Wall clock time and date at job start Mon Mar 30 2020 05:29:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.46809 * 2 1 4 4 C 1.50694 * 109.47334 * 239.99727 * 2 1 3 5 5 H 1.08005 * 120.00228 * 237.39689 * 4 2 1 6 6 C 1.37872 * 120.00293 * 57.39641 * 4 2 1 7 7 N 1.31518 * 120.00164 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 120.00314 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47025 * 90.00295 * 8 6 4 10 10 H 1.48499 * 109.47252 * 210.00103 * 8 6 4 11 11 H 1.48501 * 109.47314 * 330.00394 * 8 6 4 12 12 C 1.50702 * 109.46507 * 119.99755 * 2 1 3 13 13 C 1.38252 * 120.00321 * 6.22434 * 12 2 1 14 14 C 1.38218 * 120.00048 * 179.97438 * 13 12 2 15 15 C 1.38255 * 119.99646 * 359.97438 * 14 13 12 16 16 C 1.38207 * 120.00472 * 359.97438 * 15 14 13 17 17 C 1.38220 * 119.99534 * 186.25249 * 12 2 1 18 18 C 1.50703 * 120.00172 * 359.97438 * 17 12 2 19 19 O 1.42899 * 115.54854 * 313.13460 * 18 17 12 20 20 C 1.52993 * 117.49877 * 167.46655 * 18 17 12 21 21 C 1.53001 * 117.49882 * 98.80223 * 18 17 12 22 22 H 1.08991 * 109.47475 * 303.50683 * 1 2 3 23 23 H 1.09000 * 109.46830 * 63.50351 * 1 2 3 24 24 H 1.09001 * 109.47305 * 183.49445 * 1 2 3 25 25 H 1.09002 * 109.46390 * 190.08046 * 3 2 1 26 26 H 1.08993 * 109.47007 * 310.07798 * 3 2 1 27 27 H 1.08999 * 109.47309 * 70.08111 * 3 2 1 28 28 H 0.96994 * 120.00465 * 179.97438 * 7 6 4 29 29 H 1.08000 * 120.00182 * 0.02562 * 13 12 2 30 30 H 1.07999 * 120.00172 * 180.02562 * 14 13 12 31 31 H 1.08003 * 119.99325 * 179.71951 * 15 14 13 32 32 H 1.08001 * 120.00432 * 180.02562 * 16 15 14 33 33 H 0.96699 * 114.00211 * 306.65216 * 19 18 17 34 34 H 1.08999 * 117.50182 * 359.97438 * 20 18 17 35 35 H 1.08996 * 117.49939 * 145.01790 * 20 18 17 36 36 H 1.08991 * 117.49887 * 214.97946 * 21 18 17 37 37 H 1.09001 * 117.49479 * 359.97438 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6876 -1.5634 -1.1318 6 6 1.6557 -0.2716 -2.4819 7 7 0.8583 0.7673 -2.6021 8 14 2.2790 -1.1519 -4.0071 9 1 1.3325 -2.2354 -4.3748 10 1 2.3839 -0.1845 -5.1289 11 1 3.6161 -1.7355 -3.7302 12 6 2.0322 -0.7104 1.2306 13 6 1.1404 -1.3470 2.0736 14 6 1.6011 -1.9990 3.2020 15 6 2.9538 -2.0149 3.4871 16 6 3.8455 -1.3794 2.6438 17 6 3.3844 -0.7250 1.5166 18 6 4.3565 -0.0310 0.5976 19 8 4.1831 -0.2952 -0.7960 20 6 5.7851 0.1742 1.1053 21 6 4.8319 1.3672 0.9977 22 1 -0.3634 0.5672 0.8568 23 1 -0.3633 0.4585 -0.9197 24 1 -0.3634 -1.0257 0.0626 25 1 3.1150 1.4478 -0.1799 26 1 1.5373 2.0056 -0.7863 27 1 1.8310 1.9018 0.9662 28 1 0.5935 1.0762 -3.4826 29 1 0.0838 -1.3356 1.8502 30 1 0.9045 -2.4966 3.8603 31 1 3.3133 -2.5205 4.3712 32 1 4.9022 -1.3923 2.8663 33 1 4.1691 -1.2360 -1.0193 34 1 6.0218 -0.1923 2.1041 35 1 6.5927 0.1081 0.3763 36 1 5.0127 2.0853 0.1980 37 1 4.4411 1.7852 1.9255 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260484712.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:29:56 Heat of formation + Delta-G solvation = 34.329507 kcal Electronic energy + Delta-G solvation = -19057.716671 eV Core-core repulsion = 16381.232690 eV Total energy + Delta-G solvation = -2676.483980 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.75476 -36.88043 -35.26318 -33.07596 -31.48471 -30.03379 -28.52972 -25.91267 -25.09663 -22.67597 -22.25675 -21.79840 -19.59226 -18.82347 -17.03054 -16.16155 -15.44256 -14.67648 -14.20734 -14.04010 -13.92842 -13.54780 -13.15453 -12.67319 -12.38980 -11.82815 -11.57432 -11.13936 -11.07013 -10.98524 -10.95435 -10.78701 -10.70637 -10.45226 -10.31680 -9.96927 -9.82275 -9.34461 -9.08117 -8.66663 -8.61744 -8.07931 -8.05522 -7.69655 -5.80798 -3.75163 1.95588 2.13598 3.37252 3.43909 3.44896 4.23012 4.47934 4.60975 4.80989 5.13420 5.41319 5.48849 5.49638 5.55986 5.71193 6.00015 6.02042 6.16379 6.27198 6.32411 6.37340 6.56602 6.63520 6.70253 6.84915 6.96426 7.04294 7.06834 7.09863 7.27668 7.45407 7.57021 7.70350 7.78468 7.85485 8.22828 8.29619 8.53651 8.67587 9.00432 9.71592 11.21942 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.021960 B = 0.010857 C = 0.009023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.763989 B = 2578.357649 C = 3102.287126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.099 3.901 3 C -0.136 4.136 4 C -0.442 4.442 5 H 0.053 0.947 6 C 0.059 3.941 7 N -0.893 5.893 8 Si 0.888 3.112 9 H -0.288 1.288 10 H -0.291 1.291 11 H -0.276 1.276 12 C -0.009 4.009 13 C -0.135 4.135 14 C -0.123 4.123 15 C -0.152 4.152 16 C -0.117 4.117 17 C -0.085 4.085 18 C 0.125 3.875 19 O -0.478 6.478 20 C -0.226 4.226 21 C -0.148 4.148 22 H 0.007 0.993 23 H 0.094 0.906 24 H 0.025 0.975 25 H 0.068 0.932 26 H 0.069 0.931 27 H -0.004 1.004 28 H 0.255 0.745 29 H 0.124 0.876 30 H 0.109 0.891 31 H 0.109 0.891 32 H 0.113 0.887 33 H 0.372 0.628 34 H 0.089 0.911 35 H 0.093 0.907 36 H 0.098 0.902 37 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.856 -2.495 8.259 9.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.098 3.902 3 C -0.193 4.193 4 C -0.480 4.480 5 H 0.071 0.929 6 C -0.140 4.140 7 N -0.534 5.534 8 Si 0.717 3.283 9 H -0.215 1.215 10 H -0.217 1.217 11 H -0.201 1.201 12 C -0.009 4.009 13 C -0.153 4.153 14 C -0.141 4.141 15 C -0.171 4.171 16 C -0.135 4.135 17 C -0.085 4.085 18 C 0.083 3.917 19 O -0.287 6.287 20 C -0.264 4.264 21 C -0.185 4.185 22 H 0.026 0.974 23 H 0.112 0.888 24 H 0.044 0.956 25 H 0.087 0.913 26 H 0.088 0.912 27 H 0.015 0.985 28 H 0.065 0.935 29 H 0.141 0.859 30 H 0.128 0.872 31 H 0.127 0.873 32 H 0.131 0.869 33 H 0.225 0.775 34 H 0.107 0.893 35 H 0.111 0.889 36 H 0.117 0.883 37 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 4.770 -1.757 8.063 9.532 hybrid contribution 0.356 -1.062 -0.725 1.335 sum 5.127 -2.820 7.339 9.385 Atomic orbital electron populations 1.21989 0.97999 0.98340 1.01355 1.17240 0.92080 0.92357 0.88494 1.22093 1.02740 0.97158 0.97302 1.20763 1.25331 1.12548 0.89320 0.92894 1.24713 0.95678 0.95367 0.98193 1.69790 1.35864 1.25137 1.22587 0.86675 0.78908 0.79104 0.83600 1.21474 1.21693 1.20146 1.20590 0.91556 0.93036 0.95695 1.21311 1.00375 0.98930 0.94712 1.21070 0.95347 1.00041 0.97662 1.20825 0.93610 1.02576 1.00042 1.20924 0.98953 0.98515 0.95154 1.19363 0.93881 0.99881 0.95372 1.19541 0.90019 0.97750 0.84383 1.87167 1.93626 1.30210 1.17689 1.23818 0.95565 1.04617 1.02374 1.23091 1.01796 0.91296 1.02339 0.97361 0.88772 0.95619 0.91297 0.91203 0.98531 0.93450 0.85863 0.87247 0.87287 0.86909 0.77494 0.89260 0.88902 0.88337 0.88834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.30 6.97 37.16 0.26 -3.04 16 2 C 0.10 2.33 0.48 -156.81 -0.08 2.25 16 3 C -0.14 -3.25 7.26 37.16 0.27 -2.98 16 4 C -0.44 -11.06 4.65 -34.44 -0.16 -11.22 16 5 H 0.05 1.30 5.34 -52.48 -0.28 1.02 16 6 C 0.06 1.55 5.15 -17.82 -0.09 1.46 16 7 N -0.89 -24.36 9.46 55.43 0.52 -23.84 16 8 Si 0.89 20.85 29.54 -169.99 -5.02 15.83 16 9 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 10 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 11 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 12 C -0.01 -0.18 4.68 -104.62 -0.49 -0.67 16 13 C -0.14 -2.62 9.02 -39.58 -0.36 -2.98 16 14 C -0.12 -2.05 10.05 -39.58 -0.40 -2.44 16 15 C -0.15 -2.41 10.05 -39.59 -0.40 -2.81 16 16 C -0.12 -1.98 9.35 -39.59 -0.37 -2.35 16 17 C -0.08 -1.64 5.30 -104.62 -0.55 -2.19 16 18 C 0.13 2.36 1.62 -91.77 -0.15 2.21 16 19 O -0.48 -10.21 8.92 -35.23 -0.31 -10.52 16 20 C -0.23 -3.53 9.78 -26.69 -0.26 -3.79 16 21 C -0.15 -2.55 8.03 -26.69 -0.21 -2.76 16 22 H 0.01 0.17 7.99 -51.93 -0.41 -0.25 16 23 H 0.09 2.46 5.77 -51.93 -0.30 2.16 16 24 H 0.02 0.58 6.98 -51.93 -0.36 0.21 16 25 H 0.07 1.60 2.90 -51.93 -0.15 1.45 16 26 H 0.07 1.84 6.56 -51.93 -0.34 1.50 16 27 H 0.00 -0.10 8.11 -51.93 -0.42 -0.52 16 28 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 29 H 0.12 2.33 5.89 -52.49 -0.31 2.02 16 30 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 31 H 0.11 1.41 8.06 -52.48 -0.42 0.99 16 32 H 0.11 1.64 6.13 -52.49 -0.32 1.32 16 33 H 0.37 7.52 6.83 45.56 0.31 7.84 16 34 H 0.09 1.24 6.29 -51.93 -0.33 0.91 16 35 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 36 H 0.10 1.72 7.93 -51.93 -0.41 1.30 16 37 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 LS Contribution 279.03 15.07 4.21 4.21 Total: -1.00 -27.23 279.03 -7.75 -34.98 By element: Atomic # 1 Polarization: 14.81 SS G_CDS: -4.15 Total: 10.66 kcal Atomic # 6 Polarization: -28.33 SS G_CDS: -2.99 Total: -31.32 kcal Atomic # 7 Polarization: -24.36 SS G_CDS: 0.52 Total: -23.84 kcal Atomic # 8 Polarization: -10.21 SS G_CDS: -0.31 Total: -10.52 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -27.23 -7.75 -34.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260484712.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.312 kcal (2) G-P(sol) polarization free energy of solvation -27.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.982 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds