0.856 30 H 0.095 0.905 31 H 0.089 0.911 32 H 0.098 0.902 33 H 0.105 0.895 34 H 0.037 0.963 35 H 0.039 0.961 36 H 0.070 0.930 37 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -17.349 -6.684 -10.621 21.412 hybrid contribution 0.640 0.276 0.161 0.715 sum -16.709 -6.408 -10.460 20.728 Atomic orbital electron populations 1.23014 0.78729 1.03678 1.01223 1.86066 1.21115 1.27209 1.88933 1.19008 0.92321 0.83977 0.96832 1.21144 0.99653 0.92523 1.10465 1.20904 0.94642 0.96816 0.97513 1.21052 0.93600 0.98446 1.04005 1.19781 0.96121 0.91931 0.94878 1.20234 0.89446 1.02667 0.96325 1.22306 0.95599 1.04958 0.95474 0.88409 1.23096 1.05437 0.92076 1.01291 1.22816 0.91156 0.96980 1.01993 0.89063 1.18766 0.95877 0.94212 0.90154 1.21209 0.92546 1.33533 1.08049 0.92667 1.25026 0.98202 0.95788 0.95566 1.69956 1.35513 1.36424 1.11769 0.86650 0.85749 0.78181 0.77365 1.20250 1.21338 1.20265 1.20321 0.91063 0.98450 1.06746 0.92745 0.92839 0.88441 0.85915 0.85972 0.85643 0.90484 0.91070 0.90172 0.89476 0.96339 0.96075 0.92975 0.85315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.81 101.05 0.99 1.21 16 2 O -0.32 -3.85 10.50 -19.43 -0.20 -4.05 16 3 C 0.12 1.60 6.69 -39.22 -0.26 1.34 16 4 C -0.22 -2.51 9.04 -39.43 -0.36 -2.87 16 5 C -0.08 -0.93 10.04 -39.60 -0.40 -1.33 16 6 C -0.15 -1.99 9.70 -39.56 -0.38 -2.37 16 7 C -0.03 -0.38 5.09 -104.65 -0.53 -0.91 16 8 C -0.05 -0.72 5.63 -27.88 -0.16 -0.88 16 9 C -0.17 -2.91 5.44 -90.62 -0.49 -3.41 16 10 H 0.10 1.82 8.07 -51.93 -0.42 1.41 16 11 C -0.18 -3.33 9.82 -26.73 -0.26 -3.60 16 12 C -0.11 -2.34 5.41 -90.62 -0.49 -2.84 16 13 H 0.09 1.89 8.00 -51.93 -0.42 1.48 16 14 C 0.05 1.23 5.25 -27.88 -0.15 1.08 16 15 C -0.52 -14.76 9.08 -34.44 -0.31 -15.07 16 16 H 0.06 1.53 7.68 -52.49 -0.40 1.13 16 17 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 18 N -0.90 -27.28 13.29 55.43 0.74 -26.54 16 19 Si 0.89 21.87 29.54 -169.99 -5.02 16.85 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 21 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 22 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 23 C -0.15 -2.03 9.64 -39.43 -0.38 -2.41 16 24 H 0.05 0.37 7.66 -51.93 -0.40 -0.03 16 25 H 0.05 0.34 7.66 -51.93 -0.40 -0.05 16 26 H 0.10 0.53 8.14 -51.92 -0.42 0.11 16 27 H 0.12 1.10 6.30 -52.49 -0.33 0.76 16 28 H 0.12 1.11 8.06 -52.48 -0.42 0.68 16 29 H 0.13 1.51 8.06 -52.49 -0.42 1.09 16 30 H 0.08 1.08 8.08 -51.93 -0.42 0.66 16 31 H 0.07 0.96 7.82 -51.93 -0.41 0.56 16 32 H 0.08 1.30 8.03 -51.93 -0.42 0.88 16 33 H 0.09 1.65 8.03 -51.93 -0.42 1.23 16 34 H 0.02 0.51 7.88 -51.93 -0.41 0.11 16 35 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.26 7.48 8.31 -40.82 -0.34 7.15 16 37 H 0.13 1.70 8.06 -52.48 -0.42 1.28 16 LS Contribution 314.72 15.07 4.74 4.74 Total: -1.00 -31.31 314.72 -8.71 -40.02 By element: Atomic # 1 Polarization: 5.20 SS G_CDS: -5.68 Total: -0.48 kcal Atomic # 6 Polarization: -27.26 SS G_CDS: -3.28 Total: -30.54 kcal Atomic # 7 Polarization: -27.28 SS G_CDS: 0.74 Total: -26.54 kcal Atomic # 8 Polarization: -3.85 SS G_CDS: -0.20 Total: -4.05 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -31.31 -8.71 -40.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260402458.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.857 kcal (2) G-P(sol) polarization free energy of solvation -31.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds