Wall clock time and date at job start Mon Mar 30 2020 05:46:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.47167 * 2 1 4 4 O 1.42899 * 109.47030 * 120.00125 * 2 1 3 5 5 C 1.52999 * 109.47367 * 240.00188 * 2 1 3 6 6 C 1.50702 * 109.47301 * 174.95240 * 5 2 1 7 7 C 1.38252 * 119.99981 * 287.08384 * 6 5 2 8 8 C 1.38217 * 119.99948 * 179.97438 * 7 6 5 9 9 C 1.38261 * 119.99818 * 359.97438 * 8 7 6 10 10 C 1.38215 * 119.99687 * 359.73877 * 9 8 7 11 11 C 1.38210 * 119.99771 * 107.06190 * 6 5 2 12 12 C 1.50706 * 120.00138 * 0.02562 * 11 6 5 13 13 C 1.50697 * 115.54736 * 65.75831 * 12 11 6 14 14 H 1.08003 * 120.00301 * 271.72508 * 13 12 11 15 15 C 1.37885 * 119.99961 * 91.72556 * 13 12 11 16 16 N 1.31508 * 119.99790 * 184.06557 * 15 13 12 17 17 Si 1.86801 * 119.99630 * 4.34233 * 15 13 12 18 18 H 1.48496 * 109.47402 * 87.45632 * 17 15 13 19 19 H 1.48506 * 109.46750 * 207.45218 * 17 15 13 20 20 H 1.48499 * 109.47054 * 327.45201 * 17 15 13 21 21 C 1.52997 * 117.49915 * 211.43014 * 12 11 6 22 22 C 1.53001 * 117.50012 * 280.09121 * 12 11 6 23 23 H 1.09004 * 109.46751 * 184.51119 * 1 2 3 24 24 H 1.08997 * 109.47457 * 304.51506 * 1 2 3 25 25 H 1.08999 * 109.46956 * 64.51527 * 1 2 3 26 26 H 0.96699 * 113.99664 * 52.45283 * 4 2 1 27 27 H 1.09004 * 109.46699 * 54.95104 * 5 2 1 28 28 H 1.08994 * 109.46875 * 294.95602 * 5 2 1 29 29 H 1.08002 * 120.00286 * 359.97438 * 7 6 5 30 30 H 1.08002 * 119.99974 * 179.97438 * 8 7 6 31 31 H 1.08002 * 119.99745 * 179.97438 * 9 8 7 32 32 H 1.07998 * 119.99375 * 180.27376 * 10 9 8 33 33 H 0.97006 * 119.99709 * 185.01680 * 16 15 13 34 34 H 1.09000 * 117.50003 * 215.00728 * 21 12 11 35 35 H 1.09003 * 117.49812 * 0.02562 * 21 12 11 36 36 H 1.08998 * 117.49666 * 359.97438 * 22 12 11 37 37 H 1.08998 * 117.49583 * 144.99677 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 2.0401 -0.7212 -1.2492 6 6 3.5419 -0.6138 -1.3133 7 6 4.1354 0.5906 -1.6424 8 6 5.5128 0.6892 -1.7007 9 6 6.2971 -0.4166 -1.4293 10 6 5.7038 -1.6192 -1.0945 11 6 4.3259 -1.7194 -1.0426 12 6 3.6789 -3.0324 -0.6839 13 6 2.8676 -3.6774 -1.7779 14 1 1.8221 -3.4315 -1.8915 15 6 3.4601 -4.5817 -2.6338 16 7 2.7742 -5.0840 -3.6371 17 14 5.2345 -5.0990 -2.3635 18 1 5.2772 -6.2517 -1.4282 19 1 5.8386 -5.4925 -3.6618 20 1 5.9984 -3.9642 -1.7857 21 6 4.4373 -3.9560 0.2715 22 6 3.1914 -3.2099 0.7554 23 1 -0.3633 -1.0245 0.0808 24 1 -0.3634 0.5823 0.8467 25 1 -0.3633 0.4422 -0.9277 26 1 1.6298 -1.5554 1.2930 27 1 1.6048 -0.2622 -2.1369 28 1 1.7524 -1.7716 -1.2052 29 1 3.5228 1.4546 -1.8540 30 1 5.9765 1.6301 -1.9582 31 1 7.3734 -0.3397 -1.4752 32 1 6.3166 -2.4818 -0.8782 33 1 3.1661 -5.7737 -4.1954 34 1 4.3495 -5.0302 0.1087 35 1 5.4040 -3.6137 0.6409 36 1 3.3390 -2.3771 1.4430 37 1 2.2838 -3.7932 0.9110 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260439917.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:55 Heat of formation + Delta-G solvation = -7.471006 kcal Electronic energy + Delta-G solvation = -18599.890668 eV Core-core repulsion = 15921.594081 eV Total energy + Delta-G solvation = -2678.296587 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.40384 -36.95239 -36.16080 -32.44401 -32.08465 -30.02023 -29.79691 -25.99469 -25.85028 -22.82028 -22.06662 -21.02639 -20.37952 -18.98356 -16.86378 -16.06028 -15.43355 -15.31066 -14.94540 -14.20072 -13.97871 -13.90797 -13.71139 -12.96477 -12.73099 -12.60761 -12.00923 -11.85788 -11.69097 -11.27250 -11.19942 -11.02821 -10.75424 -10.47097 -10.32919 -10.30558 -9.77797 -9.63332 -9.51532 -9.31836 -8.67191 -8.43451 -8.02361 -7.62590 -6.15014 -4.19264 2.09412 2.17292 3.29821 3.41208 3.44866 4.41157 4.45543 4.78744 4.95438 5.15623 5.21158 5.35827 5.53132 5.56624 5.61011 5.64114 5.81691 5.94469 6.03025 6.08109 6.09391 6.19826 6.29135 6.30505 6.42633 6.51091 6.60043 6.67643 6.72355 6.90393 7.07399 7.11713 7.14057 7.29652 7.59469 7.70253 7.79981 8.08067 8.40788 8.83188 9.47795 10.95136 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.019215 B = 0.010934 C = 0.008875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.873853 B = 2560.245810 C = 3154.255193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.110 3.890 3 H 0.087 0.913 4 O -0.561 6.561 5 C -0.123 4.123 6 C -0.054 4.054 7 C -0.127 4.127 8 C -0.143 4.143 9 C -0.133 4.133 10 C -0.130 4.130 11 C -0.004 4.004 12 C 0.038 3.962 13 C -0.483 4.483 14 H 0.082 0.918 15 C 0.080 3.920 16 N -0.895 5.895 17 Si 0.873 3.127 18 H -0.281 1.281 19 H -0.300 1.300 20 H -0.243 1.243 21 C -0.204 4.204 22 C -0.182 4.182 23 H 0.061 0.939 24 H 0.056 0.944 25 H 0.063 0.937 26 H 0.374 0.626 27 H 0.068 0.932 28 H 0.110 0.890 29 H 0.109 0.891 30 H 0.108 0.892 31 H 0.108 0.892 32 H 0.119 0.881 33 H 0.265 0.735 34 H 0.087 0.913 35 H 0.074 0.926 36 H 0.090 0.910 37 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.530 8.734 6.218 10.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.051 3.949 3 H 0.105 0.895 4 O -0.369 6.369 5 C -0.160 4.160 6 C -0.054 4.054 7 C -0.146 4.146 8 C -0.161 4.161 9 C -0.151 4.151 10 C -0.148 4.148 11 C -0.005 4.005 12 C 0.037 3.963 13 C -0.520 4.520 14 H 0.100 0.900 15 C -0.123 4.123 16 N -0.531 5.531 17 Si 0.702 3.298 18 H -0.208 1.208 19 H -0.227 1.227 20 H -0.167 1.167 21 C -0.241 4.241 22 C -0.219 4.219 23 H 0.080 0.920 24 H 0.075 0.925 25 H 0.082 0.918 26 H 0.223 0.777 27 H 0.087 0.913 28 H 0.129 0.871 29 H 0.127 0.873 30 H 0.126 0.874 31 H 0.126 0.874 32 H 0.137 0.863 33 H 0.075 0.925 34 H 0.105 0.895 35 H 0.093 0.907 36 H 0.109 0.891 37 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 0.877 9.199 6.078 11.060 hybrid contribution 0.716 -0.940 -0.295 1.218 sum 1.593 8.260 5.783 10.208 Atomic orbital electron populations 1.22537 0.97046 1.02625 1.02070 1.21835 0.91814 0.96019 0.85248 0.89527 1.86565 1.71202 1.34244 1.44880 1.21516 0.92253 1.04968 0.97234 1.19383 0.95193 0.92407 0.98388 1.20848 0.94574 0.97085 1.02049 1.20826 0.93897 0.97992 1.03403 1.20944 0.98809 0.93519 1.01833 1.21238 0.95063 0.97148 1.01332 1.19615 0.92107 0.94177 0.94585 1.18121 0.97919 0.90259 0.90029 1.20241 0.96490 1.23898 1.11364 0.89983 1.24981 0.97794 0.95865 0.93646 1.69895 1.38559 1.27580 1.17079 0.87004 0.86191 0.79943 0.76644 1.20758 1.22713 1.16742 1.23006 0.95149 0.98517 1.07451 1.23117 0.97498 1.02199 0.99066 0.92006 0.92461 0.91797 0.77651 0.91309 0.87137 0.87292 0.87380 0.87391 0.86342 0.92520 0.89496 0.90729 0.89141 0.89647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.31 9.47 37.16 0.35 -1.96 16 2 C 0.11 1.64 3.56 -26.73 -0.10 1.55 16 3 H 0.09 1.26 7.94 -51.93 -0.41 0.85 16 4 O -0.56 -9.07 11.29 -35.23 -0.40 -9.47 16 5 C -0.12 -2.18 4.80 -27.88 -0.13 -2.31 16 6 C -0.05 -1.06 4.94 -104.63 -0.52 -1.57 16 7 C -0.13 -2.25 9.48 -39.58 -0.38 -2.63 16 8 C -0.14 -2.43 10.05 -39.58 -0.40 -2.83 16 9 C -0.13 -2.39 10.05 -39.58 -0.40 -2.79 16 10 C -0.13 -2.66 8.45 -39.58 -0.33 -3.00 16 11 C 0.00 -0.09 5.11 -104.62 -0.53 -0.63 16 12 C 0.04 0.83 0.16 -156.81 -0.03 0.81 16 13 C -0.48 -12.66 8.34 -34.44 -0.29 -12.94 16 14 H 0.08 2.29 6.75 -52.48 -0.35 1.94 16 15 C 0.08 2.23 5.47 -17.82 -0.10 2.13 16 16 N -0.89 -26.50 13.95 55.43 0.77 -25.73 16 17 Si 0.87 21.29 24.81 -169.99 -4.22 17.07 16 18 H -0.28 -6.73 6.94 56.52 0.39 -6.34 16 19 H -0.30 -7.53 7.11 56.52 0.40 -7.13 16 20 H -0.24 -5.54 3.77 56.52 0.21 -5.33 16 21 C -0.20 -4.26 6.72 -26.69 -0.18 -4.44 16 22 C -0.18 -3.49 7.90 -26.69 -0.21 -3.70 16 23 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 24 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 25 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.37 5.48 6.79 45.56 0.31 5.79 16 27 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 28 H 0.11 2.23 4.35 -51.93 -0.23 2.00 16 29 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 30 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 31 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 32 H 0.12 2.41 5.15 -52.49 -0.27 2.14 16 33 H 0.27 7.46 8.32 -40.82 -0.34 7.12 16 34 H 0.09 1.90 6.27 -51.93 -0.33 1.57 16 35 H 0.07 1.46 7.13 -51.93 -0.37 1.09 16 36 H 0.09 1.63 6.18 -51.93 -0.32 1.31 16 37 H 0.09 1.57 8.14 -51.93 -0.42 1.15 16 LS Contribution 286.12 15.07 4.31 4.31 Total: -1.00 -29.38 286.12 -7.45 -36.83 By element: Atomic # 1 Polarization: 15.97 SS G_CDS: -4.69 Total: 11.29 kcal Atomic # 6 Polarization: -31.07 SS G_CDS: -3.23 Total: -34.30 kcal Atomic # 7 Polarization: -26.50 SS G_CDS: 0.77 Total: -25.73 kcal Atomic # 8 Polarization: -9.07 SS G_CDS: -0.40 Total: -9.47 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -4.22 Total: 17.07 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -29.38 -7.45 -36.83 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260439917.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.358 kcal (2) G-P(sol) polarization free energy of solvation -29.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds