Wall clock time and date at job start Mon Mar 30 2020 05:29:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.46809 * 2 1 4 4 C 1.50694 * 109.47334 * 239.99727 * 2 1 3 5 5 H 1.08005 * 120.00228 * 237.39689 * 4 2 1 6 6 C 1.37872 * 120.00293 * 57.39641 * 4 2 1 7 7 N 1.31518 * 120.00164 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 120.00314 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47025 * 90.00295 * 8 6 4 10 10 H 1.48499 * 109.47252 * 210.00103 * 8 6 4 11 11 H 1.48501 * 109.47314 * 330.00394 * 8 6 4 12 12 C 1.50702 * 109.46507 * 119.99755 * 2 1 3 13 13 C 1.38252 * 120.00321 * 6.22434 * 12 2 1 14 14 C 1.38218 * 120.00048 * 179.97438 * 13 12 2 15 15 C 1.38255 * 119.99646 * 359.97438 * 14 13 12 16 16 C 1.38207 * 120.00472 * 359.97438 * 15 14 13 17 17 C 1.38220 * 119.99534 * 186.25249 * 12 2 1 18 18 C 1.50703 * 120.00172 * 359.97438 * 17 12 2 19 19 O 1.42899 * 115.54854 * 313.13460 * 18 17 12 20 20 C 1.52993 * 117.49877 * 167.46655 * 18 17 12 21 21 C 1.53001 * 117.49882 * 98.80223 * 18 17 12 22 22 H 1.08991 * 109.47475 * 303.50683 * 1 2 3 23 23 H 1.09000 * 109.46830 * 63.50351 * 1 2 3 24 24 H 1.09001 * 109.47305 * 183.49445 * 1 2 3 25 25 H 1.09002 * 109.46390 * 190.08046 * 3 2 1 26 26 H 1.08993 * 109.47007 * 310.07798 * 3 2 1 27 27 H 1.08999 * 109.47309 * 70.08111 * 3 2 1 28 28 H 0.96994 * 120.00465 * 179.97438 * 7 6 4 29 29 H 1.08000 * 120.00182 * 0.02562 * 13 12 2 30 30 H 1.07999 * 120.00172 * 180.02562 * 14 13 12 31 31 H 1.08003 * 119.99325 * 179.71951 * 15 14 13 32 32 H 1.08001 * 120.00432 * 180.02562 * 16 15 14 33 33 H 0.96699 * 114.00211 * 306.65216 * 19 18 17 34 34 H 1.08999 * 117.50182 * 359.97438 * 20 18 17 35 35 H 1.08996 * 117.49939 * 145.01790 * 20 18 17 36 36 H 1.08991 * 117.49887 * 214.97946 * 21 18 17 37 37 H 1.09001 * 117.49479 * 359.97438 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6876 -1.5634 -1.1318 6 6 1.6557 -0.2716 -2.4819 7 7 0.8583 0.7673 -2.6021 8 14 2.2790 -1.1519 -4.0071 9 1 1.3325 -2.2354 -4.3748 10 1 2.3839 -0.1845 -5.1289 11 1 3.6161 -1.7355 -3.7302 12 6 2.0322 -0.7104 1.2306 13 6 1.1404 -1.3470 2.0736 14 6 1.6011 -1.9990 3.2020 15 6 2.9538 -2.0149 3.4871 16 6 3.8455 -1.3794 2.6438 17 6 3.3844 -0.7250 1.5166 18 6 4.3565 -0.0310 0.5976 19 8 4.1831 -0.2952 -0.7960 20 6 5.7851 0.1742 1.1053 21 6 4.8319 1.3672 0.9977 22 1 -0.3634 0.5672 0.8568 23 1 -0.3633 0.4585 -0.9197 24 1 -0.3634 -1.0257 0.0626 25 1 3.1150 1.4478 -0.1799 26 1 1.5373 2.0056 -0.7863 27 1 1.8310 1.9018 0.9662 28 1 0.5935 1.0762 -3.4826 29 1 0.0838 -1.3356 1.8502 30 1 0.9045 -2.4966 3.8603 31 1 3.3133 -2.5205 4.3712 32 1 4.9022 -1.3923 2.8663 33 1 4.1691 -1.2360 -1.0193 34 1 6.0218 -0.1923 2.1041 35 1 6.5927 0.1081 0.3763 36 1 5.0127 2.0853 0.1980 37 1 4.4411 1.7852 1.9255 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260484712.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:29:56 Heat of formation + Delta-G solvation = 19.759282 kcal Electronic energy + Delta-G solvation = -19058.348483 eV Core-core repulsion = 16381.232690 eV Total energy + Delta-G solvation = -2677.115793 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.20803 -38.27976 -36.98199 -34.60695 -33.33077 -31.38737 -30.08421 -27.75053 -27.07019 -24.09038 -23.70386 -23.19536 -21.03129 -20.52037 -18.52081 -17.96140 -16.91085 -16.44915 -15.67060 -15.45240 -15.34272 -15.03057 -14.82354 -14.44914 -13.86497 -13.33420 -13.30037 -12.90250 -12.67402 -12.63269 -12.62449 -12.39495 -12.22959 -12.15252 -12.10539 -11.82629 -11.33050 -11.11269 -10.80491 -10.41350 -10.21670 -9.93369 -9.45390 -9.15132 -7.78645 -5.75304 0.60584 0.75994 1.47841 1.50984 1.56255 2.58726 2.89562 3.15205 3.35194 3.57162 3.82544 4.14454 4.23286 4.32654 4.38843 4.56787 4.74284 4.83525 4.87541 4.91338 4.94101 5.03916 5.08121 5.16630 5.19275 5.29837 5.38532 5.43615 5.61819 5.73310 5.73966 5.80656 5.85569 5.98708 6.26316 6.38193 6.43847 6.60154 7.01391 7.18618 7.71982 9.22472 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.021960 B = 0.010857 C = 0.009023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.763989 B = 2578.357649 C = 3102.287126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.093 3.907 3 C -0.124 4.124 4 C -0.429 4.429 5 H 0.057 0.943 6 C 0.011 3.989 7 N -0.922 5.922 8 Si 0.936 3.064 9 H -0.290 1.290 10 H -0.303 1.303 11 H -0.263 1.263 12 C -0.043 4.043 13 C -0.153 4.153 14 C -0.121 4.121 15 C -0.141 4.141 16 C -0.116 4.116 17 C -0.095 4.095 18 C 0.096 3.904 19 O -0.502 6.502 20 C -0.191 4.191 21 C -0.157 4.157 22 H 0.016 0.984 23 H 0.065 0.935 24 H 0.026 0.974 25 H 0.074 0.926 26 H 0.036 0.964 27 H -0.001 1.001 28 H 0.248 0.752 29 H 0.116 0.884 30 H 0.140 0.860 31 H 0.149 0.851 32 H 0.142 0.858 33 H 0.372 0.628 34 H 0.116 0.884 35 H 0.101 0.899 36 H 0.088 0.912 37 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.749 -4.115 10.718 13.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.093 3.907 3 C -0.181 4.181 4 C -0.468 4.468 5 H 0.075 0.925 6 C -0.184 4.184 7 N -0.565 5.565 8 Si 0.765 3.235 9 H -0.217 1.217 10 H -0.230 1.230 11 H -0.187 1.187 12 C -0.043 4.043 13 C -0.171 4.171 14 C -0.139 4.139 15 C -0.159 4.159 16 C -0.134 4.134 17 C -0.095 4.095 18 C 0.054 3.946 19 O -0.311 6.311 20 C -0.228 4.228 21 C -0.194 4.194 22 H 0.035 0.965 23 H 0.084 0.916 24 H 0.045 0.955 25 H 0.092 0.908 26 H 0.055 0.945 27 H 0.018 0.982 28 H 0.057 0.943 29 H 0.134 0.866 30 H 0.158 0.842 31 H 0.166 0.834 32 H 0.159 0.841 33 H 0.225 0.775 34 H 0.134 0.866 35 H 0.119 0.881 36 H 0.106 0.894 37 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 6.677 -3.389 10.535 12.925 hybrid contribution -0.203 -0.580 -1.360 1.493 sum 6.473 -3.969 9.174 11.909 Atomic orbital electron populations 1.21852 0.98683 0.98125 1.00150 1.17177 0.91579 0.92191 0.89781 1.21954 1.02670 0.97388 0.96098 1.21036 1.24023 1.11876 0.89835 0.92539 1.25289 0.96449 0.96184 1.00465 1.69955 1.37573 1.26728 1.22239 0.85894 0.78955 0.77815 0.80820 1.21745 1.22972 1.18744 1.20404 0.93096 0.95150 0.95636 1.21377 0.99936 0.99879 0.95910 1.21398 0.96669 0.99028 0.96756 1.21301 0.92946 1.01062 1.00584 1.21248 1.00684 0.97403 0.94051 1.19473 0.93058 1.00525 0.96489 1.19755 0.92490 0.99071 0.83249 1.87075 1.94154 1.30182 1.19696 1.23831 0.93634 1.01726 1.03582 1.23126 1.02837 0.91112 1.02293 0.96519 0.91598 0.95491 0.90764 0.94502 0.98163 0.94291 0.86591 0.84216 0.83378 0.84084 0.77540 0.86593 0.88064 0.89387 0.88156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.37 6.97 71.98 0.50 -5.87 16 2 C 0.09 4.46 0.48 -53.67 -0.03 4.44 16 3 C -0.12 -6.09 7.26 71.98 0.52 -5.56 16 4 C -0.43 -21.81 4.65 25.60 0.12 -21.69 16 5 H 0.06 2.78 5.34 -2.91 -0.02 2.77 16 6 C 0.01 0.61 5.15 84.65 0.44 1.04 16 7 N -0.92 -52.45 9.46 21.45 0.20 -52.25 16 8 Si 0.94 43.66 29.54 68.60 2.03 45.68 16 9 H -0.29 -13.53 7.11 99.48 0.71 -12.83 16 10 H -0.30 -14.60 7.11 99.48 0.71 -13.89 16 11 H -0.26 -11.55 7.11 99.48 0.71 -10.85 16 12 C -0.04 -1.78 4.68 -19.86 -0.09 -1.88 16 13 C -0.15 -5.71 9.02 22.27 0.20 -5.51 16 14 C -0.12 -3.57 10.05 22.27 0.22 -3.34 16 15 C -0.14 -3.76 10.05 22.27 0.22 -3.53 16 16 C -0.12 -3.41 9.35 22.27 0.21 -3.20 16 17 C -0.10 -3.47 5.30 -19.86 -0.11 -3.58 16 18 C 0.10 3.46 1.62 -11.54 -0.02 3.44 16 19 O -0.50 -21.27 8.92 -148.98 -1.33 -22.59 16 20 C -0.19 -5.28 9.78 30.62 0.30 -4.98 16 21 C -0.16 -5.13 8.03 30.62 0.25 -4.89 16 22 H 0.02 0.73 7.99 -2.39 -0.02 0.71 16 23 H 0.07 3.60 5.77 -2.39 -0.01 3.59 16 24 H 0.03 1.24 6.98 -2.39 -0.02 1.23 16 25 H 0.07 3.52 2.90 -2.39 -0.01 3.52 16 26 H 0.04 2.01 6.56 -2.39 -0.02 2.00 16 27 H 0.00 -0.03 8.11 -2.39 -0.02 -0.05 16 28 H 0.25 13.88 8.31 -92.71 -0.77 13.11 16 29 H 0.12 4.35 5.89 -2.91 -0.02 4.33 16 30 H 0.14 3.23 8.06 -2.91 -0.02 3.21 16 31 H 0.15 2.83 8.06 -2.91 -0.02 2.80 16 32 H 0.14 3.28 6.13 -2.91 -0.02 3.26 16 33 H 0.37 14.95 6.83 -74.06 -0.51 14.44 16 34 H 0.12 2.60 6.29 -2.39 -0.02 2.59 16 35 H 0.10 2.66 8.14 -2.39 -0.02 2.64 16 36 H 0.09 3.03 7.93 -2.39 -0.02 3.01 16 37 H 0.10 3.11 8.14 -2.39 -0.02 3.09 16 Total: -1.00 -59.83 279.03 4.22 -55.61 By element: Atomic # 1 Polarization: 28.08 SS G_CDS: 0.58 Total: 28.67 kcal Atomic # 6 Polarization: -57.85 SS G_CDS: 2.74 Total: -55.12 kcal Atomic # 7 Polarization: -52.45 SS G_CDS: 0.20 Total: -52.25 kcal Atomic # 8 Polarization: -21.27 SS G_CDS: -1.33 Total: -22.59 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.68 kcal Total: -59.83 4.22 -55.61 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260484712.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.367 kcal (2) G-P(sol) polarization free energy of solvation -59.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.608 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds