Wall clock time and date at job start Mon Mar 30 2020 05:46:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08999 * 109.47273 * 2 1 4 4 O 1.42902 * 109.47407 * 239.99867 * 2 1 3 5 5 C 1.53002 * 109.47417 * 119.99907 * 2 1 3 6 6 C 1.50699 * 109.47590 * 185.00097 * 5 2 1 7 7 C 1.38251 * 119.99928 * 264.64269 * 6 5 2 8 8 C 1.38210 * 120.00240 * 179.78739 * 7 6 5 9 9 C 1.38259 * 119.99625 * 0.43701 * 8 7 6 10 10 C 1.38217 * 120.00019 * 359.81976 * 9 8 7 11 11 C 1.50702 * 119.99861 * 179.97438 * 10 9 8 12 12 C 1.50696 * 115.54889 * 236.68729 * 11 10 9 13 13 H 1.07999 * 120.00207 * 275.12612 * 12 11 10 14 14 C 1.37876 * 120.00166 * 95.12532 * 12 11 10 15 15 N 1.31508 * 120.00427 * 173.37164 * 14 12 11 16 16 Si 1.86803 * 119.99704 * 353.37767 * 14 12 11 17 17 H 1.48503 * 109.47192 * 84.78668 * 16 14 12 18 18 H 1.48497 * 109.46835 * 204.77996 * 16 14 12 19 19 H 1.48495 * 109.47289 * 324.78305 * 16 14 12 20 20 C 1.53001 * 117.49850 * 91.01686 * 11 10 9 21 21 C 1.53002 * 117.50011 * 22.35904 * 11 10 9 22 22 C 1.38208 * 119.99711 * 84.91572 * 6 5 2 23 23 H 1.08999 * 109.47273 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.47002 * 300.00248 * 1 2 3 25 25 H 1.08999 * 109.47354 * 59.99654 * 1 2 3 26 26 H 0.96697 * 113.99402 * 300.00426 * 4 2 1 27 27 H 1.09005 * 109.47007 * 304.99979 * 5 2 1 28 28 H 1.09000 * 109.46923 * 64.99542 * 5 2 1 29 29 H 1.08004 * 119.99978 * 359.97438 * 7 6 5 30 30 H 1.08003 * 120.00487 * 180.27780 * 8 7 6 31 31 H 1.08004 * 120.00107 * 179.83345 * 9 8 7 32 32 H 0.96998 * 120.00808 * 179.97438 * 15 14 12 33 33 H 1.09001 * 117.49950 * 0.02562 * 20 11 10 34 34 H 1.08996 * 117.49598 * 145.01391 * 20 11 10 35 35 H 1.09001 * 117.49815 * 214.98125 * 21 11 10 36 36 H 1.09006 * 117.49448 * 359.97438 * 21 11 10 37 37 H 1.07995 * 120.00582 * 359.97438 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6737 -1.1668 5 6 2.0400 -0.7212 1.2492 6 6 3.5419 -0.6149 1.3128 7 6 4.3289 -1.6359 0.8133 8 6 5.7064 -1.5365 0.8676 9 6 6.2972 -0.4200 1.4295 10 6 5.5103 0.5984 1.9337 11 6 6.1544 1.8152 2.5467 12 6 5.7502 2.1188 3.9664 13 1 4.8544 2.6892 4.1626 14 6 6.5240 1.6684 5.0148 15 7 6.2461 2.0413 6.2449 16 14 7.9674 0.5285 4.6880 17 1 9.1633 1.3336 4.3318 18 1 8.2534 -0.2699 5.9070 19 1 7.6329 -0.3844 3.5655 20 6 6.4427 3.0019 1.6251 21 6 7.5941 2.1338 2.1386 22 6 4.1324 0.5008 1.8755 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 1.7209 -1.5952 -1.2328 27 1 1.6054 -0.2617 2.1370 28 1 1.7516 -1.7715 1.2056 29 1 3.8673 -2.5099 0.3780 30 1 6.3212 -2.3321 0.4733 31 1 7.3736 -0.3434 1.4744 32 1 6.7903 1.7242 6.9826 33 1 6.1662 2.9028 0.5754 34 1 6.3403 4.0022 2.0457 35 1 8.2489 2.5633 2.8968 36 1 8.0756 1.4630 1.4269 37 1 3.5177 1.2966 2.2692 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260484808.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:59 Heat of formation + Delta-G solvation = -14.361245 kcal Electronic energy + Delta-G solvation = -17771.876820 eV Core-core repulsion = 15093.281450 eV Total energy + Delta-G solvation = -2678.595370 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.26176 -37.64596 -36.08252 -32.57433 -32.06489 -30.24339 -29.93299 -26.27418 -25.75891 -22.40643 -22.31503 -21.59644 -20.55344 -18.77871 -16.71402 -16.24065 -15.88575 -15.61965 -14.89288 -14.39062 -14.16444 -14.11486 -13.69770 -12.99401 -12.68853 -12.61858 -12.27718 -12.03832 -11.90967 -11.61899 -11.22120 -11.09791 -10.85831 -10.74216 -10.53231 -10.30431 -10.03475 -9.92320 -9.63378 -9.36875 -8.62035 -8.55339 -8.04233 -7.68937 -6.12921 -4.15669 2.02794 2.14351 3.31251 3.41198 3.49141 4.32548 4.43787 4.47660 4.83084 4.97110 5.02419 5.15575 5.23815 5.34766 5.43542 5.59649 5.60527 5.70131 5.81143 5.94197 5.98268 6.00539 6.13334 6.14645 6.17049 6.29904 6.49191 6.60105 6.72165 6.76778 6.92031 7.11631 7.14467 7.27528 7.49987 7.67828 7.73430 7.76095 8.46789 8.88242 9.50492 10.98214 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.027100 B = 0.006818 C = 0.006519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.974005 B = 4105.796311 C = 4293.817826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.106 3.894 3 H 0.100 0.900 4 O -0.558 6.558 5 C -0.108 4.108 6 C -0.086 4.086 7 C -0.130 4.130 8 C -0.126 4.126 9 C -0.130 4.130 10 C -0.011 4.011 11 C 0.031 3.969 12 C -0.484 4.484 13 H 0.079 0.921 14 C 0.080 3.920 15 N -0.896 5.896 16 Si 0.874 3.126 17 H -0.277 1.277 18 H -0.298 1.298 19 H -0.249 1.249 20 C -0.172 4.172 21 C -0.204 4.204 22 C -0.097 4.097 23 H 0.056 0.944 24 H 0.067 0.933 25 H 0.061 0.939 26 H 0.368 0.632 27 H 0.081 0.919 28 H 0.068 0.932 29 H 0.107 0.893 30 H 0.109 0.891 31 H 0.113 0.887 32 H 0.265 0.735 33 H 0.073 0.927 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.075 0.925 37 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.847 -6.586 -11.571 14.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.047 3.953 3 H 0.118 0.882 4 O -0.362 6.362 5 C -0.145 4.145 6 C -0.086 4.086 7 C -0.148 4.148 8 C -0.145 4.145 9 C -0.148 4.148 10 C -0.012 4.012 11 C 0.030 3.970 12 C -0.521 4.521 13 H 0.097 0.903 14 C -0.123 4.123 15 N -0.532 5.532 16 Si 0.702 3.298 17 H -0.203 1.203 18 H -0.225 1.225 19 H -0.173 1.173 20 C -0.210 4.210 21 C -0.241 4.241 22 C -0.115 4.115 23 H 0.075 0.925 24 H 0.086 0.914 25 H 0.080 0.920 26 H 0.214 0.786 27 H 0.099 0.901 28 H 0.087 0.913 29 H 0.125 0.875 30 H 0.127 0.873 31 H 0.131 0.869 32 H 0.075 0.925 33 H 0.091 0.909 34 H 0.107 0.893 35 H 0.109 0.891 36 H 0.094 0.906 37 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -6.529 -6.011 -11.472 14.504 hybrid contribution 0.635 -1.194 0.295 1.384 sum -5.895 -7.205 -11.177 14.546 Atomic orbital electron populations 1.22523 0.96718 1.02257 1.02739 1.21939 0.92034 0.97103 0.84219 0.88186 1.86637 1.77311 1.28423 1.43847 1.21277 0.93091 1.01100 0.99071 1.19551 0.94244 0.95091 0.99756 1.20660 0.93508 0.98492 1.02153 1.20930 0.94741 0.97888 1.00899 1.21092 0.99643 0.94422 0.99688 1.19765 0.93197 0.95641 0.92563 1.18236 0.93010 0.90460 0.95271 1.20184 1.11391 1.34866 0.85619 0.90286 1.24969 0.97342 0.95218 0.94745 1.69888 1.40252 1.43970 0.99138 0.86953 0.82852 0.81902 0.78054 1.20296 1.22483 1.17269 1.22887 1.03691 0.96669 0.97704 1.23048 0.92905 1.04660 1.03516 1.20747 0.94607 0.97256 0.98911 0.92530 0.91424 0.91973 0.78607 0.90074 0.91324 0.87519 0.87282 0.86909 0.92501 0.90884 0.89277 0.89120 0.90622 0.86299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.71 9.53 37.15 0.35 -1.35 16 2 C 0.11 1.26 3.57 -26.73 -0.10 1.17 16 3 H 0.10 1.34 8.14 -51.93 -0.42 0.92 16 4 O -0.56 -6.97 13.05 -35.23 -0.46 -7.42 16 5 C -0.11 -1.39 5.03 -27.88 -0.14 -1.53 16 6 C -0.09 -1.47 4.91 -104.63 -0.51 -1.98 16 7 C -0.13 -2.13 9.63 -39.59 -0.38 -2.51 16 8 C -0.13 -2.22 10.05 -39.58 -0.40 -2.62 16 9 C -0.13 -2.63 7.99 -39.58 -0.32 -2.95 16 10 C -0.01 -0.24 5.07 -104.62 -0.53 -0.77 16 11 C 0.03 0.73 1.15 -156.81 -0.18 0.55 16 12 C -0.48 -13.40 9.21 -34.44 -0.32 -13.72 16 13 H 0.08 2.36 8.06 -52.49 -0.42 1.94 16 14 C 0.08 2.29 5.46 -17.82 -0.10 2.20 16 15 N -0.90 -27.15 13.96 55.43 0.77 -26.37 16 16 Si 0.87 21.77 24.94 -169.99 -4.24 17.53 16 17 H -0.28 -6.69 6.67 56.52 0.38 -6.31 16 18 H -0.30 -7.52 7.11 56.52 0.40 -7.12 16 19 H -0.25 -5.90 4.98 56.52 0.28 -5.62 16 20 C -0.17 -3.59 9.94 -26.69 -0.27 -3.86 16 21 C -0.20 -4.44 7.03 -26.69 -0.19 -4.62 16 22 C -0.10 -1.95 9.18 -39.58 -0.36 -2.31 16 23 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 24 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.37 3.15 9.04 45.56 0.41 3.56 16 27 H 0.08 1.04 8.12 -51.93 -0.42 0.62 16 28 H 0.07 0.76 8.05 -51.93 -0.42 0.34 16 29 H 0.11 1.44 8.06 -52.48 -0.42 1.02 16 30 H 0.11 1.61 8.06 -52.48 -0.42 1.19 16 31 H 0.11 2.23 5.92 -52.48 -0.31 1.92 16 32 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 33 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 34 H 0.09 1.85 8.14 -51.93 -0.42 1.43 16 35 H 0.09 2.07 6.45 -51.93 -0.33 1.74 16 36 H 0.08 1.49 6.67 -51.93 -0.35 1.15 16 37 H 0.12 2.38 8.06 -52.49 -0.42 1.96 16 LS Contribution 302.11 15.07 4.55 4.55 Total: -1.00 -31.05 302.11 -7.73 -38.79 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: -4.93 Total: 7.26 kcal Atomic # 6 Polarization: -30.89 SS G_CDS: -3.43 Total: -34.33 kcal Atomic # 7 Polarization: -27.15 SS G_CDS: 0.77 Total: -26.37 kcal Atomic # 8 Polarization: -6.97 SS G_CDS: -0.46 Total: -7.42 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.24 Total: 17.53 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -31.05 -7.73 -38.79 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260484808.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.426 kcal (2) G-P(sol) polarization free energy of solvation -31.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds