Wall clock time and date at job start Mon Mar 30 2020 05:48:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09008 * 109.46993 * 2 1 4 4 C 1.50691 * 109.47368 * 120.00059 * 2 1 3 5 5 H 1.08007 * 119.99916 * 119.99893 * 4 2 1 6 6 C 1.37875 * 120.00513 * 300.00377 * 4 2 1 7 7 N 1.31522 * 119.99708 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 120.00550 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47149 * 59.99534 * 8 6 4 10 10 H 1.48499 * 109.47250 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.46915 * 299.99805 * 8 6 4 12 12 C 1.50695 * 109.47175 * 240.00673 * 2 1 3 13 13 C 1.38267 * 119.99852 * 305.94386 * 12 2 1 14 14 C 1.38210 * 119.99826 * 180.29905 * 13 12 2 15 15 C 1.38252 * 120.00218 * 359.70011 * 14 13 12 16 16 C 1.38215 * 120.00339 * 0.02765 * 15 14 13 17 17 C 1.38214 * 120.00730 * 125.69151 * 12 2 1 18 18 C 1.50704 * 119.99528 * 359.97438 * 17 12 2 19 19 H 1.09000 * 110.82960 * 358.62818 * 18 17 12 20 20 C 1.54805 * 110.91030 * 234.97306 * 18 17 12 21 21 C 1.54096 * 104.30941 * 220.99129 * 20 18 17 22 22 O 1.43745 * 107.28961 * 357.90147 * 21 20 18 23 23 C 1.44378 * 106.97746 * 26.51970 * 22 21 20 24 24 H 1.08992 * 109.47471 * 59.99797 * 1 2 3 25 25 H 1.09000 * 109.46931 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47378 * 299.99387 * 1 2 3 27 27 H 0.96997 * 120.00073 * 179.97438 * 7 6 4 28 28 H 1.07996 * 119.99734 * 0.02562 * 13 12 2 29 29 H 1.08003 * 119.99512 * 179.72742 * 14 13 12 30 30 H 1.08007 * 120.00004 * 179.97438 * 15 14 13 31 31 H 1.07992 * 120.00478 * 179.97438 * 16 15 14 32 32 H 1.09004 * 110.48577 * 102.24142 * 20 18 17 33 33 H 1.09002 * 110.48559 * 339.73349 * 20 18 17 34 34 H 1.08997 * 109.88048 * 117.32645 * 21 20 18 35 35 H 1.08997 * 109.87746 * 238.48420 * 21 20 18 36 36 H 1.08993 * 110.62367 * 78.43372 * 23 22 21 37 37 H 1.09002 * 110.61955 * 201.28302 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1312 6 6 1.6993 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3226 -1.1196 4.0078 9 1 3.8076 -1.1190 4.0076 10 1 1.8270 -0.4201 5.2204 11 1 1.8282 -2.5199 4.0080 12 6 2.0323 -0.7102 -1.2305 13 6 1.6000 -1.9928 -1.5133 14 6 2.0655 -2.6465 -2.6385 15 6 2.9585 -2.0157 -3.4847 16 6 3.3863 -0.7316 -3.2051 17 6 2.9210 -0.0778 -2.0793 18 6 3.3874 1.3225 -1.7744 19 1 2.9143 1.6998 -0.8677 20 6 3.1196 2.2669 -2.9714 21 6 4.3842 3.1435 -3.0553 22 8 5.2456 2.7553 -1.9720 23 6 4.9341 1.3811 -1.6573 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5137 0.8900 27 1 0.7088 1.1612 3.4844 28 1 0.9021 -2.4854 -0.8525 29 1 1.7312 -3.6500 -2.8570 30 1 3.3226 -2.5268 -4.3638 31 1 4.0842 -0.2390 -3.8658 32 1 2.2403 2.8828 -2.7822 33 1 2.9918 1.6928 -3.8891 34 1 4.8880 2.9771 -4.0074 35 1 4.1138 4.1946 -2.9554 36 1 5.3976 0.7076 -2.3780 37 1 5.2547 1.1372 -0.6444 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260535076.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:48:26 Heat of formation + Delta-G solvation = -33.136718 kcal Electronic energy + Delta-G solvation = -18126.815895 eV Core-core repulsion = 15447.406359 eV Total energy + Delta-G solvation = -2679.409536 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.78236 -38.10122 -34.43481 -32.97075 -31.44087 -29.79964 -28.43228 -27.63367 -25.15333 -23.23429 -22.55248 -21.89568 -19.91130 -19.29870 -16.57922 -16.38767 -15.96480 -15.15219 -14.91565 -14.56026 -14.24025 -13.74370 -13.19000 -12.87059 -12.73081 -12.54490 -12.29499 -11.72634 -11.48214 -11.21189 -11.17851 -10.95125 -10.92582 -10.79231 -10.52459 -10.32646 -10.25150 -9.88186 -9.46813 -9.33304 -8.95767 -8.34301 -8.13172 -7.74882 -6.03150 -4.09753 1.96363 2.12086 3.30251 3.35048 3.38080 4.20114 4.35319 4.47305 4.99450 5.07543 5.26126 5.29133 5.36970 5.43899 5.52633 5.58881 5.64071 5.89632 5.90854 6.03805 6.08805 6.11705 6.24832 6.30445 6.47770 6.65830 6.74558 6.83269 7.00501 7.03305 7.12439 7.17243 7.26497 7.34891 7.67864 7.73525 7.96936 8.06690 8.36841 8.92286 9.54737 11.02233 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.018459 B = 0.008494 C = 0.006859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.489555 B = 3295.811743 C = 4081.124416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.065 3.935 3 H 0.045 0.955 4 C -0.507 4.507 5 H 0.056 0.944 6 C 0.063 3.937 7 N -0.889 5.889 8 Si 0.892 3.108 9 H -0.277 1.277 10 H -0.287 1.287 11 H -0.277 1.277 12 C -0.023 4.023 13 C -0.112 4.112 14 C -0.128 4.128 15 C -0.148 4.148 16 C -0.120 4.120 17 C -0.087 4.087 18 C -0.086 4.086 19 H 0.115 0.885 20 C -0.149 4.149 21 C 0.048 3.952 22 O -0.382 6.382 23 C 0.057 3.943 24 H 0.007 0.993 25 H 0.028 0.972 26 H 0.085 0.915 27 H 0.261 0.739 28 H 0.121 0.879 29 H 0.110 0.890 30 H 0.108 0.892 31 H 0.109 0.891 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.052 0.948 35 H 0.079 0.921 36 H 0.057 0.943 37 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.306 -0.207 -10.811 11.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.047 3.953 3 H 0.062 0.938 4 C -0.545 4.545 5 H 0.074 0.926 6 C -0.138 4.138 7 N -0.528 5.528 8 Si 0.719 3.281 9 H -0.202 1.202 10 H -0.213 1.213 11 H -0.203 1.203 12 C -0.023 4.023 13 C -0.130 4.130 14 C -0.146 4.146 15 C -0.166 4.166 16 C -0.138 4.138 17 C -0.087 4.087 18 C -0.104 4.104 19 H 0.133 0.867 20 C -0.187 4.187 21 C -0.029 4.029 22 O -0.301 6.301 23 C -0.019 4.019 24 H 0.026 0.974 25 H 0.047 0.953 26 H 0.104 0.896 27 H 0.071 0.929 28 H 0.139 0.861 29 H 0.128 0.872 30 H 0.127 0.873 31 H 0.127 0.873 32 H 0.095 0.905 33 H 0.093 0.907 34 H 0.070 0.930 35 H 0.098 0.902 36 H 0.075 0.925 37 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 3.383 0.053 -10.568 11.096 hybrid contribution 0.125 -0.744 0.696 1.026 sum 3.509 -0.692 -9.872 10.500 Atomic orbital electron populations 1.21807 0.97789 0.99278 1.00228 1.18040 0.92826 0.95845 0.88579 0.93779 1.21024 1.31301 1.12383 0.89761 0.92623 1.24939 0.95024 0.94981 0.98875 1.69867 1.36545 1.22777 1.23570 0.86659 0.79301 0.79764 0.82327 1.20227 1.21272 1.20301 1.20529 0.92637 0.93788 0.95356 1.21070 1.00401 0.95003 0.96529 1.21060 0.98487 0.99320 0.95705 1.20822 1.00195 0.95548 1.00068 1.20785 1.00534 0.95150 0.97375 1.19419 0.98889 0.95039 0.95394 1.21891 0.95996 0.92550 0.99954 0.86722 1.23056 0.98515 0.98068 0.99050 1.23124 0.90161 0.99265 0.90332 1.88840 1.60172 1.28264 1.52784 1.23708 0.93878 0.82731 1.01607 0.97355 0.95292 0.89606 0.92856 0.86132 0.87227 0.87342 0.87343 0.90479 0.90736 0.92968 0.90239 0.92476 0.88486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.15 8.71 37.16 0.32 -2.82 16 2 C 0.06 1.56 2.33 -92.93 -0.22 1.35 16 3 H 0.04 1.13 5.16 -51.92 -0.27 0.86 16 4 C -0.51 -13.46 8.33 -34.45 -0.29 -13.74 16 5 H 0.06 1.49 7.73 -52.48 -0.41 1.09 16 6 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 7 N -0.89 -24.69 11.32 55.43 0.63 -24.07 16 8 Si 0.89 21.04 29.54 -169.99 -5.02 16.02 16 9 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 10 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 12 C -0.02 -0.49 4.73 -104.62 -0.49 -0.98 16 13 C -0.11 -2.19 8.93 -39.58 -0.35 -2.55 16 14 C -0.13 -2.13 10.05 -39.59 -0.40 -2.53 16 15 C -0.15 -2.31 10.05 -39.58 -0.40 -2.71 16 16 C -0.12 -1.95 8.13 -39.58 -0.32 -2.28 16 17 C -0.09 -1.62 4.97 -104.62 -0.52 -2.14 16 18 C -0.09 -1.51 3.18 -89.64 -0.29 -1.79 16 19 H 0.11 2.34 5.23 -51.93 -0.27 2.07 16 20 C -0.15 -2.15 6.46 -25.21 -0.16 -2.31 16 21 C 0.05 0.65 7.70 37.73 0.29 0.94 16 22 O -0.38 -6.38 11.52 -35.23 -0.41 -6.79 16 23 C 0.06 0.94 7.14 38.34 0.27 1.22 16 24 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 25 H 0.03 0.65 7.08 -51.93 -0.37 0.28 16 26 H 0.09 2.22 6.07 -51.93 -0.32 1.91 16 27 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 28 H 0.12 2.39 7.23 -52.49 -0.38 2.01 16 29 H 0.11 1.54 8.06 -52.48 -0.42 1.11 16 30 H 0.11 1.39 8.06 -52.48 -0.42 0.96 16 31 H 0.11 1.52 7.27 -52.49 -0.38 1.14 16 32 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.07 1.00 6.88 -51.93 -0.36 0.64 16 34 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.06 0.86 7.01 -51.93 -0.36 0.50 16 37 H 0.10 1.67 8.14 -51.93 -0.42 1.24 16 LS Contribution 294.50 15.07 4.44 4.44 Total: -1.00 -27.88 294.50 -8.21 -36.09 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: -5.21 Total: 3.05 kcal Atomic # 6 Polarization: -26.09 SS G_CDS: -2.64 Total: -28.73 kcal Atomic # 7 Polarization: -24.69 SS G_CDS: 0.63 Total: -24.07 kcal Atomic # 8 Polarization: -6.38 SS G_CDS: -0.41 Total: -6.79 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -27.88 -8.21 -36.09 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260535076.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.949 kcal (2) G-P(sol) polarization free energy of solvation -27.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds