Wall clock time and date at job start Mon Mar 30 2020 06:08:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.31017 * 125.98476 * 2 1 4 4 N 1.40208 * 108.26049 * 180.12242 * 3 2 1 5 5 C 1.46507 * 126.05177 * 180.02562 * 4 3 2 6 6 C 1.34651 * 107.90176 * 359.73415 * 4 3 2 7 7 C 1.35576 * 107.62818 * 0.05465 * 6 4 3 8 8 C 1.51056 * 124.41401 * 180.22291 * 7 6 4 9 9 H 1.09004 * 109.84749 * 227.72796 * 8 7 6 10 10 C 1.50709 * 109.90046 * 106.77798 * 8 7 6 11 11 H 1.07999 * 119.99712 * 301.72588 * 10 8 7 12 12 C 1.37874 * 119.99830 * 121.72026 * 10 8 7 13 13 N 1.31510 * 120.00168 * 7.36197 * 12 10 8 14 14 Si 1.86802 * 119.99598 * 187.35683 * 12 10 8 15 15 H 1.48505 * 109.47007 * 90.00572 * 14 12 10 16 16 H 1.48495 * 109.47176 * 209.99870 * 14 12 10 17 17 H 1.48501 * 109.47435 * 330.00794 * 14 12 10 18 18 C 1.53455 * 107.54351 * 347.23960 * 8 7 6 19 19 C 1.52679 * 117.78504 * 190.55433 * 18 8 7 20 20 C 1.52777 * 117.61405 * 259.48642 * 18 8 7 21 21 C 1.53161 * 114.78165 * 44.73011 * 18 8 7 22 22 C 1.50761 * 127.05342 * 179.83204 * 6 4 3 23 23 H 1.08997 * 109.47226 * 265.76413 * 1 2 3 24 24 H 1.09007 * 109.46914 * 25.76495 * 1 2 3 25 25 H 1.08996 * 109.47534 * 145.76239 * 1 2 3 26 26 H 1.09001 * 109.46666 * 269.69110 * 5 4 3 27 27 H 1.08999 * 109.47431 * 149.68675 * 5 4 3 28 28 H 1.09001 * 109.46619 * 29.68812 * 5 4 3 29 29 H 0.97001 * 119.99737 * 185.02367 * 13 12 10 30 30 H 1.09001 * 117.49948 * 215.03511 * 19 18 8 31 31 H 1.08994 * 117.50366 * 0.07598 * 19 18 8 32 32 H 1.08997 * 117.50930 * 359.62543 * 20 18 8 33 33 H 1.09000 * 117.50608 * 144.70175 * 20 18 8 34 34 H 1.08999 * 109.52086 * 175.25744 * 21 18 8 35 35 H 1.08993 * 109.52370 * 55.05698 * 21 18 8 36 36 H 1.09007 * 109.51585 * 282.11026 * 22 6 4 37 37 H 1.08993 * 109.51494 * 42.21606 * 22 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2768 1.0602 0.0000 4 7 3.6123 0.6333 -0.0028 5 6 4.7942 1.4991 -0.0033 6 6 3.6165 -0.7132 0.0014 7 6 2.3257 -1.1278 0.0055 8 6 1.8940 -2.5753 0.0159 9 1 1.1265 -2.7380 -0.7409 10 6 1.3567 -2.9406 1.3757 11 1 1.9804 -2.8296 2.2504 12 6 0.0690 -3.4165 1.5031 13 7 -0.6406 -3.6889 0.4298 14 14 -0.6677 -3.6746 3.2002 15 1 -1.3494 -2.4301 3.6384 16 1 -1.6514 -4.7858 3.1491 17 1 0.4117 -4.0126 4.1623 18 6 3.1289 -3.4286 -0.3027 19 6 2.9132 -4.9115 -0.5950 20 6 3.2789 -3.9521 -1.7301 21 6 4.4012 -3.0217 0.4468 22 6 4.8225 -1.6179 -0.0031 23 1 -0.3633 -0.0759 1.0248 24 1 -0.3633 0.9256 -0.4467 25 1 -0.3634 -0.8495 -0.5782 26 1 5.0889 1.7110 -1.0311 27 1 5.6124 0.9973 0.5133 28 1 4.5605 2.4331 0.5077 29 1 -1.5696 -3.9538 0.5170 30 1 3.6809 -5.6079 -0.2576 31 1 1.8906 -5.2872 -0.5634 32 1 2.4968 -3.6964 -2.4449 33 1 4.2872 -4.0172 -2.1391 34 1 5.1983 -3.7305 0.2228 35 1 4.2066 -3.0175 1.5192 36 1 5.2370 -1.6672 -1.0100 37 1 5.5745 -1.2256 0.6814 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260507408.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:08:29 Heat of formation + Delta-G solvation = 88.471134 kcal Electronic energy + Delta-G solvation = -18623.362831 eV Core-core repulsion = 15981.519359 eV Total energy + Delta-G solvation = -2641.843472 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.64249 -37.53103 -33.77035 -32.64355 -32.21000 -29.14108 -28.81783 -26.99789 -24.63638 -23.66789 -22.22851 -21.31884 -19.53949 -18.66854 -17.24137 -15.94097 -15.81116 -15.12414 -14.55886 -14.28294 -13.41527 -13.32206 -12.95458 -12.82832 -12.53387 -12.27177 -12.04353 -11.86537 -11.40512 -11.30335 -11.14438 -10.97618 -10.83190 -10.67248 -10.56010 -10.23838 -9.80124 -9.63511 -9.09330 -8.95911 -8.51851 -8.31654 -8.17215 -7.13056 -5.94594 -3.96330 2.67866 3.23844 3.34199 3.41392 3.44402 3.84639 4.48861 4.85116 5.05216 5.20620 5.35988 5.41204 5.50677 5.62066 5.70402 5.80911 5.85272 5.89493 6.01415 6.19541 6.27974 6.31312 6.44820 6.56550 6.62023 6.72150 6.78487 6.81845 6.97361 7.05891 7.21421 7.24022 7.60304 7.75642 7.82600 7.93799 8.01954 8.49672 8.66143 9.11672 9.64734 11.10949 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.019376 B = 0.010641 C = 0.008224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.758820 B = 2630.687330 C = 3404.031502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C 0.087 3.913 3 N -0.324 5.324 4 N -0.390 5.390 5 C 0.112 3.888 6 C 0.045 3.955 7 C -0.168 4.168 8 C 0.135 3.865 9 H 0.078 0.922 10 C -0.483 4.483 11 H 0.050 0.950 12 C 0.071 3.929 13 N -0.891 5.891 14 Si 0.880 3.120 15 H -0.281 1.281 16 H -0.288 1.288 17 H -0.276 1.276 18 C -0.092 4.092 19 C -0.161 4.161 20 C -0.197 4.197 21 C -0.071 4.071 22 C -0.039 4.039 23 H 0.071 0.929 24 H 0.050 0.950 25 H 0.086 0.914 26 H 0.061 0.939 27 H 0.075 0.925 28 H 0.078 0.922 29 H 0.260 0.740 30 H 0.072 0.928 31 H 0.099 0.901 32 H 0.084 0.916 33 H 0.072 0.928 34 H 0.054 0.946 35 H 0.071 0.929 36 H 0.068 0.932 37 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.805 3.737 -2.134 9.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.078 4.078 3 N -0.148 5.148 4 N -0.174 5.174 5 C -0.031 4.031 6 C -0.079 4.079 7 C -0.179 4.179 8 C 0.115 3.885 9 H 0.096 0.904 10 C -0.521 4.521 11 H 0.068 0.932 12 C -0.130 4.130 13 N -0.529 5.529 14 Si 0.708 3.292 15 H -0.207 1.207 16 H -0.214 1.214 17 H -0.201 1.201 18 C -0.092 4.092 19 C -0.198 4.198 20 C -0.234 4.234 21 C -0.108 4.108 22 C -0.078 4.078 23 H 0.090 0.910 24 H 0.069 0.931 25 H 0.104 0.896 26 H 0.080 0.920 27 H 0.094 0.906 28 H 0.097 0.903 29 H 0.070 0.930 30 H 0.091 0.909 31 H 0.118 0.882 32 H 0.102 0.898 33 H 0.090 0.910 34 H 0.072 0.928 35 H 0.090 0.910 36 H 0.087 0.913 37 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 8.814 4.964 -2.187 10.349 hybrid contribution -0.285 -0.848 1.026 1.361 sum 8.529 4.116 -1.161 9.541 Atomic orbital electron populations 1.20033 0.87094 1.01722 1.02942 1.21998 0.96614 0.90427 0.98743 1.77200 0.86111 1.22934 1.28571 1.47950 1.04908 1.04036 1.60546 1.21545 0.84766 0.94747 1.02014 1.20737 0.97292 0.83577 1.06299 1.20696 0.89792 0.98759 1.08640 1.17213 0.90384 0.82695 0.98168 0.90393 1.20859 0.98032 1.40974 0.92283 0.93206 1.24846 0.97511 0.94630 0.96008 1.69900 1.08698 1.46638 1.27705 0.86787 0.79164 0.77726 0.85548 1.20733 1.21411 1.20052 1.21739 0.97408 0.96056 0.94012 1.22700 1.02086 0.92922 1.02088 1.22954 1.00450 1.07273 0.92724 1.20992 0.95617 0.93457 1.00776 1.20038 0.92778 0.94179 1.00821 0.91047 0.93117 0.89551 0.92026 0.90591 0.90345 0.92980 0.90942 0.88222 0.89761 0.90965 0.92761 0.91004 0.91331 0.92034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.24 10.28 36.00 0.37 -0.87 16 2 C 0.09 1.98 7.22 -82.52 -0.60 1.38 16 3 N -0.32 -7.10 12.59 33.60 0.42 -6.67 16 4 N -0.39 -7.51 4.01 -63.86 -0.26 -7.76 16 5 C 0.11 1.48 11.29 59.85 0.68 2.16 16 6 C 0.05 0.91 6.72 -82.28 -0.55 0.36 16 7 C -0.17 -3.87 5.20 -104.98 -0.55 -4.42 16 8 C 0.13 3.24 2.38 -92.51 -0.22 3.02 16 9 H 0.08 2.09 6.87 -51.93 -0.36 1.74 16 10 C -0.48 -12.64 8.08 -34.44 -0.28 -12.92 16 11 H 0.05 1.35 7.64 -52.49 -0.40 0.95 16 12 C 0.07 1.88 5.45 -17.82 -0.10 1.78 16 13 N -0.89 -24.05 12.64 55.43 0.70 -23.35 16 14 Si 0.88 20.86 29.55 -169.99 -5.02 15.84 16 15 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 16 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 17 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 18 C -0.09 -1.90 1.27 -154.47 -0.20 -2.09 16 19 C -0.16 -3.22 9.88 -26.87 -0.27 -3.48 16 20 C -0.20 -3.70 9.93 -26.82 -0.27 -3.97 16 21 C -0.07 -1.26 5.59 -26.49 -0.15 -1.41 16 22 C -0.04 -0.65 5.86 -27.69 -0.16 -0.81 16 23 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16 24 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 25 H 0.09 1.91 8.14 -51.93 -0.42 1.49 16 26 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.08 0.83 7.42 -51.93 -0.39 0.44 16 28 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 29 H 0.26 6.79 8.32 -40.82 -0.34 6.45 16 30 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 31 H 0.10 2.25 8.14 -51.93 -0.42 1.82 16 32 H 0.08 1.65 8.14 -51.93 -0.42 1.23 16 33 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 34 H 0.05 0.84 8.11 -51.93 -0.42 0.42 16 35 H 0.07 1.39 7.85 -51.93 -0.41 0.98 16 36 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.06 0.86 7.59 -51.93 -0.39 0.47 16 LS Contribution 304.44 15.07 4.59 4.59 Total: -1.00 -29.25 304.44 -7.58 -36.82 By element: Atomic # 1 Polarization: 7.52 SS G_CDS: -5.73 Total: 1.79 kcal Atomic # 6 Polarization: -18.98 SS G_CDS: -2.28 Total: -21.26 kcal Atomic # 7 Polarization: -38.65 SS G_CDS: 0.87 Total: -37.79 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -29.25 -7.58 -36.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260507408.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.295 kcal (2) G-P(sol) polarization free energy of solvation -29.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.824 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds