Wall clock time and date at job start Mon Mar 30 2020 05:46:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.47277 * 2 1 4 4 O 1.42894 * 109.47225 * 120.00494 * 2 1 3 5 5 C 1.50707 * 109.46651 * 240.00308 * 2 1 3 6 6 C 1.38255 * 119.99843 * 279.97476 * 5 2 1 7 7 C 1.38215 * 119.99743 * 179.97438 * 6 5 2 8 8 C 1.38256 * 120.00058 * 0.02562 * 7 6 5 9 9 C 1.38208 * 120.00010 * 359.79901 * 8 7 6 10 10 C 1.50698 * 120.00333 * 180.23718 * 9 8 7 11 11 H 1.08998 * 109.47280 * 180.19713 * 10 9 8 12 12 C 1.50709 * 109.46867 * 300.19483 * 10 9 8 13 13 H 1.07994 * 120.00128 * 359.97438 * 12 10 9 14 14 C 1.37882 * 119.99406 * 179.97438 * 12 10 9 15 15 N 1.31512 * 120.00607 * 0.02562 * 14 12 10 16 16 Si 1.86804 * 119.99317 * 179.97438 * 14 12 10 17 17 H 1.48502 * 109.47527 * 0.02562 * 16 14 12 18 18 H 1.48497 * 109.46923 * 120.00201 * 16 14 12 19 19 H 1.48501 * 109.47110 * 239.99899 * 16 14 12 20 20 C 1.53001 * 109.47247 * 60.19178 * 10 9 8 21 21 C 1.52995 * 117.50038 * 128.62059 * 20 10 9 22 22 C 1.52993 * 60.00310 * 252.51629 * 21 20 10 23 23 C 1.38212 * 119.99857 * 100.00467 * 5 2 1 24 24 H 1.08996 * 109.47277 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.46824 * 299.99523 * 1 2 3 26 26 H 1.09003 * 109.47411 * 59.99861 * 1 2 3 27 27 H 0.96710 * 114.00540 * 59.99687 * 4 2 1 28 28 H 1.08005 * 120.00210 * 0.02562 * 6 5 2 29 29 H 1.08001 * 119.99686 * 180.02562 * 7 6 5 30 30 H 1.07998 * 120.00044 * 180.02562 * 8 7 6 31 31 H 0.96993 * 120.00323 * 179.97438 * 15 14 12 32 32 H 1.08996 * 115.55194 * 274.33750 * 20 10 9 33 33 H 1.09009 * 117.49692 * 0.02562 * 21 20 10 34 34 H 1.08992 * 117.49988 * 145.01973 * 21 20 10 35 35 H 1.09003 * 117.50010 * 252.51473 * 22 21 20 36 36 H 1.09000 * 117.51936 * 107.48112 * 22 21 20 37 37 H 1.08002 * 119.99812 * 359.97106 * 23 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 2.0322 -0.7104 -1.2306 6 6 2.0671 -2.0921 -1.2653 7 6 2.5272 -2.7436 -2.3941 8 6 2.9531 -2.0136 -3.4883 9 6 2.9149 -0.6324 -3.4549 10 6 3.3741 0.1632 -4.6495 11 1 3.2745 1.2277 -4.4372 12 6 4.8172 -0.1577 -4.9421 13 1 5.3487 -0.8665 -4.3246 14 6 5.4588 0.4538 -5.9984 15 7 4.8117 1.3173 -6.7501 16 14 7.2478 0.0565 -6.3607 17 1 7.7435 -0.9380 -5.3755 18 1 7.3625 -0.5051 -7.7306 19 1 8.0595 1.2963 -6.2644 20 6 2.5152 -0.1974 -5.8632 21 6 1.8793 0.9534 -6.6457 22 6 1.0096 0.0557 -5.7634 23 6 2.4586 0.0194 -2.3242 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8900 27 1 1.7210 -1.5954 1.2328 28 1 1.7340 -2.6623 -0.4107 29 1 2.5540 -3.8229 -2.4214 30 1 3.3122 -2.5226 -4.3704 31 1 5.2632 1.7477 -7.4928 32 1 2.8424 -1.0702 -6.4281 33 1 2.0733 1.9675 -6.2960 34 1 1.7884 0.8379 -7.7257 35 1 0.3463 -0.6505 -6.2630 36 1 0.6309 0.4788 -4.8330 37 1 2.4314 1.0987 -2.2969 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260482357.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:26 Heat of formation + Delta-G solvation = -33.018116 kcal Electronic energy + Delta-G solvation = -17755.365558 eV Core-core repulsion = 15075.961165 eV Total energy + Delta-G solvation = -2679.404393 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.66966 -38.68349 -37.36833 -34.68976 -33.02035 -32.51089 -30.15090 -28.79823 -25.46007 -24.60069 -23.08145 -22.76070 -22.00495 -20.40305 -18.49575 -18.08138 -16.76997 -16.59593 -16.55105 -16.03972 -15.48249 -15.21753 -14.65253 -14.59993 -14.25508 -14.01882 -13.66675 -13.06712 -12.90143 -12.86428 -12.72473 -12.48386 -12.28866 -12.20160 -12.05186 -11.71417 -11.65592 -11.50543 -11.01073 -10.60820 -10.56991 -10.20823 -9.54725 -9.25841 -8.05821 -6.18938 0.59965 0.71201 1.38424 1.41864 1.51882 2.43607 3.02027 3.20772 3.36061 3.60287 3.76376 4.07543 4.19825 4.23785 4.34096 4.37834 4.40690 4.50160 4.64532 4.74236 4.79602 4.89574 4.92352 5.04112 5.15723 5.18962 5.26576 5.33521 5.36927 5.48682 5.58430 5.64975 5.72322 5.80649 5.86709 6.13263 6.30142 6.40858 6.83526 6.88588 7.47463 8.98167 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.024186 B = 0.006709 C = 0.006004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.410066 B = 4172.245398 C = 4662.699916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.148 3.852 3 H 0.095 0.905 4 O -0.570 6.570 5 C -0.118 4.118 6 C -0.133 4.133 7 C -0.118 4.118 8 C -0.126 4.126 9 C -0.046 4.046 10 C 0.109 3.891 11 H 0.000 1.000 12 C -0.529 4.529 13 H 0.046 0.954 14 C 0.023 3.977 15 N -0.895 5.895 16 Si 0.945 3.055 17 H -0.273 1.273 18 H -0.280 1.280 19 H -0.283 1.283 20 C -0.096 4.096 21 C -0.143 4.143 22 C -0.189 4.189 23 C -0.140 4.140 24 H 0.071 0.929 25 H 0.075 0.925 26 H 0.063 0.937 27 H 0.387 0.613 28 H 0.149 0.851 29 H 0.142 0.858 30 H 0.106 0.894 31 H 0.258 0.742 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.075 0.925 35 H 0.095 0.905 36 H 0.082 0.918 37 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.109 -5.665 9.646 14.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.089 3.911 3 H 0.113 0.887 4 O -0.379 6.379 5 C -0.118 4.118 6 C -0.151 4.151 7 C -0.136 4.136 8 C -0.144 4.144 9 C -0.046 4.046 10 C 0.091 3.909 11 H 0.018 0.982 12 C -0.567 4.567 13 H 0.064 0.936 14 C -0.177 4.177 15 N -0.533 5.533 16 Si 0.772 3.228 17 H -0.197 1.197 18 H -0.206 1.206 19 H -0.209 1.209 20 C -0.115 4.115 21 C -0.180 4.180 22 C -0.226 4.226 23 C -0.158 4.158 24 H 0.090 0.910 25 H 0.094 0.906 26 H 0.082 0.918 27 H 0.237 0.763 28 H 0.167 0.833 29 H 0.160 0.840 30 H 0.124 0.876 31 H 0.068 0.932 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.093 0.907 35 H 0.114 0.886 36 H 0.100 0.900 37 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -8.822 -4.967 9.604 13.955 hybrid contribution 1.088 -0.254 -1.054 1.536 sum -7.734 -5.221 8.550 12.656 Atomic orbital electron populations 1.22395 0.93737 1.03599 1.03021 1.20728 0.94157 0.95270 0.80903 0.88720 1.86577 1.77897 1.30313 1.43071 1.20636 1.00063 0.94977 0.96126 1.20985 1.01921 0.93289 0.98872 1.21341 0.98674 1.00556 0.93044 1.21044 1.00576 0.93701 0.99063 1.20291 0.94206 0.94734 0.95415 1.17307 0.93108 0.92521 0.88003 0.98185 1.21303 0.96395 1.25329 1.13632 0.93566 1.25617 1.01126 0.94980 0.96019 1.70136 1.37114 1.27899 1.18162 0.85704 0.81311 0.77918 0.77891 1.19746 1.20556 1.20856 1.21940 0.91415 0.98420 0.99759 1.22350 1.03752 0.95496 0.96421 1.23027 0.94224 1.03987 1.01365 1.20955 1.01685 0.99313 0.93851 0.90984 0.90572 0.91795 0.76293 0.83348 0.83978 0.87570 0.93237 0.91720 0.91465 0.90690 0.88622 0.89963 0.87516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.26 9.51 71.98 0.68 -2.58 16 2 C 0.15 3.67 3.83 29.85 0.11 3.78 16 3 H 0.09 2.49 8.00 -2.39 -0.02 2.47 16 4 O -0.57 -13.49 13.19 -148.98 -1.96 -15.45 16 5 C -0.12 -3.57 4.97 -19.86 -0.10 -3.67 16 6 C -0.13 -3.59 9.32 22.27 0.21 -3.38 16 7 C -0.12 -3.60 10.05 22.27 0.22 -3.37 16 8 C -0.13 -4.87 8.82 22.27 0.20 -4.68 16 9 C -0.05 -1.99 4.39 -19.87 -0.09 -2.08 16 10 C 0.11 5.45 2.10 -12.28 -0.03 5.43 16 11 H 0.00 0.00 7.63 -2.39 -0.02 -0.02 16 12 C -0.53 -29.12 8.22 25.60 0.21 -28.91 16 13 H 0.05 2.59 7.59 -2.91 -0.02 2.56 16 14 C 0.02 1.29 5.30 84.66 0.45 1.73 16 15 N -0.90 -50.39 11.44 21.45 0.25 -50.15 16 16 Si 0.95 43.84 29.54 68.60 2.03 45.87 16 17 H -0.27 -12.51 7.11 99.48 0.71 -11.81 16 18 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 19 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 20 C -0.10 -4.51 3.87 -10.79 -0.04 -4.55 16 21 C -0.14 -6.33 9.05 30.59 0.28 -6.06 16 22 C -0.19 -7.34 9.87 30.59 0.30 -7.04 16 23 C -0.14 -5.31 9.29 22.27 0.21 -5.11 16 24 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 25 H 0.08 1.26 8.14 -2.38 -0.02 1.24 16 26 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 27 H 0.39 6.02 7.50 -74.05 -0.56 5.46 16 28 H 0.15 2.72 6.79 -2.91 -0.02 2.70 16 29 H 0.14 3.38 8.06 -2.91 -0.02 3.36 16 30 H 0.11 4.31 8.05 -2.91 -0.02 4.28 16 31 H 0.26 13.94 8.31 -92.71 -0.77 13.16 16 32 H 0.06 3.21 8.11 -2.39 -0.02 3.19 16 33 H 0.07 3.19 8.05 -2.38 -0.02 3.18 16 34 H 0.07 3.19 8.14 -2.39 -0.02 3.17 16 35 H 0.10 3.24 8.14 -2.39 -0.02 3.22 16 36 H 0.08 3.10 8.14 -2.39 -0.02 3.08 16 37 H 0.11 4.05 7.93 -2.91 -0.02 4.02 16 Total: -1.00 -62.08 308.95 3.42 -58.67 By element: Atomic # 1 Polarization: 21.06 SS G_CDS: 0.49 Total: 21.55 kcal Atomic # 6 Polarization: -63.10 SS G_CDS: 2.62 Total: -60.49 kcal Atomic # 7 Polarization: -50.39 SS G_CDS: 0.25 Total: -50.15 kcal Atomic # 8 Polarization: -13.49 SS G_CDS: -1.96 Total: -15.45 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Total: -62.08 3.42 -58.67 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260482357.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.651 kcal (2) G-P(sol) polarization free energy of solvation -62.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds