Wall clock time and date at job start Mon Mar 30 2020 05:46:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.47167 * 2 1 4 4 O 1.42899 * 109.47030 * 120.00125 * 2 1 3 5 5 C 1.52999 * 109.47367 * 240.00188 * 2 1 3 6 6 C 1.50702 * 109.47301 * 174.95240 * 5 2 1 7 7 C 1.38252 * 119.99981 * 287.08384 * 6 5 2 8 8 C 1.38217 * 119.99948 * 179.97438 * 7 6 5 9 9 C 1.38261 * 119.99818 * 359.97438 * 8 7 6 10 10 C 1.38215 * 119.99687 * 359.73877 * 9 8 7 11 11 C 1.38210 * 119.99771 * 107.06190 * 6 5 2 12 12 C 1.50706 * 120.00138 * 0.02562 * 11 6 5 13 13 C 1.50697 * 115.54736 * 65.75831 * 12 11 6 14 14 H 1.08003 * 120.00301 * 271.72508 * 13 12 11 15 15 C 1.37885 * 119.99961 * 91.72556 * 13 12 11 16 16 N 1.31508 * 119.99790 * 184.06557 * 15 13 12 17 17 Si 1.86801 * 119.99630 * 4.34233 * 15 13 12 18 18 H 1.48496 * 109.47402 * 87.45632 * 17 15 13 19 19 H 1.48506 * 109.46750 * 207.45218 * 17 15 13 20 20 H 1.48499 * 109.47054 * 327.45201 * 17 15 13 21 21 C 1.52997 * 117.49915 * 211.43014 * 12 11 6 22 22 C 1.53001 * 117.50012 * 280.09121 * 12 11 6 23 23 H 1.09004 * 109.46751 * 184.51119 * 1 2 3 24 24 H 1.08997 * 109.47457 * 304.51506 * 1 2 3 25 25 H 1.08999 * 109.46956 * 64.51527 * 1 2 3 26 26 H 0.96699 * 113.99664 * 52.45283 * 4 2 1 27 27 H 1.09004 * 109.46699 * 54.95104 * 5 2 1 28 28 H 1.08994 * 109.46875 * 294.95602 * 5 2 1 29 29 H 1.08002 * 120.00286 * 359.97438 * 7 6 5 30 30 H 1.08002 * 119.99974 * 179.97438 * 8 7 6 31 31 H 1.08002 * 119.99745 * 179.97438 * 9 8 7 32 32 H 1.07998 * 119.99375 * 180.27376 * 10 9 8 33 33 H 0.97006 * 119.99709 * 185.01680 * 16 15 13 34 34 H 1.09000 * 117.50003 * 215.00728 * 21 12 11 35 35 H 1.09003 * 117.49812 * 0.02562 * 21 12 11 36 36 H 1.08998 * 117.49666 * 359.97438 * 22 12 11 37 37 H 1.08998 * 117.49583 * 144.99677 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 2.0401 -0.7212 -1.2492 6 6 3.5419 -0.6138 -1.3133 7 6 4.1354 0.5906 -1.6424 8 6 5.5128 0.6892 -1.7007 9 6 6.2971 -0.4166 -1.4293 10 6 5.7038 -1.6192 -1.0945 11 6 4.3259 -1.7194 -1.0426 12 6 3.6789 -3.0324 -0.6839 13 6 2.8676 -3.6774 -1.7779 14 1 1.8221 -3.4315 -1.8915 15 6 3.4601 -4.5817 -2.6338 16 7 2.7742 -5.0840 -3.6371 17 14 5.2345 -5.0990 -2.3635 18 1 5.2772 -6.2517 -1.4282 19 1 5.8386 -5.4925 -3.6618 20 1 5.9984 -3.9642 -1.7857 21 6 4.4373 -3.9560 0.2715 22 6 3.1914 -3.2099 0.7554 23 1 -0.3633 -1.0245 0.0808 24 1 -0.3634 0.5823 0.8467 25 1 -0.3633 0.4422 -0.9277 26 1 1.6298 -1.5554 1.2930 27 1 1.6048 -0.2622 -2.1369 28 1 1.7524 -1.7716 -1.2052 29 1 3.5228 1.4546 -1.8540 30 1 5.9765 1.6301 -1.9582 31 1 7.3734 -0.3397 -1.4752 32 1 6.3166 -2.4818 -0.8782 33 1 3.1661 -5.7737 -4.1954 34 1 4.3495 -5.0302 0.1087 35 1 5.4040 -3.6137 0.6409 36 1 3.3390 -2.3771 1.4430 37 1 2.2838 -3.7932 0.9110 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260439917.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:54 Heat of formation + Delta-G solvation = -25.485468 kcal Electronic energy + Delta-G solvation = -18600.671834 eV Core-core repulsion = 15921.594081 eV Total energy + Delta-G solvation = -2679.077752 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.86687 -38.20550 -37.76396 -34.23445 -33.71190 -31.28772 -31.17695 -27.85224 -27.28288 -24.35746 -23.50120 -22.48467 -21.75949 -20.66701 -18.69265 -17.38720 -16.96342 -16.76002 -16.59414 -15.61081 -15.45509 -15.33377 -15.08115 -14.71842 -14.31145 -14.16184 -13.37914 -13.16755 -13.08965 -12.88273 -12.76863 -12.52612 -12.32682 -12.02239 -11.86369 -11.69877 -11.35737 -11.33054 -11.13270 -10.87431 -10.62092 -10.21266 -9.45028 -9.10063 -8.27699 -6.32852 0.66962 0.74118 1.34046 1.40347 1.51308 2.39344 2.98216 3.12097 3.29726 3.63286 3.95896 4.09679 4.13285 4.31173 4.33641 4.42245 4.42761 4.47852 4.57762 4.63673 4.82177 4.86387 4.91855 4.98569 5.08581 5.11025 5.18211 5.22424 5.35778 5.46620 5.52184 5.60605 5.67566 5.75126 5.87524 6.11124 6.33117 6.37562 6.74800 6.89296 7.36677 8.85644 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.019215 B = 0.010934 C = 0.008875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.873853 B = 2560.245810 C = 3154.255193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.116 3.884 3 H 0.097 0.903 4 O -0.572 6.572 5 C -0.120 4.120 6 C -0.072 4.072 7 C -0.132 4.132 8 C -0.137 4.137 9 C -0.136 4.136 10 C -0.151 4.151 11 C -0.034 4.034 12 C 0.023 3.977 13 C -0.468 4.468 14 H 0.050 0.950 15 C 0.024 3.976 16 N -0.946 5.946 17 Si 0.922 3.078 18 H -0.275 1.275 19 H -0.313 1.313 20 H -0.218 1.218 21 C -0.207 4.207 22 C -0.157 4.157 23 H 0.055 0.945 24 H 0.073 0.927 25 H 0.073 0.927 26 H 0.378 0.622 27 H 0.072 0.928 28 H 0.080 0.920 29 H 0.137 0.863 30 H 0.145 0.855 31 H 0.137 0.863 32 H 0.114 0.886 33 H 0.262 0.738 34 H 0.074 0.926 35 H 0.091 0.909 36 H 0.108 0.892 37 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.763 11.069 7.509 13.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.057 3.943 3 H 0.115 0.885 4 O -0.380 6.380 5 C -0.157 4.157 6 C -0.072 4.072 7 C -0.150 4.150 8 C -0.155 4.155 9 C -0.154 4.154 10 C -0.168 4.168 11 C -0.034 4.034 12 C 0.022 3.978 13 C -0.505 4.505 14 H 0.068 0.932 15 C -0.174 4.174 16 N -0.586 5.586 17 Si 0.749 3.251 18 H -0.201 1.201 19 H -0.241 1.241 20 H -0.141 1.141 21 C -0.244 4.244 22 C -0.193 4.193 23 H 0.074 0.926 24 H 0.092 0.908 25 H 0.092 0.908 26 H 0.228 0.772 27 H 0.090 0.910 28 H 0.098 0.902 29 H 0.154 0.846 30 H 0.163 0.837 31 H 0.154 0.846 32 H 0.132 0.868 33 H 0.071 0.929 34 H 0.092 0.908 35 H 0.110 0.890 36 H 0.126 0.874 37 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 2.113 11.549 7.403 13.880 hybrid contribution 0.266 -1.557 -0.682 1.720 sum 2.378 9.993 6.721 12.275 Atomic orbital electron populations 1.22478 0.95175 1.02721 1.03337 1.21840 0.93242 0.95757 0.83467 0.88470 1.86533 1.71701 1.34628 1.45173 1.21471 0.91778 1.03476 0.98977 1.19686 0.95900 0.92959 0.98686 1.21217 0.95533 0.97137 1.01074 1.21286 0.93626 0.99147 1.01438 1.21298 1.00519 0.92813 1.00796 1.21350 0.94700 0.98272 1.02524 1.19594 0.92927 0.94086 0.96804 1.17927 0.98846 0.91180 0.89870 1.20448 0.95651 1.22801 1.11623 0.93156 1.25723 1.01363 0.96584 0.93713 1.70030 1.40449 1.29206 1.18932 0.86232 0.82362 0.80507 0.76010 1.20090 1.24124 1.14116 1.23029 0.96589 0.97636 1.07142 1.23095 0.96925 1.02005 0.97311 0.92606 0.90822 0.90812 0.77218 0.90966 0.90198 0.84564 0.83745 0.84561 0.86794 0.92891 0.90757 0.89040 0.87429 0.89323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.14 9.47 71.98 0.68 -3.45 16 2 C 0.12 3.25 3.56 30.60 0.11 3.36 16 3 H 0.10 2.54 7.94 -2.39 -0.02 2.52 16 4 O -0.57 -17.45 11.29 -148.98 -1.68 -19.13 16 5 C -0.12 -4.18 4.80 29.85 0.14 -4.03 16 6 C -0.07 -2.73 4.94 -19.87 -0.10 -2.83 16 7 C -0.13 -4.24 9.48 22.27 0.21 -4.03 16 8 C -0.14 -4.10 10.05 22.27 0.22 -3.87 16 9 C -0.14 -4.44 10.05 22.27 0.22 -4.21 16 10 C -0.15 -5.85 8.45 22.27 0.19 -5.66 16 11 C -0.03 -1.41 5.11 -19.87 -0.10 -1.51 16 12 C 0.02 0.99 0.16 -53.67 -0.01 0.98 16 13 C -0.47 -25.20 8.34 25.60 0.21 -24.98 16 14 H 0.05 2.96 6.75 -2.91 -0.02 2.94 16 15 C 0.02 1.35 5.47 84.66 0.46 1.81 16 16 N -0.95 -58.43 13.95 21.45 0.30 -58.13 16 17 Si 0.92 44.47 24.81 68.60 1.70 46.18 16 18 H -0.27 -12.83 6.94 99.48 0.69 -12.14 16 19 H -0.31 -15.64 7.11 99.48 0.71 -14.93 16 20 H -0.22 -9.55 3.77 99.48 0.38 -9.18 16 21 C -0.21 -8.39 6.72 30.62 0.21 -8.18 16 22 C -0.16 -5.84 7.90 30.62 0.24 -5.60 16 23 H 0.05 1.34 8.14 -2.38 -0.02 1.32 16 24 H 0.07 1.46 8.14 -2.39 -0.02 1.45 16 25 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 26 H 0.38 10.60 6.79 -74.06 -0.50 10.10 16 27 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 28 H 0.08 3.29 4.35 -2.39 -0.01 3.28 16 29 H 0.14 3.54 8.06 -2.91 -0.02 3.52 16 30 H 0.14 3.24 8.06 -2.91 -0.02 3.22 16 31 H 0.14 3.58 8.06 -2.91 -0.02 3.55 16 32 H 0.11 4.40 5.15 -2.91 -0.02 4.38 16 33 H 0.26 15.45 8.32 -92.70 -0.77 14.68 16 34 H 0.07 3.19 6.27 -2.39 -0.01 3.17 16 35 H 0.09 3.38 7.13 -2.39 -0.02 3.37 16 36 H 0.11 3.67 6.18 -2.39 -0.01 3.65 16 37 H 0.09 3.21 8.14 -2.39 -0.02 3.19 16 Total: -1.00 -64.55 286.12 3.24 -61.31 By element: Atomic # 1 Polarization: 31.77 SS G_CDS: 0.22 Total: 31.99 kcal Atomic # 6 Polarization: -64.92 SS G_CDS: 2.70 Total: -62.22 kcal Atomic # 7 Polarization: -58.43 SS G_CDS: 0.30 Total: -58.13 kcal Atomic # 8 Polarization: -17.45 SS G_CDS: -1.68 Total: -19.13 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 1.70 Total: 46.18 kcal Total: -64.55 3.24 -61.31 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260439917.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.825 kcal (2) G-P(sol) polarization free energy of solvation -64.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds