Wall clock time and date at job start Mon Mar 30 2020 05:46:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08999 * 109.47273 * 2 1 4 4 O 1.42902 * 109.47407 * 239.99867 * 2 1 3 5 5 C 1.53002 * 109.47417 * 119.99907 * 2 1 3 6 6 C 1.50699 * 109.47590 * 185.00097 * 5 2 1 7 7 C 1.38251 * 119.99928 * 264.64269 * 6 5 2 8 8 C 1.38210 * 120.00240 * 179.78739 * 7 6 5 9 9 C 1.38259 * 119.99625 * 0.43701 * 8 7 6 10 10 C 1.38217 * 120.00019 * 359.81976 * 9 8 7 11 11 C 1.50702 * 119.99861 * 179.97438 * 10 9 8 12 12 C 1.50696 * 115.54889 * 236.68729 * 11 10 9 13 13 H 1.07999 * 120.00207 * 275.12612 * 12 11 10 14 14 C 1.37876 * 120.00166 * 95.12532 * 12 11 10 15 15 N 1.31508 * 120.00427 * 173.37164 * 14 12 11 16 16 Si 1.86803 * 119.99704 * 353.37767 * 14 12 11 17 17 H 1.48503 * 109.47192 * 84.78668 * 16 14 12 18 18 H 1.48497 * 109.46835 * 204.77996 * 16 14 12 19 19 H 1.48495 * 109.47289 * 324.78305 * 16 14 12 20 20 C 1.53001 * 117.49850 * 91.01686 * 11 10 9 21 21 C 1.53002 * 117.50011 * 22.35904 * 11 10 9 22 22 C 1.38208 * 119.99711 * 84.91572 * 6 5 2 23 23 H 1.08999 * 109.47273 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.47002 * 300.00248 * 1 2 3 25 25 H 1.08999 * 109.47354 * 59.99654 * 1 2 3 26 26 H 0.96697 * 113.99402 * 300.00426 * 4 2 1 27 27 H 1.09005 * 109.47007 * 304.99979 * 5 2 1 28 28 H 1.09000 * 109.46923 * 64.99542 * 5 2 1 29 29 H 1.08004 * 119.99978 * 359.97438 * 7 6 5 30 30 H 1.08003 * 120.00487 * 180.27780 * 8 7 6 31 31 H 1.08004 * 120.00107 * 179.83345 * 9 8 7 32 32 H 0.96998 * 120.00808 * 179.97438 * 15 14 12 33 33 H 1.09001 * 117.49950 * 0.02562 * 20 11 10 34 34 H 1.08996 * 117.49598 * 145.01391 * 20 11 10 35 35 H 1.09001 * 117.49815 * 214.98125 * 21 11 10 36 36 H 1.09006 * 117.49448 * 359.97438 * 21 11 10 37 37 H 1.07995 * 120.00582 * 359.97438 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6737 -1.1668 5 6 2.0400 -0.7212 1.2492 6 6 3.5419 -0.6149 1.3128 7 6 4.3289 -1.6359 0.8133 8 6 5.7064 -1.5365 0.8676 9 6 6.2972 -0.4200 1.4295 10 6 5.5103 0.5984 1.9337 11 6 6.1544 1.8152 2.5467 12 6 5.7502 2.1188 3.9664 13 1 4.8544 2.6892 4.1626 14 6 6.5240 1.6684 5.0148 15 7 6.2461 2.0413 6.2449 16 14 7.9674 0.5285 4.6880 17 1 9.1633 1.3336 4.3318 18 1 8.2534 -0.2699 5.9070 19 1 7.6329 -0.3844 3.5655 20 6 6.4427 3.0019 1.6251 21 6 7.5941 2.1338 2.1386 22 6 4.1324 0.5008 1.8755 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 1.7209 -1.5952 -1.2328 27 1 1.6054 -0.2617 2.1370 28 1 1.7516 -1.7715 1.2056 29 1 3.8673 -2.5099 0.3780 30 1 6.3212 -2.3321 0.4733 31 1 7.3736 -0.3434 1.4744 32 1 6.7903 1.7242 6.9826 33 1 6.1662 2.9028 0.5754 34 1 6.3403 4.0022 2.0457 35 1 8.2489 2.5633 2.8968 36 1 8.0756 1.4630 1.4269 37 1 3.5177 1.2966 2.2692 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260484808.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:59 Heat of formation + Delta-G solvation = -34.333951 kcal Electronic energy + Delta-G solvation = -17772.742902 eV Core-core repulsion = 15093.281450 eV Total energy + Delta-G solvation = -2679.461451 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.67232 -38.82977 -37.56581 -34.29829 -33.63030 -31.44187 -31.23949 -27.91078 -27.32130 -23.96921 -23.76045 -22.82071 -21.96100 -20.47060 -18.53856 -17.56487 -17.13900 -16.86635 -16.60853 -15.76639 -15.61696 -15.20849 -15.05308 -14.75079 -14.35097 -14.15683 -13.46297 -13.21608 -13.14436 -12.90126 -12.89659 -12.54105 -12.39462 -12.11281 -11.96931 -11.73977 -11.68787 -11.48504 -11.15584 -10.96435 -10.69715 -10.41718 -9.45111 -9.18121 -8.33251 -6.39637 0.62012 0.70645 1.32799 1.38366 1.52253 2.36469 2.91435 3.06219 3.23883 3.57473 3.87856 3.92993 4.08876 4.21770 4.29963 4.32433 4.38720 4.41094 4.46651 4.60959 4.65926 4.79388 4.85901 4.93030 4.94234 5.01659 5.10759 5.21641 5.32454 5.36385 5.41975 5.43291 5.61047 5.75435 5.86802 5.98989 6.28717 6.33207 6.66945 6.97525 7.29762 8.81656 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.027100 B = 0.006818 C = 0.006519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.974005 B = 4105.796311 C = 4293.817826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.111 3.889 3 H 0.074 0.926 4 O -0.574 6.574 5 C -0.105 4.105 6 C -0.082 4.082 7 C -0.126 4.126 8 C -0.123 4.123 9 C -0.149 4.149 10 C -0.037 4.037 11 C 0.009 3.991 12 C -0.483 4.483 13 H 0.034 0.966 14 C 0.024 3.976 15 N -0.946 5.946 16 Si 0.932 3.068 17 H -0.263 1.263 18 H -0.304 1.304 19 H -0.227 1.227 20 C -0.161 4.161 21 C -0.195 4.195 22 C -0.124 4.124 23 H 0.076 0.924 24 H 0.068 0.932 25 H 0.063 0.937 26 H 0.386 0.614 27 H 0.076 0.924 28 H 0.098 0.902 29 H 0.146 0.854 30 H 0.143 0.857 31 H 0.116 0.884 32 H 0.266 0.734 33 H 0.096 0.904 34 H 0.081 0.919 35 H 0.076 0.924 36 H 0.103 0.897 37 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.820 -9.360 -14.131 18.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.052 3.948 3 H 0.093 0.907 4 O -0.382 6.382 5 C -0.143 4.143 6 C -0.082 4.082 7 C -0.144 4.144 8 C -0.141 4.141 9 C -0.167 4.167 10 C -0.037 4.037 11 C 0.009 3.991 12 C -0.521 4.521 13 H 0.052 0.948 14 C -0.173 4.173 15 N -0.586 5.586 16 Si 0.757 3.243 17 H -0.188 1.188 18 H -0.231 1.231 19 H -0.150 1.150 20 C -0.198 4.198 21 C -0.232 4.232 22 C -0.142 4.142 23 H 0.095 0.905 24 H 0.087 0.913 25 H 0.082 0.918 26 H 0.235 0.765 27 H 0.095 0.905 28 H 0.116 0.884 29 H 0.164 0.836 30 H 0.161 0.839 31 H 0.134 0.866 32 H 0.074 0.926 33 H 0.115 0.885 34 H 0.100 0.900 35 H 0.095 0.905 36 H 0.121 0.879 37 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -6.514 -8.786 -14.064 17.816 hybrid contribution 0.487 -0.297 1.035 1.182 sum -6.027 -9.083 -13.029 16.988 Atomic orbital electron populations 1.22437 0.94431 1.03670 1.02919 1.21779 0.93669 0.95700 0.83617 0.90749 1.86598 1.77763 1.30051 1.43740 1.21347 0.90378 1.03076 0.99480 1.19952 0.96579 0.93850 0.97860 1.21141 0.93280 0.99141 1.00796 1.21340 0.95712 0.97577 0.99480 1.21201 0.99727 0.94984 1.00833 1.19634 0.93940 0.95483 0.94642 1.18107 0.94820 0.92740 0.93467 1.20341 1.09567 1.33594 0.88581 0.94804 1.25795 1.00392 0.96850 0.94311 1.70033 1.42151 1.46137 1.00267 0.86030 0.79793 0.80258 0.78214 1.18847 1.23124 1.14999 1.22896 1.02837 0.95622 0.98470 1.23058 0.91945 1.04759 1.03456 1.20795 0.94283 0.98474 1.00679 0.90479 0.91289 0.91803 0.76464 0.90511 0.88369 0.83613 0.83946 0.86640 0.92550 0.88522 0.90030 0.90517 0.87916 0.88296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.82 9.53 71.98 0.69 -2.14 16 2 C 0.11 2.43 3.57 30.59 0.11 2.54 16 3 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 4 O -0.57 -12.57 13.05 -148.98 -1.94 -14.51 16 5 C -0.11 -2.47 5.03 29.85 0.15 -2.32 16 6 C -0.08 -2.63 4.91 -19.87 -0.10 -2.73 16 7 C -0.13 -3.61 9.63 22.27 0.21 -3.40 16 8 C -0.12 -3.83 10.05 22.27 0.22 -3.61 16 9 C -0.15 -5.66 7.99 22.27 0.18 -5.48 16 10 C -0.04 -1.58 5.07 -19.86 -0.10 -1.68 16 11 C 0.01 0.45 1.15 -53.67 -0.06 0.39 16 12 C -0.48 -28.06 9.21 25.60 0.24 -27.83 16 13 H 0.03 2.19 8.06 -2.91 -0.02 2.16 16 14 C 0.02 1.44 5.46 84.66 0.46 1.90 16 15 N -0.95 -59.96 13.96 21.45 0.30 -59.66 16 16 Si 0.93 45.21 24.94 68.60 1.71 46.92 16 17 H -0.26 -12.09 6.67 99.48 0.66 -11.43 16 18 H -0.30 -14.90 7.11 99.48 0.71 -14.19 16 19 H -0.23 -10.15 4.98 99.48 0.50 -9.66 16 20 C -0.16 -6.70 9.94 30.62 0.30 -6.39 16 21 C -0.20 -8.25 7.03 30.62 0.22 -8.03 16 22 C -0.12 -5.01 9.18 22.27 0.20 -4.81 16 23 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 24 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 25 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 26 H 0.39 4.99 9.04 -74.06 -0.67 4.32 16 27 H 0.08 1.88 8.12 -2.38 -0.02 1.86 16 28 H 0.10 1.74 8.05 -2.39 -0.02 1.72 16 29 H 0.15 3.05 8.06 -2.91 -0.02 3.02 16 30 H 0.14 3.44 8.06 -2.91 -0.02 3.41 16 31 H 0.12 4.20 5.92 -2.91 -0.02 4.19 16 32 H 0.27 15.84 8.31 -92.71 -0.77 15.07 16 33 H 0.10 3.54 8.14 -2.39 -0.02 3.52 16 34 H 0.08 3.46 8.14 -2.39 -0.02 3.44 16 35 H 0.08 3.44 6.45 -2.39 -0.02 3.42 16 36 H 0.10 3.77 6.67 -2.38 -0.02 3.75 16 37 H 0.10 4.23 8.06 -2.91 -0.02 4.20 16 Total: -1.00 -70.01 302.11 2.92 -67.10 By element: Atomic # 1 Polarization: 23.61 SS G_CDS: 0.13 Total: 23.74 kcal Atomic # 6 Polarization: -66.31 SS G_CDS: 2.72 Total: -63.59 kcal Atomic # 7 Polarization: -59.96 SS G_CDS: 0.30 Total: -59.66 kcal Atomic # 8 Polarization: -12.57 SS G_CDS: -1.94 Total: -14.51 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 1.71 Total: 46.92 kcal Total: -70.01 2.92 -67.10 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260484808.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.761 kcal (2) G-P(sol) polarization free energy of solvation -70.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds