Wall clock time and date at job start Mon Mar 30 2020 05:46:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.47277 * 2 1 4 4 O 1.42894 * 109.47225 * 120.00494 * 2 1 3 5 5 C 1.50707 * 109.46651 * 240.00308 * 2 1 3 6 6 C 1.38255 * 119.99843 * 279.97476 * 5 2 1 7 7 C 1.38215 * 119.99743 * 179.97438 * 6 5 2 8 8 C 1.38256 * 120.00058 * 0.02562 * 7 6 5 9 9 C 1.38208 * 120.00010 * 359.79901 * 8 7 6 10 10 C 1.50698 * 120.00333 * 180.23718 * 9 8 7 11 11 H 1.08998 * 109.47280 * 180.19713 * 10 9 8 12 12 C 1.50709 * 109.46867 * 300.19483 * 10 9 8 13 13 H 1.07994 * 120.00128 * 359.97438 * 12 10 9 14 14 C 1.37882 * 119.99406 * 179.97438 * 12 10 9 15 15 N 1.31512 * 120.00607 * 0.02562 * 14 12 10 16 16 Si 1.86804 * 119.99317 * 179.97438 * 14 12 10 17 17 H 1.48502 * 109.47527 * 0.02562 * 16 14 12 18 18 H 1.48497 * 109.46923 * 120.00201 * 16 14 12 19 19 H 1.48501 * 109.47110 * 239.99899 * 16 14 12 20 20 C 1.53001 * 109.47247 * 60.19178 * 10 9 8 21 21 C 1.52995 * 117.50038 * 128.62059 * 20 10 9 22 22 C 1.52993 * 60.00310 * 252.51629 * 21 20 10 23 23 C 1.38212 * 119.99857 * 100.00467 * 5 2 1 24 24 H 1.08996 * 109.47277 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.46824 * 299.99523 * 1 2 3 26 26 H 1.09003 * 109.47411 * 59.99861 * 1 2 3 27 27 H 0.96710 * 114.00540 * 59.99687 * 4 2 1 28 28 H 1.08005 * 120.00210 * 0.02562 * 6 5 2 29 29 H 1.08001 * 119.99686 * 180.02562 * 7 6 5 30 30 H 1.07998 * 120.00044 * 180.02562 * 8 7 6 31 31 H 0.96993 * 120.00323 * 179.97438 * 15 14 12 32 32 H 1.08996 * 115.55194 * 274.33750 * 20 10 9 33 33 H 1.09009 * 117.49692 * 0.02562 * 21 20 10 34 34 H 1.08992 * 117.49988 * 145.01973 * 21 20 10 35 35 H 1.09003 * 117.50010 * 252.51473 * 22 21 20 36 36 H 1.09000 * 117.51936 * 107.48112 * 22 21 20 37 37 H 1.08002 * 119.99812 * 359.97106 * 23 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 2.0322 -0.7104 -1.2306 6 6 2.0671 -2.0921 -1.2653 7 6 2.5272 -2.7436 -2.3941 8 6 2.9531 -2.0136 -3.4883 9 6 2.9149 -0.6324 -3.4549 10 6 3.3741 0.1632 -4.6495 11 1 3.2745 1.2277 -4.4372 12 6 4.8172 -0.1577 -4.9421 13 1 5.3487 -0.8665 -4.3246 14 6 5.4588 0.4538 -5.9984 15 7 4.8117 1.3173 -6.7501 16 14 7.2478 0.0565 -6.3607 17 1 7.7435 -0.9380 -5.3755 18 1 7.3625 -0.5051 -7.7306 19 1 8.0595 1.2963 -6.2644 20 6 2.5152 -0.1974 -5.8632 21 6 1.8793 0.9534 -6.6457 22 6 1.0096 0.0557 -5.7634 23 6 2.4586 0.0194 -2.3242 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8900 27 1 1.7210 -1.5954 1.2328 28 1 1.7340 -2.6623 -0.4107 29 1 2.5540 -3.8229 -2.4214 30 1 3.3122 -2.5226 -4.3704 31 1 5.2632 1.7477 -7.4928 32 1 2.8424 -1.0702 -6.4281 33 1 2.0733 1.9675 -6.2960 34 1 1.7884 0.8379 -7.7257 35 1 0.3463 -0.6505 -6.2630 36 1 0.6309 0.4788 -4.8330 37 1 2.4314 1.0987 -2.2969 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260482357.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:27 Heat of formation + Delta-G solvation = -17.815825 kcal Electronic energy + Delta-G solvation = -17754.706337 eV Core-core repulsion = 15075.961165 eV Total energy + Delta-G solvation = -2678.745172 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.32135 -37.26880 -35.93530 -32.75750 -31.74761 -30.99375 -28.97522 -27.08289 -23.81387 -23.20257 -21.60883 -21.18501 -20.50085 -18.78889 -16.96435 -16.42102 -15.53332 -15.34762 -14.71400 -14.45172 -14.04513 -13.84430 -13.28243 -13.11515 -12.88339 -12.56055 -12.01834 -11.88233 -11.68244 -11.26858 -11.01577 -10.94720 -10.76015 -10.52686 -10.46702 -10.19325 -9.98502 -9.78008 -9.59636 -8.77490 -8.73263 -8.33194 -8.17184 -7.79395 -6.01507 -4.08523 1.97074 2.09871 3.28034 3.36827 3.41323 4.31689 4.44579 4.62757 4.90528 5.08520 5.18687 5.25829 5.28756 5.49692 5.53743 5.72819 5.87144 5.95378 5.99772 6.08288 6.16081 6.17880 6.30448 6.44130 6.51227 6.61466 6.76463 6.91127 7.05726 7.06966 7.17565 7.23700 7.31947 7.51773 7.67199 7.70897 7.81780 7.96440 8.33881 8.94252 9.55936 11.04222 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.024186 B = 0.006709 C = 0.006004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.410066 B = 4172.245398 C = 4662.699916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.145 3.855 3 H 0.103 0.897 4 O -0.561 6.561 5 C -0.124 4.124 6 C -0.141 4.141 7 C -0.124 4.124 8 C -0.106 4.106 9 C -0.020 4.020 10 C 0.103 3.897 11 H 0.035 0.965 12 C -0.514 4.514 13 H 0.058 0.942 14 C 0.068 3.932 15 N -0.874 5.874 16 Si 0.888 3.112 17 H -0.273 1.273 18 H -0.285 1.285 19 H -0.284 1.284 20 C -0.080 4.080 21 C -0.137 4.137 22 C -0.226 4.226 23 C -0.121 4.121 24 H 0.057 0.943 25 H 0.061 0.939 26 H 0.068 0.932 27 H 0.371 0.629 28 H 0.105 0.895 29 H 0.111 0.889 30 H 0.121 0.879 31 H 0.258 0.742 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.076 0.924 37 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.964 -4.083 7.943 11.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.087 3.913 3 H 0.121 0.879 4 O -0.367 6.367 5 C -0.124 4.124 6 C -0.159 4.159 7 C -0.142 4.142 8 C -0.124 4.124 9 C -0.020 4.020 10 C 0.085 3.915 11 H 0.053 0.947 12 C -0.552 4.552 13 H 0.077 0.923 14 C -0.136 4.136 15 N -0.511 5.511 16 Si 0.716 3.284 17 H -0.198 1.198 18 H -0.211 1.211 19 H -0.211 1.211 20 C -0.099 4.099 21 C -0.174 4.174 22 C -0.263 4.263 23 C -0.140 4.140 24 H 0.076 0.924 25 H 0.080 0.920 26 H 0.087 0.913 27 H 0.218 0.782 28 H 0.123 0.877 29 H 0.129 0.871 30 H 0.139 0.861 31 H 0.068 0.932 32 H 0.100 0.900 33 H 0.104 0.896 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.095 0.905 37 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -7.671 -3.372 7.894 11.512 hybrid contribution 0.748 -0.718 -0.613 1.205 sum -6.923 -4.090 7.281 10.847 Atomic orbital electron populations 1.22467 0.95972 1.02522 1.02532 1.20770 0.92587 0.95933 0.82057 0.87919 1.86588 1.77543 1.28883 1.43651 1.20315 1.01587 0.94277 0.96238 1.20499 1.03832 0.93510 0.98106 1.21012 1.00199 0.99029 0.93974 1.21072 0.99038 0.94210 0.98055 1.20507 0.91765 0.94094 0.95657 1.17544 0.93876 0.94146 0.85922 0.94676 1.21050 0.94721 1.25686 1.13785 0.92347 1.24957 0.97666 0.94922 0.96009 1.70031 1.35928 1.27265 1.17898 0.86599 0.85466 0.78251 0.78096 1.19783 1.21092 1.21064 1.22168 0.89141 0.98683 0.99888 1.22430 1.02519 0.96487 0.95965 1.23048 0.95998 1.05405 1.01840 1.20911 1.00545 0.99282 0.93217 0.92361 0.92015 0.91288 0.78193 0.87693 0.87122 0.86128 0.93169 0.89977 0.89645 0.91181 0.91131 0.90546 0.86841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.99 9.51 37.16 0.35 -1.64 16 2 C 0.15 1.98 3.83 -27.88 -0.11 1.87 16 3 H 0.10 1.41 8.00 -51.93 -0.42 0.99 16 4 O -0.56 -7.60 13.19 -35.23 -0.46 -8.06 16 5 C -0.12 -2.01 4.97 -104.62 -0.52 -2.53 16 6 C -0.14 -2.17 9.32 -39.58 -0.37 -2.54 16 7 C -0.12 -2.05 10.05 -39.58 -0.40 -2.45 16 8 C -0.11 -2.05 8.82 -39.59 -0.35 -2.40 16 9 C -0.02 -0.42 4.39 -104.63 -0.46 -0.88 16 10 C 0.10 2.47 2.10 -92.92 -0.20 2.28 16 11 H 0.04 0.91 7.63 -51.93 -0.40 0.52 16 12 C -0.51 -13.61 8.22 -34.43 -0.28 -13.89 16 13 H 0.06 1.57 7.59 -52.49 -0.40 1.17 16 14 C 0.07 1.81 5.30 -17.82 -0.09 1.71 16 15 N -0.87 -23.82 11.44 55.43 0.63 -23.19 16 16 Si 0.89 20.90 29.54 -169.99 -5.02 15.88 16 17 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 18 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 19 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 20 C -0.08 -1.81 3.87 -90.62 -0.35 -2.16 16 21 C -0.14 -2.96 9.05 -26.74 -0.24 -3.20 16 22 C -0.23 -4.43 9.87 -26.73 -0.26 -4.69 16 23 C -0.12 -2.29 9.29 -39.58 -0.37 -2.66 16 24 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 25 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 26 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 27 H 0.37 3.74 7.50 45.56 0.34 4.08 16 28 H 0.11 1.27 6.79 -52.48 -0.36 0.91 16 29 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 30 H 0.12 2.38 8.05 -52.49 -0.42 1.95 16 31 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 32 H 0.08 1.96 8.11 -51.93 -0.42 1.54 16 33 H 0.09 1.94 8.05 -51.92 -0.42 1.52 16 34 H 0.07 1.47 8.14 -51.93 -0.42 1.04 16 35 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 36 H 0.08 1.47 8.14 -51.93 -0.42 1.04 16 37 H 0.11 2.06 7.93 -52.49 -0.42 1.64 16 LS Contribution 308.95 15.07 4.66 4.66 Total: -1.00 -28.10 308.95 -8.84 -36.94 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: -5.00 Total: 6.96 kcal Atomic # 6 Polarization: -29.54 SS G_CDS: -3.65 Total: -33.18 kcal Atomic # 7 Polarization: -23.82 SS G_CDS: 0.63 Total: -23.19 kcal Atomic # 8 Polarization: -7.60 SS G_CDS: -0.46 Total: -8.06 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -28.10 -8.84 -36.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260482357.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.124 kcal (2) G-P(sol) polarization free energy of solvation -28.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds