Wall clock time and date at job start Mon Mar 30 2020 05:46:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.46902 * 2 1 4 4 O 1.42900 * 109.46917 * 119.99651 * 2 1 3 5 5 C 1.50703 * 109.47285 * 239.99874 * 2 1 3 6 6 C 1.38253 * 119.99990 * 279.99930 * 5 2 1 7 7 C 1.38210 * 119.99785 * 180.02562 * 6 5 2 8 8 C 1.38261 * 120.00183 * 359.97438 * 7 6 5 9 9 C 1.38215 * 119.99697 * 359.97438 * 8 7 6 10 10 C 1.50700 * 119.99558 * 179.97438 * 9 8 7 11 11 H 1.09000 * 109.46897 * 179.97438 * 10 9 8 12 12 C 1.50697 * 109.47346 * 59.99722 * 10 9 8 13 13 H 1.08004 * 120.00383 * 265.22321 * 12 10 9 14 14 C 1.37884 * 119.99989 * 85.22458 * 12 10 9 15 15 N 1.31509 * 119.99839 * 5.08949 * 14 12 10 16 16 Si 1.86793 * 119.99884 * 185.09286 * 14 12 10 17 17 H 1.48498 * 109.47720 * 0.02562 * 16 14 12 18 18 H 1.48510 * 109.47197 * 119.99867 * 16 14 12 19 19 H 1.48505 * 109.47342 * 239.99467 * 16 14 12 20 20 C 1.53001 * 109.47253 * 299.99522 * 10 9 8 21 21 C 1.52997 * 117.49879 * 254.13518 * 20 10 9 22 22 C 1.52994 * 117.50166 * 185.47144 * 20 10 9 23 23 C 1.38209 * 119.99555 * 99.73004 * 5 2 1 24 24 H 1.08996 * 109.47605 * 300.00147 * 1 2 3 25 25 H 1.09007 * 109.46693 * 60.00454 * 1 2 3 26 26 H 1.09001 * 109.46902 * 180.02562 * 1 2 3 27 27 H 0.96703 * 114.00116 * 60.00441 * 4 2 1 28 28 H 1.08000 * 120.00039 * 359.97438 * 6 5 2 29 29 H 1.07999 * 119.99978 * 179.97438 * 7 6 5 30 30 H 1.08002 * 120.00115 * 179.97438 * 8 7 6 31 31 H 0.97001 * 120.00389 * 180.02562 * 15 14 12 32 32 H 1.09005 * 115.54568 * 39.80206 * 20 10 9 33 33 H 1.08994 * 117.49991 * 359.97438 * 21 20 10 34 34 H 1.09004 * 117.49870 * 145.02170 * 21 20 10 35 35 H 1.09002 * 117.50327 * 214.98278 * 22 20 10 36 36 H 1.09009 * 117.49678 * 359.97438 * 22 20 10 37 37 H 1.07999 * 120.00465 * 359.97438 * 23 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.0324 -0.7104 -1.2305 6 6 2.0668 -2.0921 -1.2653 7 6 2.5281 -2.7436 -2.3936 8 6 2.9545 -2.0136 -3.4876 9 6 2.9191 -0.6324 -3.4531 10 6 3.3845 0.1632 -4.6454 11 1 3.2826 1.2277 -4.4340 12 6 2.5453 -0.1927 -5.8454 13 1 2.8858 -0.9488 -6.5375 14 6 1.3428 0.4469 -6.0600 15 7 0.9750 1.4361 -5.2753 16 14 0.2363 -0.0916 -7.4652 17 1 0.8737 -1.2177 -8.1938 18 1 -1.0740 -0.5324 -6.9226 19 1 0.0288 1.0467 -8.3962 20 6 4.8514 -0.1617 -4.9343 21 6 5.8951 0.8934 -4.5625 22 6 5.5500 0.6422 -6.0326 23 6 2.4535 0.0192 -2.3261 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 0.0005 27 1 1.7210 -1.5952 1.2330 28 1 1.7341 -2.6623 -0.4106 29 1 2.5554 -3.8229 -2.4207 30 1 3.3154 -2.5227 -4.3691 31 1 0.1289 1.8858 -5.4260 32 1 5.1320 -1.2090 -4.8213 33 1 5.5368 1.8192 -4.1126 34 1 6.8626 0.5403 -4.2054 35 1 6.2905 0.1241 -6.6420 36 1 4.9644 1.4025 -6.5497 37 1 2.4221 1.0985 -2.3007 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260482351.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:25 Heat of formation + Delta-G solvation = -35.641882 kcal Electronic energy + Delta-G solvation = -17804.043952 eV Core-core repulsion = 15124.525785 eV Total energy + Delta-G solvation = -2679.518168 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.57601 -38.68092 -37.42501 -34.87108 -32.95435 -32.35901 -30.14592 -28.75943 -25.59206 -24.66427 -23.05636 -22.85817 -21.91558 -20.46153 -18.49652 -18.01233 -16.74149 -16.64902 -16.58457 -16.19498 -15.40349 -15.19249 -14.76721 -14.46439 -14.13583 -14.06775 -13.44755 -13.24831 -12.97574 -12.90598 -12.84415 -12.52331 -12.38088 -12.26204 -11.99487 -11.71834 -11.65212 -11.29065 -11.02265 -10.91845 -10.49626 -10.38196 -9.46399 -9.17372 -8.10817 -6.18704 0.67292 0.81850 1.37071 1.40159 1.49927 2.41265 3.06942 3.17684 3.26277 3.58503 3.78448 4.05402 4.14273 4.24537 4.30291 4.34225 4.38415 4.40092 4.65295 4.76950 4.82425 4.86525 4.90087 4.90817 5.15040 5.16817 5.19767 5.24368 5.42231 5.46168 5.48511 5.69776 5.76428 5.78691 5.94822 6.14728 6.39103 6.43439 6.81345 6.92558 7.46180 8.96133 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.017673 B = 0.008312 C = 0.006747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.968900 B = 3367.888610 C = 4148.811061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.152 3.848 3 H 0.093 0.907 4 O -0.566 6.566 5 C -0.125 4.125 6 C -0.141 4.141 7 C -0.123 4.123 8 C -0.133 4.133 9 C -0.035 4.035 10 C 0.098 3.902 11 H 0.020 0.980 12 C -0.503 4.503 13 H 0.053 0.947 14 C 0.018 3.982 15 N -0.915 5.915 16 Si 0.943 3.057 17 H -0.265 1.265 18 H -0.285 1.285 19 H -0.282 1.282 20 C -0.139 4.139 21 C -0.182 4.182 22 C -0.169 4.169 23 C -0.130 4.130 24 H 0.078 0.922 25 H 0.050 0.950 26 H 0.070 0.930 27 H 0.387 0.613 28 H 0.146 0.854 29 H 0.142 0.858 30 H 0.112 0.888 31 H 0.258 0.742 32 H 0.094 0.906 33 H 0.076 0.924 34 H 0.107 0.893 35 H 0.104 0.896 36 H 0.072 0.928 37 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.173 -5.982 7.790 10.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.093 3.907 3 H 0.110 0.890 4 O -0.374 6.374 5 C -0.125 4.125 6 C -0.159 4.159 7 C -0.141 4.141 8 C -0.151 4.151 9 C -0.035 4.035 10 C 0.079 3.921 11 H 0.038 0.962 12 C -0.541 4.541 13 H 0.072 0.928 14 C -0.181 4.181 15 N -0.555 5.555 16 Si 0.769 3.231 17 H -0.189 1.189 18 H -0.212 1.212 19 H -0.208 1.208 20 C -0.157 4.157 21 C -0.219 4.219 22 C -0.206 4.206 23 C -0.148 4.148 24 H 0.097 0.903 25 H 0.070 0.930 26 H 0.089 0.911 27 H 0.236 0.764 28 H 0.163 0.837 29 H 0.160 0.840 30 H 0.130 0.870 31 H 0.067 0.933 32 H 0.112 0.888 33 H 0.094 0.906 34 H 0.126 0.874 35 H 0.123 0.877 36 H 0.091 0.909 37 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 2.301 -5.274 7.919 9.789 hybrid contribution -1.141 -0.222 -1.276 1.726 sum 1.160 -5.497 6.643 8.700 Atomic orbital electron populations 1.22385 0.94523 1.03338 1.02540 1.20625 0.93621 0.95221 0.81206 0.88953 1.86552 1.77746 1.30247 1.42885 1.20634 1.00478 0.95140 0.96287 1.20912 1.02720 0.93086 0.99204 1.21314 0.99108 1.00425 0.93227 1.21042 1.01829 0.93654 0.98547 1.20525 0.94278 0.94671 0.94053 1.17442 0.89487 0.94264 0.90886 0.96187 1.21213 1.03968 1.20913 1.08055 0.92844 1.25643 0.99305 0.94785 0.98403 1.70057 1.22426 1.22799 1.40170 0.85729 0.79012 0.78435 0.79885 1.18903 1.21158 1.20841 1.22371 0.93736 0.95964 1.03616 1.23013 1.00131 1.00460 0.98317 1.22752 1.02877 1.03588 0.91383 1.20832 1.01433 0.98677 0.93882 0.90263 0.93046 0.91108 0.76350 0.83677 0.83986 0.86990 0.93252 0.88789 0.90585 0.87441 0.87747 0.90947 0.88998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.46 9.51 71.98 0.68 -3.78 16 2 C 0.15 4.55 3.83 29.85 0.11 4.67 16 3 H 0.09 2.92 8.01 -2.39 -0.02 2.90 16 4 O -0.57 -15.07 13.19 -148.98 -1.97 -17.03 16 5 C -0.13 -4.46 4.97 -19.87 -0.10 -4.56 16 6 C -0.14 -4.41 9.32 22.27 0.21 -4.20 16 7 C -0.12 -4.08 10.05 22.27 0.22 -3.86 16 8 C -0.13 -5.37 8.67 22.27 0.19 -5.18 16 9 C -0.03 -1.59 4.77 -19.87 -0.09 -1.68 16 10 C 0.10 4.81 2.06 -12.29 -0.03 4.78 16 11 H 0.02 1.12 7.07 -2.39 -0.02 1.10 16 12 C -0.50 -26.91 7.72 25.60 0.20 -26.71 16 13 H 0.05 2.84 7.81 -2.91 -0.02 2.81 16 14 C 0.02 0.97 5.45 84.66 0.46 1.44 16 15 N -0.92 -52.78 12.92 21.45 0.28 -52.51 16 16 Si 0.94 43.64 29.54 68.60 2.03 45.67 16 17 H -0.26 -11.82 7.11 99.48 0.71 -11.11 16 18 H -0.29 -13.16 7.11 99.48 0.71 -12.46 16 19 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 20 C -0.14 -5.73 4.92 -10.80 -0.05 -5.79 16 21 C -0.18 -6.53 10.18 30.62 0.31 -6.22 16 22 C -0.17 -6.35 10.02 30.62 0.31 -6.04 16 23 C -0.13 -5.69 9.29 22.27 0.21 -5.48 16 24 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 25 H 0.05 1.56 8.14 -2.38 -0.02 1.54 16 26 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 27 H 0.39 7.17 7.50 -74.05 -0.56 6.62 16 28 H 0.15 3.23 6.79 -2.91 -0.02 3.21 16 29 H 0.14 3.68 8.06 -2.91 -0.02 3.66 16 30 H 0.11 4.44 7.80 -2.91 -0.02 4.42 16 31 H 0.26 14.30 8.31 -92.71 -0.77 13.53 16 32 H 0.09 3.67 7.42 -2.38 -0.02 3.65 16 33 H 0.08 2.86 8.08 -2.39 -0.02 2.84 16 34 H 0.11 3.19 8.14 -2.38 -0.02 3.17 16 35 H 0.10 3.30 8.14 -2.39 -0.02 3.28 16 36 H 0.07 3.03 8.14 -2.38 -0.02 3.01 16 37 H 0.09 4.29 7.93 -2.91 -0.02 4.27 16 Total: -1.00 -62.29 311.37 3.47 -58.83 By element: Atomic # 1 Polarization: 27.16 SS G_CDS: 0.49 Total: 27.65 kcal Atomic # 6 Polarization: -65.24 SS G_CDS: 2.64 Total: -62.61 kcal Atomic # 7 Polarization: -52.78 SS G_CDS: 0.28 Total: -52.51 kcal Atomic # 8 Polarization: -15.07 SS G_CDS: -1.97 Total: -17.03 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Total: -62.29 3.47 -58.83 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260482351.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.183 kcal (2) G-P(sol) polarization free energy of solvation -62.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds