Wall clock time and date at job start Mon Mar 30 2020 05:48:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.47032 * 2 1 4 4 C 1.50700 * 109.47184 * 239.99987 * 2 1 3 5 5 H 1.07999 * 120.00016 * 240.00470 * 4 2 1 6 6 C 1.37870 * 120.00047 * 59.99492 * 4 2 1 7 7 N 1.31510 * 120.00382 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00260 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.46825 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.47265 * 120.00218 * 8 6 4 11 11 H 1.48497 * 109.47683 * 240.00669 * 8 6 4 12 12 C 1.50701 * 109.47247 * 119.99753 * 2 1 3 13 13 C 1.38263 * 119.99857 * 65.32439 * 12 2 1 14 14 C 1.38209 * 119.99865 * 179.72329 * 13 12 2 15 15 C 1.38264 * 120.00138 * 0.51275 * 14 13 12 16 16 C 1.38209 * 119.99580 * 359.48729 * 15 14 13 17 17 C 1.38208 * 120.00326 * 245.30633 * 12 2 1 18 18 C 1.50701 * 119.99682 * 0.02562 * 17 12 2 19 19 H 1.08991 * 110.46012 * 351.57326 * 18 17 12 20 20 C 1.54502 * 110.51270 * 114.18171 * 18 17 12 21 21 C 1.54489 * 104.06667 * 118.64157 * 20 18 17 22 22 O 1.44429 * 104.79958 * 23.97958 * 21 20 18 23 23 C 1.44422 * 105.27377 * 319.48971 * 22 21 20 24 24 H 1.08995 * 109.46824 * 300.00195 * 1 2 3 25 25 H 1.09001 * 109.46872 * 60.00159 * 1 2 3 26 26 H 1.09001 * 109.47032 * 180.02562 * 1 2 3 27 27 H 0.96995 * 120.01043 * 179.97438 * 7 6 4 28 28 H 1.08003 * 119.99589 * 0.02562 * 13 12 2 29 29 H 1.08003 * 119.99921 * 180.28092 * 14 13 12 30 30 H 1.07992 * 119.99780 * 179.76826 * 15 14 13 31 31 H 1.07999 * 119.99762 * 180.27569 * 16 15 14 32 32 H 1.08995 * 110.51570 * 237.28571 * 20 18 17 33 33 H 1.09001 * 110.51360 * 359.86469 * 20 18 17 34 34 H 1.08996 * 110.37483 * 142.80805 * 21 20 18 35 35 H 1.08998 * 110.37031 * 265.14897 * 21 20 18 36 36 H 1.09009 * 110.37068 * 281.68300 * 23 22 21 37 37 H 1.08998 * 110.37617 * 159.34838 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8300 -2.6034 8 14 2.3213 -1.1204 -4.0079 9 1 3.1455 -2.2878 -3.6037 10 1 1.1660 -1.5868 -4.8160 11 1 3.1466 -0.1876 -4.8165 12 6 2.0324 -0.7104 1.2305 13 6 1.7915 -2.0618 1.3953 14 6 2.2572 -2.7145 2.5210 15 6 2.9547 -2.0138 3.4875 16 6 3.1955 -0.6628 3.3228 17 6 2.7342 -0.0110 2.1941 18 6 2.9966 1.4621 2.0146 19 1 2.7003 1.7829 1.0160 20 6 2.2481 2.2804 3.0903 21 6 3.3742 2.9974 3.8677 22 8 4.4803 3.0599 2.9410 23 6 4.4864 1.7815 2.2692 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 0.7094 1.1617 -3.4843 28 1 1.2437 -2.6084 0.6419 29 1 2.0730 -3.7712 2.6476 30 1 3.3153 -2.5231 4.3689 31 1 3.7442 -0.1164 4.0756 32 1 1.5836 3.0074 2.6236 33 1 1.6863 1.6196 3.7506 34 1 3.0596 4.0017 4.1513 35 1 3.6513 2.4220 4.7510 36 1 4.9342 1.0196 2.9074 37 1 5.0262 1.8517 1.3248 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260535072.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:48:25 Heat of formation + Delta-G solvation = -32.873848 kcal Electronic energy + Delta-G solvation = -18132.834952 eV Core-core repulsion = 15453.436816 eV Total energy + Delta-G solvation = -2679.398137 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.85589 -38.07559 -34.43798 -32.96272 -31.40730 -29.78228 -28.44315 -27.64284 -25.15076 -23.35218 -22.46573 -21.98312 -19.94707 -19.21890 -16.54258 -16.38946 -15.96999 -15.23387 -14.93416 -14.56517 -14.29520 -13.80519 -13.03067 -12.90690 -12.63951 -12.54367 -12.36337 -11.62512 -11.51999 -11.22322 -11.17841 -11.01189 -10.92238 -10.78162 -10.44444 -10.40184 -10.26920 -9.94119 -9.57458 -9.31346 -8.90709 -8.35561 -8.12924 -7.75568 -6.04085 -4.10246 1.97329 2.12344 3.26859 3.35485 3.39556 4.20381 4.35369 4.46181 5.03530 5.08452 5.21354 5.27651 5.35488 5.42038 5.52053 5.58919 5.64114 5.87459 5.87895 6.03991 6.08088 6.13543 6.26331 6.29479 6.47564 6.66248 6.74819 6.82057 6.97508 7.00347 7.09778 7.19655 7.25516 7.33761 7.68204 7.73531 7.96201 8.06467 8.37194 8.92336 9.54409 11.01579 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.020505 B = 0.007936 C = 0.006654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.200617 B = 3527.294605 C = 4207.036142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.064 3.936 3 H 0.045 0.955 4 C -0.507 4.507 5 H 0.058 0.942 6 C 0.062 3.938 7 N -0.889 5.889 8 Si 0.890 3.110 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.284 1.284 12 C -0.025 4.025 13 C -0.109 4.109 14 C -0.129 4.129 15 C -0.147 4.147 16 C -0.122 4.122 17 C -0.090 4.090 18 C -0.088 4.088 19 H 0.113 0.887 20 C -0.145 4.145 21 C 0.046 3.954 22 O -0.380 6.380 23 C 0.052 3.948 24 H 0.007 0.993 25 H 0.085 0.915 26 H 0.027 0.973 27 H 0.260 0.740 28 H 0.122 0.878 29 H 0.110 0.890 30 H 0.108 0.892 31 H 0.108 0.892 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.086 0.914 35 H 0.054 0.946 36 H 0.060 0.940 37 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.502 -0.289 11.138 11.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.047 3.953 3 H 0.062 0.938 4 C -0.545 4.545 5 H 0.076 0.924 6 C -0.139 4.139 7 N -0.528 5.528 8 Si 0.718 3.282 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.210 1.210 12 C -0.025 4.025 13 C -0.127 4.127 14 C -0.147 4.147 15 C -0.166 4.166 16 C -0.140 4.140 17 C -0.090 4.090 18 C -0.106 4.106 19 H 0.130 0.870 20 C -0.182 4.182 21 C -0.031 4.031 22 O -0.299 6.299 23 C -0.024 4.024 24 H 0.026 0.974 25 H 0.104 0.896 26 H 0.046 0.954 27 H 0.070 0.930 28 H 0.140 0.860 29 H 0.128 0.872 30 H 0.126 0.874 31 H 0.126 0.874 32 H 0.094 0.906 33 H 0.095 0.905 34 H 0.105 0.895 35 H 0.072 0.928 36 H 0.078 0.922 37 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 2.572 0.005 10.964 11.262 hybrid contribution 0.139 -0.791 -0.833 1.158 sum 2.711 -0.786 10.131 10.517 Atomic orbital electron populations 1.21770 0.97603 0.99262 1.00212 1.18045 0.92821 0.95886 0.88590 0.93780 1.21171 1.31078 1.12392 0.89878 0.92418 1.24946 0.95040 0.94999 0.98922 1.69879 1.36707 1.22855 1.23345 0.86555 0.78673 0.79788 0.83151 1.19768 1.21026 1.21001 1.20527 0.92924 0.93685 0.95359 1.21090 0.99972 0.94718 0.96877 1.21073 0.99513 0.99110 0.95016 1.20826 1.01907 0.94462 0.99363 1.20783 1.01130 0.94588 0.97486 1.19514 1.00241 0.94306 0.94923 1.21673 0.94827 0.92211 1.01924 0.86967 1.23003 0.98316 0.99236 0.97686 1.23400 0.86488 1.00778 0.92464 1.89083 1.50730 1.35110 1.54974 1.23615 0.96248 0.85109 0.97463 0.97358 0.89594 0.95368 0.92983 0.86005 0.87237 0.87360 0.87383 0.90561 0.90529 0.89528 0.92781 0.92185 0.88871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.08 8.83 37.16 0.33 -2.76 16 2 C 0.06 1.55 2.33 -92.92 -0.22 1.33 16 3 H 0.04 1.13 5.15 -51.93 -0.27 0.86 16 4 C -0.51 -13.45 8.10 -34.44 -0.28 -13.73 16 5 H 0.06 1.54 7.44 -52.49 -0.39 1.15 16 6 C 0.06 1.67 5.30 -17.82 -0.09 1.58 16 7 N -0.89 -24.67 11.32 55.43 0.63 -24.04 16 8 Si 0.89 20.96 29.54 -169.99 -5.02 15.94 16 9 H -0.27 -6.39 7.11 56.52 0.40 -5.98 16 10 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 12 C -0.02 -0.52 4.75 -104.62 -0.50 -1.02 16 13 C -0.11 -2.14 8.60 -39.58 -0.34 -2.48 16 14 C -0.13 -2.16 10.05 -39.58 -0.40 -2.56 16 15 C -0.15 -2.31 10.05 -39.58 -0.40 -2.71 16 16 C -0.12 -1.98 8.48 -39.58 -0.34 -2.31 16 17 C -0.09 -1.66 4.74 -104.63 -0.50 -2.15 16 18 C -0.09 -1.53 3.16 -90.20 -0.29 -1.81 16 19 H 0.11 2.24 5.25 -51.93 -0.27 1.97 16 20 C -0.14 -2.12 6.58 -25.16 -0.17 -2.29 16 21 C 0.05 0.60 7.63 37.94 0.29 0.89 16 22 O -0.38 -6.11 11.65 -35.23 -0.41 -6.52 16 23 C 0.05 0.83 7.05 37.94 0.27 1.10 16 24 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 25 H 0.09 2.22 6.07 -51.93 -0.32 1.91 16 26 H 0.03 0.63 7.72 -51.93 -0.40 0.23 16 27 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 28 H 0.12 2.45 7.76 -52.48 -0.41 2.04 16 29 H 0.11 1.55 8.06 -52.48 -0.42 1.13 16 30 H 0.11 1.39 8.06 -52.49 -0.42 0.97 16 31 H 0.11 1.52 7.20 -52.49 -0.38 1.14 16 32 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.08 1.08 7.58 -51.93 -0.39 0.69 16 34 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 35 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.06 0.89 6.35 -51.92 -0.33 0.56 16 37 H 0.09 1.49 8.14 -51.93 -0.42 1.06 16 LS Contribution 295.13 15.07 4.45 4.45 Total: -1.00 -27.90 295.13 -8.23 -36.13 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: -5.25 Total: 2.96 kcal Atomic # 6 Polarization: -26.30 SS G_CDS: -2.62 Total: -28.92 kcal Atomic # 7 Polarization: -24.67 SS G_CDS: 0.63 Total: -24.04 kcal Atomic # 8 Polarization: -6.11 SS G_CDS: -0.41 Total: -6.52 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -27.90 -8.23 -36.13 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260535072.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.252 kcal (2) G-P(sol) polarization free energy of solvation -27.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds