Wall clock time and date at job start Mon Mar 30 2020 05:52:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35895 * 117.00245 * 2 1 4 4 C 1.38736 * 120.05949 * 180.02562 * 3 2 1 5 5 C 1.38144 * 119.94612 * 180.02562 * 4 3 2 6 6 C 1.38269 * 120.05397 * 359.97110 * 5 4 3 7 7 C 1.50703 * 119.94232 * 180.02562 * 6 5 4 8 8 C 1.52996 * 109.47226 * 89.99848 * 7 6 5 9 9 H 1.09005 * 115.56241 * 330.68908 * 8 7 6 10 10 C 1.53001 * 117.49910 * 116.37604 * 8 7 6 11 11 C 1.52996 * 117.50045 * 184.99972 * 8 7 6 12 12 H 1.09009 * 117.51559 * 359.97438 * 11 8 7 13 13 C 1.52996 * 117.50131 * 145.01888 * 11 8 7 14 14 C 1.50702 * 109.47159 * 185.01404 * 13 11 8 15 15 H 1.08002 * 120.00299 * 0.02562 * 14 13 11 16 16 C 1.37884 * 119.99942 * 179.72211 * 14 13 11 17 17 N 1.31514 * 119.99698 * 0.28408 * 16 14 13 18 18 Si 1.86794 * 119.99837 * 180.27476 * 16 14 13 19 19 H 1.48504 * 109.47196 * 60.00645 * 18 16 14 20 20 H 1.48504 * 109.46887 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47679 * 300.00280 * 18 16 14 22 22 C 1.38257 * 120.11079 * 0.29647 * 6 5 4 23 23 C 1.38145 * 120.05771 * 359.45517 * 22 6 5 24 24 H 1.08999 * 109.46702 * 299.99492 * 1 2 3 25 25 H 1.08997 * 109.47358 * 59.99544 * 1 2 3 26 26 H 1.09001 * 109.47124 * 180.02562 * 1 2 3 27 27 H 1.08003 * 120.02619 * 0.03868 * 4 3 2 28 28 H 1.07995 * 119.96863 * 179.97438 * 5 4 3 29 29 H 1.08999 * 109.46650 * 329.99917 * 7 6 5 30 30 H 1.09001 * 109.46730 * 210.00065 * 7 6 5 31 31 H 1.08997 * 117.49602 * 0.02562 * 10 8 7 32 32 H 1.08998 * 117.52111 * 214.96647 * 10 8 7 33 33 H 1.09004 * 109.47066 * 65.01607 * 13 11 8 34 34 H 1.08994 * 109.47405 * 305.01437 * 13 11 8 35 35 H 0.97005 * 119.99651 * 179.97438 * 17 16 14 36 36 H 1.08005 * 119.97038 * 179.70595 * 22 6 5 37 37 H 1.08008 * 120.02776 * 180.24683 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4314 1.2848 -0.0005 5 6 4.0562 2.5169 0.0000 6 6 3.3019 3.6758 0.0005 7 6 3.9861 5.0185 0.0005 8 6 4.2172 5.4732 -1.4420 9 1 4.3501 4.6741 -2.1714 10 6 3.4987 6.7416 -1.9066 11 6 5.0081 6.7650 -1.6574 12 1 5.3636 7.2915 -0.7716 13 6 5.9250 6.8365 -2.8801 14 6 6.7029 8.1269 -2.8500 15 1 6.5582 8.8259 -2.0395 16 6 7.6041 8.4122 -3.8538 17 7 7.7806 7.5608 -4.8405 18 14 8.5739 10.0081 -3.8123 19 1 9.3898 10.0595 -2.5726 20 1 9.4673 10.0753 -4.9966 21 1 7.6352 11.1587 -3.8351 22 6 1.9212 3.6047 0.0066 23 6 1.2916 2.3751 0.0009 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 4.0209 0.3799 -0.0016 28 1 5.1346 2.5749 0.0000 29 1 4.9442 4.9380 0.5140 30 1 3.3583 5.7462 0.5147 31 1 2.8618 7.2523 -1.1845 32 1 3.1590 6.7775 -2.9417 33 1 5.3234 6.7961 -3.7882 34 1 6.6171 5.9946 -2.8650 35 1 8.4143 7.7618 -5.5469 36 1 1.3343 4.5114 0.0117 37 1 0.2129 2.3202 0.0016 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260409238.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:15 Heat of formation + Delta-G solvation = -9.292051 kcal Electronic energy + Delta-G solvation = -16584.135694 eV Core-core repulsion = 13905.760140 eV Total energy + Delta-G solvation = -2678.375553 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.18005 -38.11945 -36.76738 -32.91089 -31.62065 -31.04120 -28.49395 -27.65741 -25.84458 -23.16620 -22.60797 -21.57501 -20.06824 -19.32416 -18.21817 -16.28377 -16.26758 -15.87191 -15.48428 -14.62502 -14.32342 -13.97161 -13.94714 -13.52092 -13.31145 -12.72514 -12.30005 -12.18056 -11.96485 -11.86585 -11.36605 -11.21813 -10.96107 -10.80651 -10.74025 -10.66348 -10.45745 -9.82916 -9.30662 -9.06170 -8.97705 -8.70331 -8.27972 -7.99975 -5.96871 -3.98617 1.35398 1.44321 3.15595 3.35445 3.39603 3.42143 3.76811 4.45935 4.56379 4.71517 4.83999 4.91856 4.93724 5.01534 5.22102 5.35024 5.39224 5.40991 5.50484 5.62846 5.71576 5.81938 5.92268 5.98737 6.18507 6.23083 6.28976 6.37192 6.42105 6.74414 6.78421 6.82103 6.90146 7.15035 7.32064 7.71985 7.82344 8.02586 8.46432 9.06988 9.64527 11.14402 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.052557 B = 0.003432 C = 0.003369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 532.626941 B = 8155.893145 C = 8309.317666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.321 6.321 3 C 0.112 3.888 4 C -0.150 4.150 5 C -0.077 4.077 6 C -0.101 4.101 7 C -0.045 4.045 8 C -0.165 4.165 9 H 0.097 0.903 10 C -0.183 4.183 11 C -0.112 4.112 12 H 0.091 0.909 13 C 0.047 3.953 14 C -0.515 4.515 15 H 0.055 0.945 16 C 0.055 3.945 17 N -0.897 5.897 18 Si 0.893 3.107 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.277 1.277 22 C -0.077 4.077 23 C -0.207 4.207 24 H 0.053 0.947 25 H 0.054 0.946 26 H 0.097 0.903 27 H 0.128 0.872 28 H 0.131 0.869 29 H 0.073 0.927 30 H 0.067 0.933 31 H 0.079 0.921 32 H 0.086 0.914 33 H 0.018 0.982 34 H 0.021 0.979 35 H 0.261 0.739 36 H 0.123 0.877 37 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.801 -12.281 10.833 21.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.235 6.235 3 C 0.068 3.932 4 C -0.168 4.168 5 C -0.095 4.095 6 C -0.102 4.102 7 C -0.082 4.082 8 C -0.183 4.183 9 H 0.115 0.885 10 C -0.220 4.220 11 C -0.130 4.130 12 H 0.109 0.891 13 C 0.010 3.990 14 C -0.554 4.554 15 H 0.073 0.927 16 C -0.146 4.146 17 N -0.536 5.536 18 Si 0.721 3.279 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.203 1.203 22 C -0.095 4.095 23 C -0.226 4.226 24 H 0.072 0.928 25 H 0.073 0.927 26 H 0.115 0.885 27 H 0.146 0.854 28 H 0.149 0.851 29 H 0.091 0.909 30 H 0.086 0.914 31 H 0.097 0.903 32 H 0.105 0.895 33 H 0.036 0.964 34 H 0.039 0.961 35 H 0.070 0.930 36 H 0.141 0.859 37 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -13.621 -12.500 10.667 21.344 hybrid contribution 0.195 0.989 -0.164 1.022 sum -13.426 -11.511 10.503 20.569 Atomic orbital electron populations 1.23010 0.78716 1.03641 1.01293 1.86045 1.21136 1.27243 1.89092 1.19005 0.92398 0.83972 0.97856 1.20413 0.91272 0.98650 1.06489 1.20954 1.00163 0.90917 0.97514 1.19905 0.93454 0.95564 1.01231 1.20142 0.99759 0.92345 0.95942 1.22351 1.07870 0.92331 0.95762 0.88478 1.23086 0.96929 1.00837 1.01194 1.22808 0.91956 0.96286 1.01964 0.89120 1.18762 0.93093 0.97015 0.90128 1.21211 1.21984 1.04091 1.08074 0.92688 1.25029 0.97107 0.96872 0.95575 1.69958 1.36111 1.35801 1.11776 0.86650 0.79942 0.83974 0.77379 1.20248 1.21328 1.20277 1.20849 0.94152 0.96864 0.97634 1.21180 0.99718 0.92432 1.09243 0.92827 0.92711 0.88476 0.85419 0.85105 0.90857 0.91437 0.90284 0.89549 0.96376 0.96074 0.92967 0.85867 0.85817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.81 101.05 0.99 1.20 16 2 O -0.32 -3.71 10.50 -19.41 -0.20 -3.92 16 3 C 0.11 1.41 6.69 -39.22 -0.26 1.15 16 4 C -0.15 -1.89 9.99 -39.43 -0.39 -2.28 16 5 C -0.08 -1.01 9.69 -39.60 -0.38 -1.39 16 6 C -0.10 -1.37 5.09 -104.60 -0.53 -1.90 16 7 C -0.04 -0.64 5.62 -27.88 -0.16 -0.79 16 8 C -0.16 -2.88 5.44 -90.62 -0.49 -3.37 16 9 H 0.10 1.80 8.07 -51.93 -0.42 1.38 16 10 C -0.18 -3.31 9.82 -26.73 -0.26 -3.57 16 11 C -0.11 -2.35 5.41 -90.62 -0.49 -2.84 16 12 H 0.09 1.88 8.00 -51.92 -0.42 1.46 16 13 C 0.05 1.23 5.25 -27.88 -0.15 1.08 16 14 C -0.52 -14.75 9.08 -34.44 -0.31 -15.06 16 15 H 0.05 1.52 7.68 -52.49 -0.40 1.12 16 16 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 17 N -0.90 -27.26 13.29 55.43 0.74 -26.53 16 18 Si 0.89 21.85 29.54 -169.99 -5.02 16.83 16 19 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 20 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 22 C -0.08 -0.96 9.69 -39.61 -0.38 -1.34 16 23 C -0.21 -2.42 9.04 -39.43 -0.36 -2.78 16 24 H 0.05 0.34 7.66 -51.93 -0.40 -0.05 16 25 H 0.05 0.37 7.66 -51.93 -0.40 -0.03 16 26 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 27 H 0.13 1.42 8.06 -52.48 -0.42 0.99 16 28 H 0.13 1.55 8.06 -52.49 -0.42 1.13 16 29 H 0.07 1.02 8.08 -51.93 -0.42 0.60 16 30 H 0.07 0.89 7.82 -51.93 -0.41 0.48 16 31 H 0.08 1.25 8.03 -51.93 -0.42 0.84 16 32 H 0.09 1.61 8.03 -51.93 -0.42 1.20 16 33 H 0.02 0.50 7.88 -51.93 -0.41 0.09 16 34 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 36 H 0.12 1.36 8.06 -52.48 -0.42 0.94 16 37 H 0.12 1.15 6.30 -52.48 -0.33 0.82 16 LS Contribution 314.72 15.07 4.74 4.74 Total: -1.00 -31.26 314.72 -8.71 -39.97 By element: Atomic # 1 Polarization: 4.99 SS G_CDS: -5.68 Total: -0.69 kcal Atomic # 6 Polarization: -27.12 SS G_CDS: -3.28 Total: -30.40 kcal Atomic # 7 Polarization: -27.26 SS G_CDS: 0.74 Total: -26.53 kcal Atomic # 8 Polarization: -3.71 SS G_CDS: -0.20 Total: -3.92 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -31.26 -8.71 -39.97 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260409238.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.678 kcal (2) G-P(sol) polarization free energy of solvation -31.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds