Wall clock time and date at job start Mon Mar 30 2020 05:46:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.46902 * 2 1 4 4 O 1.42900 * 109.46917 * 119.99651 * 2 1 3 5 5 C 1.50703 * 109.47285 * 239.99874 * 2 1 3 6 6 C 1.38253 * 119.99990 * 279.99930 * 5 2 1 7 7 C 1.38210 * 119.99785 * 180.02562 * 6 5 2 8 8 C 1.38261 * 120.00183 * 359.97438 * 7 6 5 9 9 C 1.38215 * 119.99697 * 359.97438 * 8 7 6 10 10 C 1.50700 * 119.99558 * 179.97438 * 9 8 7 11 11 H 1.09000 * 109.46897 * 179.97438 * 10 9 8 12 12 C 1.50697 * 109.47346 * 59.99722 * 10 9 8 13 13 H 1.08004 * 120.00383 * 265.22321 * 12 10 9 14 14 C 1.37884 * 119.99989 * 85.22458 * 12 10 9 15 15 N 1.31509 * 119.99839 * 5.08949 * 14 12 10 16 16 Si 1.86793 * 119.99884 * 185.09286 * 14 12 10 17 17 H 1.48498 * 109.47720 * 0.02562 * 16 14 12 18 18 H 1.48510 * 109.47197 * 119.99867 * 16 14 12 19 19 H 1.48505 * 109.47342 * 239.99467 * 16 14 12 20 20 C 1.53001 * 109.47253 * 299.99522 * 10 9 8 21 21 C 1.52997 * 117.49879 * 254.13518 * 20 10 9 22 22 C 1.52994 * 117.50166 * 185.47144 * 20 10 9 23 23 C 1.38209 * 119.99555 * 99.73004 * 5 2 1 24 24 H 1.08996 * 109.47605 * 300.00147 * 1 2 3 25 25 H 1.09007 * 109.46693 * 60.00454 * 1 2 3 26 26 H 1.09001 * 109.46902 * 180.02562 * 1 2 3 27 27 H 0.96703 * 114.00116 * 60.00441 * 4 2 1 28 28 H 1.08000 * 120.00039 * 359.97438 * 6 5 2 29 29 H 1.07999 * 119.99978 * 179.97438 * 7 6 5 30 30 H 1.08002 * 120.00115 * 179.97438 * 8 7 6 31 31 H 0.97001 * 120.00389 * 180.02562 * 15 14 12 32 32 H 1.09005 * 115.54568 * 39.80206 * 20 10 9 33 33 H 1.08994 * 117.49991 * 359.97438 * 21 20 10 34 34 H 1.09004 * 117.49870 * 145.02170 * 21 20 10 35 35 H 1.09002 * 117.50327 * 214.98278 * 22 20 10 36 36 H 1.09009 * 117.49678 * 359.97438 * 22 20 10 37 37 H 1.07999 * 120.00465 * 359.97438 * 23 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.0324 -0.7104 -1.2305 6 6 2.0668 -2.0921 -1.2653 7 6 2.5281 -2.7436 -2.3936 8 6 2.9545 -2.0136 -3.4876 9 6 2.9191 -0.6324 -3.4531 10 6 3.3845 0.1632 -4.6454 11 1 3.2826 1.2277 -4.4340 12 6 2.5453 -0.1927 -5.8454 13 1 2.8858 -0.9488 -6.5375 14 6 1.3428 0.4469 -6.0600 15 7 0.9750 1.4361 -5.2753 16 14 0.2363 -0.0916 -7.4652 17 1 0.8737 -1.2177 -8.1938 18 1 -1.0740 -0.5324 -6.9226 19 1 0.0288 1.0467 -8.3962 20 6 4.8514 -0.1617 -4.9343 21 6 5.8951 0.8934 -4.5625 22 6 5.5500 0.6422 -6.0326 23 6 2.4535 0.0192 -2.3261 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 0.0005 27 1 1.7210 -1.5952 1.2330 28 1 1.7341 -2.6623 -0.4106 29 1 2.5554 -3.8229 -2.4207 30 1 3.3154 -2.5227 -4.3691 31 1 0.1289 1.8858 -5.4260 32 1 5.1320 -1.2090 -4.8213 33 1 5.5368 1.8192 -4.1126 34 1 6.8626 0.5403 -4.2054 35 1 6.2905 0.1241 -6.6420 36 1 4.9644 1.4025 -6.5497 37 1 2.4221 1.0985 -2.3007 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260482351.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:25 Heat of formation + Delta-G solvation = -20.439749 kcal Electronic energy + Delta-G solvation = -17803.384738 eV Core-core repulsion = 15124.525785 eV Total energy + Delta-G solvation = -2678.858954 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.11308 -37.21968 -36.01650 -32.98882 -31.56937 -30.73540 -28.78889 -27.01516 -23.79210 -23.26670 -21.54592 -21.36915 -20.43115 -18.83660 -16.93908 -16.27244 -15.36226 -15.21521 -14.84308 -14.60882 -14.02508 -13.67794 -13.14471 -13.05319 -12.81855 -12.40739 -11.88199 -11.68907 -11.54360 -11.30774 -11.10072 -11.01320 -10.76488 -10.61069 -10.54657 -10.21887 -9.95489 -9.81305 -9.39849 -9.25077 -8.73294 -8.48634 -7.95760 -7.60092 -6.09150 -4.11385 2.18380 2.32988 3.25662 3.34311 3.37717 4.35744 4.53248 4.76797 4.79978 5.10513 5.25401 5.35813 5.46679 5.60567 5.70156 5.73166 5.87016 5.90319 5.92601 6.11806 6.26763 6.30147 6.32597 6.35037 6.46775 6.61496 6.76024 6.78465 6.94846 6.98825 7.11325 7.24981 7.41001 7.54115 7.80094 7.80661 7.89918 7.98705 8.31859 8.94012 9.51654 10.98995 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.017673 B = 0.008312 C = 0.006747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.968900 B = 3367.888610 C = 4148.811061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.147 3.853 3 H 0.102 0.898 4 O -0.563 6.563 5 C -0.126 4.126 6 C -0.147 4.147 7 C -0.128 4.128 8 C -0.115 4.115 9 C -0.010 4.010 10 C 0.094 3.906 11 H 0.061 0.939 12 C -0.500 4.500 13 H 0.059 0.941 14 C 0.067 3.933 15 N -0.885 5.885 16 Si 0.888 3.112 17 H -0.272 1.272 18 H -0.284 1.284 19 H -0.284 1.284 20 C -0.119 4.119 21 C -0.200 4.200 22 C -0.172 4.172 23 C -0.104 4.104 24 H 0.059 0.941 25 H 0.071 0.929 26 H 0.056 0.944 27 H 0.370 0.630 28 H 0.102 0.898 29 H 0.107 0.893 30 H 0.114 0.886 31 H 0.261 0.739 32 H 0.084 0.916 33 H 0.086 0.914 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.095 0.905 37 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.059 -3.832 6.661 7.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.088 3.912 3 H 0.120 0.880 4 O -0.369 6.369 5 C -0.127 4.127 6 C -0.165 4.165 7 C -0.147 4.147 8 C -0.133 4.133 9 C -0.010 4.010 10 C 0.075 3.925 11 H 0.079 0.921 12 C -0.538 4.538 13 H 0.077 0.923 14 C -0.136 4.136 15 N -0.522 5.522 16 Si 0.716 3.284 17 H -0.197 1.197 18 H -0.210 1.210 19 H -0.210 1.210 20 C -0.137 4.137 21 C -0.237 4.237 22 C -0.209 4.209 23 C -0.122 4.122 24 H 0.078 0.922 25 H 0.090 0.910 26 H 0.075 0.925 27 H 0.217 0.783 28 H 0.120 0.880 29 H 0.125 0.875 30 H 0.132 0.868 31 H 0.070 0.930 32 H 0.102 0.898 33 H 0.105 0.895 34 H 0.095 0.905 35 H 0.095 0.905 36 H 0.113 0.887 37 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 2.177 -3.108 6.792 7.780 hybrid contribution -1.150 -0.865 -1.008 1.757 sum 1.027 -3.972 5.784 7.092 Atomic orbital electron populations 1.22459 0.96013 1.02421 1.02603 1.20750 0.92655 0.95789 0.81982 0.88002 1.86561 1.77599 1.28832 1.43919 1.20317 1.01724 0.94219 0.96400 1.20423 1.04400 0.93532 0.98127 1.20913 1.00882 0.98675 0.94191 1.20959 1.00630 0.94371 0.97310 1.20625 0.92672 0.93708 0.94041 1.17649 0.87597 0.96435 0.90793 0.92119 1.20951 1.03745 1.21696 1.07400 0.92325 1.24964 0.97918 0.94513 0.96207 1.69925 1.22161 1.21593 1.38515 0.86597 0.80804 0.78711 0.82312 1.19654 1.21042 1.21036 1.22453 0.94888 0.94884 1.01466 1.22985 0.99812 1.01849 0.99045 1.22732 1.02878 1.04397 0.90905 1.20861 0.99514 0.99409 0.92428 0.92223 0.90971 0.92525 0.78307 0.88025 0.87526 0.86837 0.92951 0.89756 0.89519 0.90492 0.90545 0.88690 0.86759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.49 9.51 37.16 0.35 -2.14 16 2 C 0.15 2.30 3.83 -27.88 -0.11 2.19 16 3 H 0.10 1.60 8.01 -51.93 -0.42 1.19 16 4 O -0.56 -8.35 13.19 -35.23 -0.46 -8.82 16 5 C -0.13 -2.32 4.97 -104.63 -0.52 -2.84 16 6 C -0.15 -2.52 9.32 -39.59 -0.37 -2.89 16 7 C -0.13 -2.31 10.05 -39.58 -0.40 -2.71 16 8 C -0.11 -2.35 8.67 -39.58 -0.34 -2.70 16 9 C -0.01 -0.22 4.77 -104.62 -0.50 -0.72 16 10 C 0.09 2.21 2.06 -92.92 -0.19 2.02 16 11 H 0.06 1.59 7.07 -51.93 -0.37 1.22 16 12 C -0.50 -12.97 7.72 -34.44 -0.27 -13.24 16 13 H 0.06 1.53 7.81 -52.48 -0.41 1.12 16 14 C 0.07 1.78 5.45 -17.82 -0.10 1.68 16 15 N -0.88 -24.44 12.92 55.43 0.72 -23.72 16 16 Si 0.89 20.91 29.54 -169.99 -5.02 15.88 16 17 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 18 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 19 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 20 C -0.12 -2.42 4.92 -90.62 -0.45 -2.87 16 21 C -0.20 -3.61 10.18 -26.69 -0.27 -3.89 16 22 C -0.17 -3.24 10.02 -26.70 -0.27 -3.51 16 23 C -0.10 -2.20 9.29 -39.58 -0.37 -2.57 16 24 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 25 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 26 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 27 H 0.37 4.23 7.50 45.56 0.34 4.58 16 28 H 0.10 1.41 6.79 -52.49 -0.36 1.05 16 29 H 0.11 1.62 8.06 -52.49 -0.42 1.19 16 30 H 0.11 2.27 7.80 -52.49 -0.41 1.86 16 31 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 32 H 0.08 1.66 7.42 -51.93 -0.39 1.28 16 33 H 0.09 1.59 8.08 -51.93 -0.42 1.17 16 34 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 35 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 36 H 0.09 1.92 8.14 -51.92 -0.42 1.50 16 37 H 0.11 2.46 7.93 -52.49 -0.42 2.05 16 LS Contribution 311.37 15.07 4.69 4.69 Total: -1.00 -28.10 311.37 -8.80 -36.90 By element: Atomic # 1 Polarization: 14.17 SS G_CDS: -4.93 Total: 9.24 kcal Atomic # 6 Polarization: -30.38 SS G_CDS: -3.79 Total: -34.17 kcal Atomic # 7 Polarization: -24.44 SS G_CDS: 0.72 Total: -23.72 kcal Atomic # 8 Polarization: -8.35 SS G_CDS: -0.46 Total: -8.82 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -28.10 -8.80 -36.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260482351.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.458 kcal (2) G-P(sol) polarization free energy of solvation -28.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds