Wall clock time and date at job start Mon Mar 30 2020 05:46:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09005 * 109.46808 * 2 1 4 4 O 1.42892 * 109.46981 * 119.99477 * 2 1 3 5 5 C 1.50695 * 109.47236 * 239.99651 * 2 1 3 6 6 C 1.38258 * 119.99911 * 265.56666 * 5 2 1 7 7 C 1.38210 * 119.99692 * 180.02562 * 6 5 2 8 8 C 1.38259 * 120.00534 * 359.97438 * 7 6 5 9 9 C 1.38218 * 119.99751 * 0.02562 * 8 7 6 10 10 C 1.38220 * 119.99815 * 85.58320 * 5 2 1 11 11 C 1.50696 * 120.00357 * 359.97438 * 10 5 2 12 12 H 1.09008 * 109.46925 * 353.66845 * 11 10 5 13 13 C 1.50698 * 109.47188 * 113.67010 * 11 10 5 14 14 H 1.07997 * 120.00254 * 359.97438 * 13 11 10 15 15 C 1.37882 * 119.99583 * 180.02562 * 13 11 10 16 16 N 1.31508 * 120.00540 * 359.97438 * 15 13 11 17 17 Si 1.86800 * 119.99625 * 180.02562 * 15 13 11 18 18 H 1.48506 * 109.47192 * 359.97438 * 17 15 13 19 19 H 1.48503 * 109.47363 * 119.99790 * 17 15 13 20 20 H 1.48502 * 109.47494 * 239.99933 * 17 15 13 21 21 C 1.52995 * 109.47025 * 233.67558 * 11 10 5 22 22 C 1.52996 * 117.50118 * 123.30645 * 21 11 10 23 23 C 1.52993 * 117.50275 * 54.68279 * 21 11 10 24 24 H 1.08998 * 109.46981 * 184.78568 * 1 2 3 25 25 H 1.09003 * 109.46755 * 304.79070 * 1 2 3 26 26 H 1.09000 * 109.46725 * 64.78390 * 1 2 3 27 27 H 0.96704 * 114.00123 * 59.99865 * 4 2 1 28 28 H 1.07996 * 119.99798 * 359.97438 * 6 5 2 29 29 H 1.08005 * 119.99916 * 179.97438 * 7 6 5 30 30 H 1.07998 * 120.00475 * 180.30096 * 8 7 6 31 31 H 1.07994 * 119.99938 * 179.97438 * 9 8 7 32 32 H 0.96997 * 120.00438 * 179.97438 * 16 15 13 33 33 H 1.09007 * 115.54489 * 269.00972 * 21 11 10 34 34 H 1.08997 * 117.50155 * 359.97438 * 22 21 11 35 35 H 1.09001 * 117.49736 * 145.01670 * 22 21 11 36 36 H 1.09007 * 117.49958 * 214.98122 * 23 21 11 37 37 H 1.08997 * 117.49969 * 359.97229 * 23 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6735 1.1668 5 6 2.0324 -0.7105 -1.2304 6 6 2.3501 -2.0547 -1.1711 7 6 2.8113 -2.7062 -2.2994 8 6 2.9545 -2.0138 -3.4875 9 6 2.6369 -0.6699 -3.5468 10 6 2.1759 -0.0181 -2.4180 11 6 1.8294 1.4471 -2.4827 12 1 1.3813 1.7565 -1.5384 13 6 3.0810 2.2488 -2.7314 14 1 4.0323 1.7475 -2.8321 15 6 3.0117 3.6223 -2.8293 16 7 1.8534 4.2329 -2.7062 17 14 4.5630 4.6160 -3.1383 18 1 5.7267 3.6988 -3.2384 19 1 4.4202 5.3754 -4.4065 20 1 4.7758 5.5639 -2.0151 21 6 0.8357 1.6864 -3.6212 22 6 -0.4960 2.3519 -3.2684 23 6 -0.4538 0.8630 -3.6182 24 1 -0.3633 -1.0241 0.0857 25 1 -0.3633 0.5864 0.8440 26 1 -0.3633 0.4378 -0.9298 27 1 1.7210 -1.5951 1.2330 28 1 2.2386 -2.5955 -0.2429 29 1 3.0599 -3.7562 -2.2531 30 1 3.3103 -2.5239 -4.3704 31 1 2.7492 -0.1289 -4.4747 32 1 1.8048 5.1992 -2.7747 33 1 1.2778 1.9258 -4.5884 34 1 -0.6645 2.6189 -2.2251 35 1 -0.9303 3.0294 -4.0035 36 1 -0.8604 0.5611 -4.5834 37 1 -0.5941 0.1505 -2.8054 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260447314.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:19 Heat of formation + Delta-G solvation = -12.967433 kcal Electronic energy + Delta-G solvation = -18428.496652 eV Core-core repulsion = 15749.961723 eV Total energy + Delta-G solvation = -2678.534930 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.47646 -36.69587 -36.19189 -32.82897 -31.75146 -30.70190 -28.87379 -27.08262 -23.57483 -23.32527 -21.53361 -21.19965 -20.21951 -18.95785 -16.91465 -16.53858 -15.43302 -15.07674 -14.61238 -14.51996 -13.94585 -13.58410 -13.33876 -13.04037 -12.70389 -12.38689 -12.13975 -11.61565 -11.51013 -11.29109 -10.99566 -10.89576 -10.72449 -10.57549 -10.41159 -9.98688 -9.85335 -9.66683 -9.59192 -8.80903 -8.75496 -8.32516 -8.14342 -7.75062 -6.02834 -4.09565 1.98969 2.13029 3.28067 3.37010 3.41730 4.35453 4.48704 4.82673 5.02671 5.20013 5.27088 5.40196 5.53981 5.65164 5.66967 5.78090 5.90821 6.01089 6.12270 6.15885 6.22140 6.35198 6.38368 6.50810 6.58926 6.65263 6.80898 6.89776 7.03172 7.07108 7.14245 7.20791 7.30158 7.48303 7.71428 7.80379 7.93913 7.96740 8.32711 8.93366 9.55073 11.02939 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.018831 B = 0.008882 C = 0.008568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1486.553141 B = 3151.777818 C = 3267.176761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.141 3.859 3 H 0.122 0.878 4 O -0.561 6.561 5 C -0.128 4.128 6 C -0.120 4.120 7 C -0.146 4.146 8 C -0.128 4.128 9 C -0.106 4.106 10 C -0.016 4.016 11 C 0.099 3.901 12 H 0.043 0.957 13 C -0.515 4.515 14 H 0.058 0.942 15 C 0.069 3.931 16 N -0.874 5.874 17 Si 0.887 3.113 18 H -0.273 1.273 19 H -0.285 1.285 20 H -0.284 1.284 21 C -0.077 4.077 22 C -0.145 4.145 23 C -0.226 4.226 24 H 0.051 0.949 25 H 0.060 0.940 26 H 0.076 0.924 27 H 0.364 0.636 28 H 0.108 0.892 29 H 0.109 0.891 30 H 0.110 0.890 31 H 0.120 0.880 32 H 0.259 0.741 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.986 -9.408 1.204 9.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.083 3.917 3 H 0.139 0.861 4 O -0.367 6.367 5 C -0.128 4.128 6 C -0.138 4.138 7 C -0.164 4.164 8 C -0.146 4.146 9 C -0.124 4.124 10 C -0.016 4.016 11 C 0.080 3.920 12 H 0.061 0.939 13 C -0.553 4.553 14 H 0.076 0.924 15 C -0.135 4.135 16 N -0.510 5.510 17 Si 0.715 3.285 18 H -0.198 1.198 19 H -0.211 1.211 20 H -0.210 1.210 21 C -0.096 4.096 22 C -0.182 4.182 23 C -0.263 4.263 24 H 0.070 0.930 25 H 0.079 0.921 26 H 0.095 0.905 27 H 0.211 0.789 28 H 0.126 0.874 29 H 0.127 0.873 30 H 0.128 0.872 31 H 0.138 0.862 32 H 0.069 0.931 33 H 0.102 0.898 34 H 0.101 0.899 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -2.803 -8.633 1.316 9.172 hybrid contribution 0.554 0.112 -0.500 0.754 sum -2.249 -8.522 0.816 8.851 Atomic orbital electron populations 1.22524 0.96065 1.01688 1.03351 1.20920 0.92617 0.96860 0.81304 0.86084 1.86635 1.77465 1.28359 1.44211 1.20369 1.02240 0.94072 0.96127 1.20647 1.01231 0.94160 0.97733 1.20801 1.03130 0.99051 0.93460 1.21065 1.01192 0.95016 0.97338 1.21029 0.98795 0.93578 0.99015 1.20309 0.92646 0.97437 0.91228 1.17642 0.94517 0.85355 0.94440 0.93870 1.21025 0.92789 0.91000 1.50469 0.92400 1.24938 0.95801 0.97752 0.94970 1.70014 1.23312 1.08943 1.48779 0.86608 0.83874 0.80237 0.77760 1.19771 1.21109 1.21038 1.22218 0.87735 0.99194 1.00415 1.22479 1.02775 0.92018 1.00923 1.23111 1.07069 0.95048 1.01067 0.92985 0.92069 0.90508 0.78948 0.87376 0.87332 0.87226 0.86174 0.93123 0.89778 0.89889 0.91027 0.91040 0.90306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.80 9.32 37.16 0.35 -2.46 16 2 C 0.14 2.53 3.12 -27.88 -0.09 2.45 16 3 H 0.12 2.54 6.48 -51.93 -0.34 2.20 16 4 O -0.56 -9.30 13.00 -35.23 -0.46 -9.76 16 5 C -0.13 -2.39 5.06 -104.62 -0.53 -2.92 16 6 C -0.12 -1.96 9.31 -39.58 -0.37 -2.33 16 7 C -0.15 -2.31 10.05 -39.58 -0.40 -2.70 16 8 C -0.13 -2.14 10.05 -39.58 -0.40 -2.54 16 9 C -0.11 -2.06 8.99 -39.58 -0.36 -2.42 16 10 C -0.02 -0.33 4.13 -104.62 -0.43 -0.77 16 11 C 0.10 2.28 1.77 -92.93 -0.16 2.12 16 12 H 0.04 1.06 4.95 -51.92 -0.26 0.81 16 13 C -0.51 -13.48 8.29 -34.44 -0.29 -13.77 16 14 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 15 C 0.07 1.82 5.30 -17.82 -0.09 1.72 16 16 N -0.87 -23.49 11.80 55.43 0.65 -22.84 16 17 Si 0.89 20.86 29.54 -169.99 -5.02 15.84 16 18 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 19 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 20 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 21 C -0.08 -1.70 3.56 -90.63 -0.32 -2.02 16 22 C -0.14 -3.02 9.50 -26.74 -0.25 -3.27 16 23 C -0.23 -4.29 9.67 -26.74 -0.26 -4.55 16 24 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 26 H 0.08 1.30 5.81 -51.93 -0.30 1.00 16 27 H 0.36 4.49 7.32 45.56 0.33 4.83 16 28 H 0.11 1.45 6.41 -52.49 -0.34 1.11 16 29 H 0.11 1.40 8.06 -52.48 -0.42 0.98 16 30 H 0.11 1.55 8.06 -52.49 -0.42 1.12 16 31 H 0.12 2.35 7.89 -52.49 -0.41 1.94 16 32 H 0.26 6.74 8.31 -40.82 -0.34 6.40 16 33 H 0.08 1.99 8.07 -51.93 -0.42 1.58 16 34 H 0.08 1.79 8.03 -51.93 -0.42 1.37 16 35 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 36 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 37 H 0.08 1.46 6.21 -51.93 -0.32 1.14 16 LS Contribution 299.68 15.07 4.52 4.52 Total: -1.00 -27.61 299.68 -8.46 -36.07 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: -4.55 Total: 9.63 kcal Atomic # 6 Polarization: -29.86 SS G_CDS: -3.60 Total: -33.46 kcal Atomic # 7 Polarization: -23.49 SS G_CDS: 0.65 Total: -22.84 kcal Atomic # 8 Polarization: -9.30 SS G_CDS: -0.46 Total: -9.76 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -27.61 -8.46 -36.07 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260447314.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.100 kcal (2) G-P(sol) polarization free energy of solvation -27.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds