Wall clock time and date at job start Mon Mar 30 2020 06:08:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.31017 * 125.98476 * 2 1 4 4 N 1.40208 * 108.26049 * 180.12242 * 3 2 1 5 5 C 1.46507 * 126.05177 * 180.02562 * 4 3 2 6 6 C 1.34651 * 107.90176 * 359.73415 * 4 3 2 7 7 C 1.35576 * 107.62818 * 0.05465 * 6 4 3 8 8 C 1.51056 * 124.41401 * 180.22291 * 7 6 4 9 9 H 1.09004 * 109.84749 * 227.72796 * 8 7 6 10 10 C 1.50709 * 109.90046 * 106.77798 * 8 7 6 11 11 H 1.07999 * 119.99712 * 301.72588 * 10 8 7 12 12 C 1.37874 * 119.99830 * 121.72026 * 10 8 7 13 13 N 1.31510 * 120.00168 * 7.36197 * 12 10 8 14 14 Si 1.86802 * 119.99598 * 187.35683 * 12 10 8 15 15 H 1.48505 * 109.47007 * 90.00572 * 14 12 10 16 16 H 1.48495 * 109.47176 * 209.99870 * 14 12 10 17 17 H 1.48501 * 109.47435 * 330.00794 * 14 12 10 18 18 C 1.53455 * 107.54351 * 347.23960 * 8 7 6 19 19 C 1.52679 * 117.78504 * 190.55433 * 18 8 7 20 20 C 1.52777 * 117.61405 * 259.48642 * 18 8 7 21 21 C 1.53161 * 114.78165 * 44.73011 * 18 8 7 22 22 C 1.50761 * 127.05342 * 179.83204 * 6 4 3 23 23 H 1.08997 * 109.47226 * 265.76413 * 1 2 3 24 24 H 1.09007 * 109.46914 * 25.76495 * 1 2 3 25 25 H 1.08996 * 109.47534 * 145.76239 * 1 2 3 26 26 H 1.09001 * 109.46666 * 269.69110 * 5 4 3 27 27 H 1.08999 * 109.47431 * 149.68675 * 5 4 3 28 28 H 1.09001 * 109.46619 * 29.68812 * 5 4 3 29 29 H 0.97001 * 119.99737 * 185.02367 * 13 12 10 30 30 H 1.09001 * 117.49948 * 215.03511 * 19 18 8 31 31 H 1.08994 * 117.50366 * 0.07598 * 19 18 8 32 32 H 1.08997 * 117.50930 * 359.62543 * 20 18 8 33 33 H 1.09000 * 117.50608 * 144.70175 * 20 18 8 34 34 H 1.08999 * 109.52086 * 175.25744 * 21 18 8 35 35 H 1.08993 * 109.52370 * 55.05698 * 21 18 8 36 36 H 1.09007 * 109.51585 * 282.11026 * 22 6 4 37 37 H 1.08993 * 109.51494 * 42.21606 * 22 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2768 1.0602 0.0000 4 7 3.6123 0.6333 -0.0028 5 6 4.7942 1.4991 -0.0033 6 6 3.6165 -0.7132 0.0014 7 6 2.3257 -1.1278 0.0055 8 6 1.8940 -2.5753 0.0159 9 1 1.1265 -2.7380 -0.7409 10 6 1.3567 -2.9406 1.3757 11 1 1.9804 -2.8296 2.2504 12 6 0.0690 -3.4165 1.5031 13 7 -0.6406 -3.6889 0.4298 14 14 -0.6677 -3.6746 3.2002 15 1 -1.3494 -2.4301 3.6384 16 1 -1.6514 -4.7858 3.1491 17 1 0.4117 -4.0126 4.1623 18 6 3.1289 -3.4286 -0.3027 19 6 2.9132 -4.9115 -0.5950 20 6 3.2789 -3.9521 -1.7301 21 6 4.4012 -3.0217 0.4468 22 6 4.8225 -1.6179 -0.0031 23 1 -0.3633 -0.0759 1.0248 24 1 -0.3633 0.9256 -0.4467 25 1 -0.3634 -0.8495 -0.5782 26 1 5.0889 1.7110 -1.0311 27 1 5.6124 0.9973 0.5133 28 1 4.5605 2.4331 0.5077 29 1 -1.5696 -3.9538 0.5170 30 1 3.6809 -5.6079 -0.2576 31 1 1.8906 -5.2872 -0.5634 32 1 2.4968 -3.6964 -2.4449 33 1 4.2872 -4.0172 -2.1391 34 1 5.1983 -3.7305 0.2228 35 1 4.2066 -3.0175 1.5192 36 1 5.2370 -1.6672 -1.0100 37 1 5.5745 -1.2256 0.6814 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260507408.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:08:29 Heat of formation + Delta-G solvation = 72.546831 kcal Electronic energy + Delta-G solvation = -18624.053360 eV Core-core repulsion = 15981.519359 eV Total energy + Delta-G solvation = -2642.534002 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.20923 -39.09934 -35.36410 -34.42812 -33.74207 -30.83356 -30.29340 -28.64794 -26.31085 -25.17270 -23.85271 -22.88365 -21.07256 -20.28076 -18.94893 -17.81978 -17.28973 -16.56361 -16.36917 -15.86750 -14.87636 -14.77261 -14.43234 -14.37945 -14.15992 -13.81526 -13.55840 -13.36815 -13.05098 -12.87914 -12.75253 -12.71177 -12.59671 -12.22521 -12.12412 -11.92101 -11.65822 -11.26018 -10.85860 -10.66837 -10.33011 -10.05375 -9.71090 -8.80607 -7.94646 -6.02605 1.11256 1.41039 1.44319 1.51088 1.88401 2.12955 2.52150 3.24034 3.37196 3.79727 3.86696 4.11065 4.27451 4.34572 4.40537 4.44502 4.49655 4.55598 4.67598 4.70424 4.86453 4.90966 4.92228 4.97312 5.05468 5.13322 5.19682 5.29413 5.39542 5.49346 5.57483 5.60266 5.78750 5.95978 6.03834 6.09930 6.47810 6.54981 7.01213 7.11757 7.59280 9.07924 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.019376 B = 0.010641 C = 0.008224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.758820 B = 2630.687330 C = 3404.031502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 C 0.059 3.941 3 N -0.343 5.343 4 N -0.383 5.383 5 C 0.097 3.903 6 C 0.059 3.941 7 C -0.215 4.215 8 C 0.140 3.860 9 H 0.034 0.966 10 C -0.486 4.486 11 H 0.036 0.964 12 C 0.031 3.969 13 N -0.916 5.916 14 Si 0.927 3.073 15 H -0.281 1.281 16 H -0.286 1.286 17 H -0.273 1.273 18 C -0.109 4.109 19 C -0.168 4.168 20 C -0.175 4.175 21 C -0.066 4.066 22 C -0.036 4.036 23 H 0.059 0.941 24 H 0.072 0.928 25 H 0.063 0.937 26 H 0.084 0.916 27 H 0.108 0.892 28 H 0.087 0.913 29 H 0.258 0.742 30 H 0.100 0.900 31 H 0.060 0.940 32 H 0.065 0.935 33 H 0.110 0.890 34 H 0.090 0.910 35 H 0.051 0.949 36 H 0.096 0.904 37 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.224 4.360 -2.099 13.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.104 4.104 3 N -0.168 5.168 4 N -0.166 5.166 5 C -0.042 4.042 6 C -0.068 4.068 7 C -0.226 4.226 8 C 0.121 3.879 9 H 0.052 0.948 10 C -0.524 4.524 11 H 0.054 0.946 12 C -0.168 4.168 13 N -0.556 5.556 14 Si 0.754 3.246 15 H -0.208 1.208 16 H -0.212 1.212 17 H -0.198 1.198 18 C -0.109 4.109 19 C -0.205 4.205 20 C -0.212 4.212 21 C -0.103 4.103 22 C -0.074 4.074 23 H 0.078 0.922 24 H 0.091 0.909 25 H 0.082 0.918 26 H 0.103 0.897 27 H 0.127 0.873 28 H 0.106 0.894 29 H 0.067 0.933 30 H 0.119 0.881 31 H 0.079 0.921 32 H 0.083 0.917 33 H 0.129 0.871 34 H 0.108 0.892 35 H 0.070 0.930 36 H 0.114 0.886 37 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 12.242 5.611 -2.147 13.637 hybrid contribution -1.268 -0.969 0.982 1.874 sum 10.974 4.642 -1.166 11.972 Atomic orbital electron populations 1.19875 0.87177 1.01815 1.01901 1.22177 0.97177 0.91075 0.99999 1.77104 0.87611 1.22781 1.29302 1.48416 1.05341 1.04555 1.58309 1.22070 0.83269 0.94696 1.04209 1.21264 0.97640 0.84480 1.03405 1.20713 0.91658 0.98117 1.12126 1.16904 0.90946 0.84591 0.95498 0.94788 1.21022 0.98028 1.40292 0.93054 0.94607 1.25368 0.98000 0.95000 0.98384 1.70015 1.08659 1.47889 1.29008 0.86041 0.78492 0.77466 0.82602 1.20757 1.21218 1.19791 1.21708 0.97597 0.95572 0.96064 1.22642 1.00874 0.93386 1.03583 1.22943 1.01765 1.05096 0.91424 1.20981 0.94935 0.95401 0.99021 1.20221 0.91675 0.92210 1.03307 0.92238 0.90896 0.91805 0.89730 0.87320 0.89432 0.93268 0.88138 0.92105 0.91653 0.87131 0.89153 0.93041 0.88624 0.88380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -2.15 10.28 71.24 0.73 -1.42 16 2 C 0.06 2.74 7.22 42.95 0.31 3.05 16 3 N -0.34 -14.76 12.59 -47.61 -0.60 -15.36 16 4 N -0.38 -13.68 4.01 -355.96 -1.43 -15.10 16 5 C 0.10 2.15 11.29 127.77 1.44 3.59 16 6 C 0.06 2.25 6.72 41.53 0.28 2.53 16 7 C -0.22 -9.99 5.20 -20.10 -0.10 -10.09 16 8 C 0.14 6.94 2.38 -12.02 -0.03 6.92 16 9 H 0.03 1.94 6.87 -2.38 -0.02 1.93 16 10 C -0.49 -26.29 8.08 25.60 0.21 -26.08 16 11 H 0.04 1.99 7.64 -2.91 -0.02 1.97 16 12 C 0.03 1.69 5.45 84.65 0.46 2.15 16 13 N -0.92 -52.09 12.64 21.45 0.27 -51.82 16 14 Si 0.93 44.04 29.55 68.60 2.03 46.06 16 15 H -0.28 -13.27 7.11 99.48 0.71 -12.57 16 16 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 17 H -0.27 -12.75 7.11 99.48 0.71 -12.04 16 18 C -0.11 -4.41 1.27 -52.16 -0.07 -4.47 16 19 C -0.17 -6.62 9.88 30.51 0.30 -6.32 16 20 C -0.18 -6.29 9.93 30.54 0.30 -5.99 16 21 C -0.07 -2.13 5.59 30.75 0.17 -1.95 16 22 C -0.04 -1.00 5.86 29.97 0.18 -0.82 16 23 H 0.06 2.68 8.14 -2.39 -0.02 2.66 16 24 H 0.07 2.76 8.14 -2.38 -0.02 2.74 16 25 H 0.06 3.04 8.14 -2.39 -0.02 3.02 16 26 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 27 H 0.11 1.72 7.42 -2.39 -0.02 1.70 16 28 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 29 H 0.26 14.14 8.32 -92.71 -0.77 13.37 16 30 H 0.10 3.34 8.14 -2.39 -0.02 3.33 16 31 H 0.06 2.86 8.14 -2.39 -0.02 2.84 16 32 H 0.06 2.57 8.14 -2.39 -0.02 2.56 16 33 H 0.11 3.13 8.14 -2.39 -0.02 3.11 16 34 H 0.09 2.30 8.11 -2.39 -0.02 2.28 16 35 H 0.05 1.87 7.85 -2.39 -0.02 1.85 16 36 H 0.10 2.27 8.14 -2.38 -0.02 2.25 16 37 H 0.10 2.11 7.59 -2.39 -0.02 2.09 16 Total: -1.00 -66.94 304.44 5.50 -61.44 By element: Atomic # 1 Polarization: 12.66 SS G_CDS: 1.04 Total: 13.71 kcal Atomic # 6 Polarization: -43.12 SS G_CDS: 4.19 Total: -38.93 kcal Atomic # 7 Polarization: -80.52 SS G_CDS: -1.75 Total: -82.28 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.06 kcal Total: -66.94 5.50 -61.44 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260507408.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.985 kcal (2) G-P(sol) polarization free energy of solvation -66.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.438 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds