Wall clock time and date at job start Mon Mar 30 2020 05:48:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09008 * 109.46993 * 2 1 4 4 C 1.50691 * 109.47368 * 120.00059 * 2 1 3 5 5 H 1.08007 * 119.99916 * 119.99893 * 4 2 1 6 6 C 1.37875 * 120.00513 * 300.00377 * 4 2 1 7 7 N 1.31522 * 119.99708 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 120.00550 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47149 * 59.99534 * 8 6 4 10 10 H 1.48499 * 109.47250 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.46915 * 299.99805 * 8 6 4 12 12 C 1.50695 * 109.47175 * 240.00673 * 2 1 3 13 13 C 1.38267 * 119.99852 * 305.94386 * 12 2 1 14 14 C 1.38210 * 119.99826 * 180.29905 * 13 12 2 15 15 C 1.38252 * 120.00218 * 359.70011 * 14 13 12 16 16 C 1.38215 * 120.00339 * 0.02765 * 15 14 13 17 17 C 1.38214 * 120.00730 * 125.69151 * 12 2 1 18 18 C 1.50704 * 119.99528 * 359.97438 * 17 12 2 19 19 H 1.09000 * 110.82960 * 358.62818 * 18 17 12 20 20 C 1.54805 * 110.91030 * 234.97306 * 18 17 12 21 21 C 1.54096 * 104.30941 * 220.99129 * 20 18 17 22 22 O 1.43745 * 107.28961 * 357.90147 * 21 20 18 23 23 C 1.44378 * 106.97746 * 26.51970 * 22 21 20 24 24 H 1.08992 * 109.47471 * 59.99797 * 1 2 3 25 25 H 1.09000 * 109.46931 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47378 * 299.99387 * 1 2 3 27 27 H 0.96997 * 120.00073 * 179.97438 * 7 6 4 28 28 H 1.07996 * 119.99734 * 0.02562 * 13 12 2 29 29 H 1.08003 * 119.99512 * 179.72742 * 14 13 12 30 30 H 1.08007 * 120.00004 * 179.97438 * 15 14 13 31 31 H 1.07992 * 120.00478 * 179.97438 * 16 15 14 32 32 H 1.09004 * 110.48577 * 102.24142 * 20 18 17 33 33 H 1.09002 * 110.48559 * 339.73349 * 20 18 17 34 34 H 1.08997 * 109.88048 * 117.32645 * 21 20 18 35 35 H 1.08997 * 109.87746 * 238.48420 * 21 20 18 36 36 H 1.08993 * 110.62367 * 78.43372 * 23 22 21 37 37 H 1.09002 * 110.61955 * 201.28302 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1312 6 6 1.6993 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3226 -1.1196 4.0078 9 1 3.8076 -1.1190 4.0076 10 1 1.8270 -0.4201 5.2204 11 1 1.8282 -2.5199 4.0080 12 6 2.0323 -0.7102 -1.2305 13 6 1.6000 -1.9928 -1.5133 14 6 2.0655 -2.6465 -2.6385 15 6 2.9585 -2.0157 -3.4847 16 6 3.3863 -0.7316 -3.2051 17 6 2.9210 -0.0778 -2.0793 18 6 3.3874 1.3225 -1.7744 19 1 2.9143 1.6998 -0.8677 20 6 3.1196 2.2669 -2.9714 21 6 4.3842 3.1435 -3.0553 22 8 5.2456 2.7553 -1.9720 23 6 4.9341 1.3811 -1.6573 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5137 0.8900 27 1 0.7088 1.1612 3.4844 28 1 0.9021 -2.4854 -0.8525 29 1 1.7312 -3.6500 -2.8570 30 1 3.3226 -2.5268 -4.3638 31 1 4.0842 -0.2390 -3.8658 32 1 2.2403 2.8828 -2.7822 33 1 2.9918 1.6928 -3.8891 34 1 4.8880 2.9771 -4.0074 35 1 4.1138 4.1946 -2.9554 36 1 5.3976 0.7076 -2.3780 37 1 5.2547 1.1372 -0.6444 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260535076.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:48:26 Heat of formation + Delta-G solvation = -47.512779 kcal Electronic energy + Delta-G solvation = -18127.439287 eV Core-core repulsion = 15447.406359 eV Total energy + Delta-G solvation = -2680.032928 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.11807 -39.42297 -36.24681 -34.30979 -33.28841 -31.00665 -29.96040 -29.01883 -27.21334 -24.65406 -24.04952 -23.09836 -21.43183 -20.76002 -18.33825 -17.88740 -17.31187 -16.73256 -16.24179 -16.13262 -15.62655 -15.15673 -14.64053 -14.41115 -14.33429 -13.85920 -13.80896 -13.35277 -13.04202 -12.86140 -12.78768 -12.61124 -12.39218 -12.29935 -12.13508 -12.10108 -11.63095 -11.57026 -11.06889 -10.86635 -10.62644 -10.35342 -9.48834 -9.21583 -8.09455 -6.22474 0.60937 0.73549 1.40101 1.40453 1.48241 2.41887 2.96265 3.07825 3.18209 3.77687 3.82391 4.06664 4.19767 4.23018 4.26567 4.34973 4.38980 4.49681 4.69652 4.76992 4.84363 4.86616 4.90506 4.94840 5.01375 5.11962 5.19533 5.24733 5.39288 5.42203 5.54896 5.69350 5.75977 5.79940 5.92808 6.06438 6.19052 6.33330 6.40908 6.85749 7.44507 8.94242 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.018459 B = 0.008494 C = 0.006859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.489555 B = 3295.811743 C = 4081.124416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.066 3.934 3 H 0.021 0.979 4 C -0.517 4.517 5 H 0.046 0.954 6 C 0.016 3.984 7 N -0.915 5.915 8 Si 0.948 3.052 9 H -0.274 1.274 10 H -0.283 1.283 11 H -0.272 1.272 12 C -0.058 4.058 13 C -0.131 4.131 14 C -0.126 4.126 15 C -0.136 4.136 16 C -0.116 4.116 17 C -0.094 4.094 18 C -0.090 4.090 19 H 0.073 0.927 20 C -0.142 4.142 21 C 0.046 3.954 22 O -0.402 6.402 23 C 0.062 3.938 24 H 0.021 0.979 25 H 0.029 0.971 26 H 0.058 0.942 27 H 0.261 0.739 28 H 0.105 0.895 29 H 0.139 0.861 30 H 0.150 0.850 31 H 0.140 0.860 32 H 0.074 0.926 33 H 0.093 0.907 34 H 0.081 0.919 35 H 0.092 0.908 36 H 0.079 0.921 37 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.582 -1.227 -13.291 14.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.048 3.952 3 H 0.039 0.961 4 C -0.555 4.555 5 H 0.064 0.936 6 C -0.183 4.183 7 N -0.555 5.555 8 Si 0.774 3.226 9 H -0.199 1.199 10 H -0.209 1.209 11 H -0.197 1.197 12 C -0.058 4.058 13 C -0.149 4.149 14 C -0.144 4.144 15 C -0.153 4.153 16 C -0.134 4.134 17 C -0.094 4.094 18 C -0.109 4.109 19 H 0.091 0.909 20 C -0.179 4.179 21 C -0.030 4.030 22 O -0.322 6.322 23 C -0.014 4.014 24 H 0.040 0.960 25 H 0.048 0.952 26 H 0.077 0.923 27 H 0.070 0.930 28 H 0.123 0.877 29 H 0.157 0.843 30 H 0.167 0.833 31 H 0.158 0.842 32 H 0.092 0.908 33 H 0.112 0.888 34 H 0.099 0.901 35 H 0.110 0.890 36 H 0.098 0.902 37 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 4.658 -0.970 -13.055 13.895 hybrid contribution -0.265 -0.426 1.391 1.478 sum 4.392 -1.396 -11.664 12.542 Atomic orbital electron populations 1.21645 0.97981 0.98982 0.99434 1.17868 0.92716 0.94842 0.89765 0.96101 1.21300 1.30923 1.12084 0.91212 0.93567 1.25657 0.95353 0.95707 1.01558 1.69995 1.37577 1.23947 1.23952 0.85759 0.78754 0.78895 0.79172 1.19946 1.20856 1.19693 1.20314 0.95254 0.94860 0.95339 1.21062 1.01107 0.94797 0.97972 1.21364 0.98121 1.00440 0.94442 1.21304 0.98427 0.95084 1.00510 1.21101 1.00323 0.95472 0.96470 1.19538 0.98493 0.95385 0.95972 1.21767 0.96456 0.92976 0.99656 0.90877 1.23028 0.99034 0.97634 0.98209 1.23341 0.89411 0.99716 0.90580 1.88814 1.60921 1.28221 1.54197 1.23627 0.93111 0.83359 1.01293 0.95999 0.95198 0.92321 0.92986 0.87685 0.84331 0.83264 0.84221 0.90771 0.88847 0.90075 0.89005 0.90250 0.90427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.06 8.71 71.98 0.63 -5.43 16 2 C 0.07 3.34 2.33 -12.29 -0.03 3.31 16 3 H 0.02 1.16 5.16 -2.38 -0.01 1.14 16 4 C -0.52 -28.58 8.33 25.60 0.21 -28.37 16 5 H 0.05 2.57 7.73 -2.91 -0.02 2.55 16 6 C 0.02 0.88 5.30 84.65 0.45 1.33 16 7 N -0.92 -52.89 11.32 21.45 0.24 -52.64 16 8 Si 0.95 44.10 29.54 68.60 2.03 46.13 16 9 H -0.27 -12.53 7.11 99.48 0.71 -11.83 16 10 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 11 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 12 C -0.06 -2.46 4.73 -19.86 -0.09 -2.56 16 13 C -0.13 -5.11 8.93 22.27 0.20 -4.91 16 14 C -0.13 -3.83 10.05 22.27 0.22 -3.61 16 15 C -0.14 -3.61 10.05 22.27 0.22 -3.39 16 16 C -0.12 -3.33 8.13 22.27 0.18 -3.15 16 17 C -0.09 -3.40 4.97 -19.86 -0.10 -3.50 16 18 C -0.09 -3.17 3.18 -10.16 -0.03 -3.20 16 19 H 0.07 3.18 5.23 -2.39 -0.01 3.17 16 20 C -0.14 -3.83 6.46 31.58 0.20 -3.63 16 21 C 0.05 1.12 7.70 72.35 0.56 1.68 16 22 O -0.40 -12.97 11.52 -148.98 -1.72 -14.69 16 23 C 0.06 2.02 7.14 72.75 0.52 2.54 16 24 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 25 H 0.03 1.40 7.08 -2.39 -0.02 1.38 16 26 H 0.06 3.19 6.07 -2.39 -0.01 3.17 16 27 H 0.26 14.43 8.31 -92.71 -0.77 13.66 16 28 H 0.11 4.27 7.23 -2.91 -0.02 4.25 16 29 H 0.14 3.36 8.06 -2.91 -0.02 3.34 16 30 H 0.15 2.83 8.06 -2.91 -0.02 2.81 16 31 H 0.14 3.15 7.27 -2.91 -0.02 3.13 16 32 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 33 H 0.09 2.17 6.88 -2.39 -0.02 2.15 16 34 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.09 2.01 8.14 -2.39 -0.02 2.00 16 36 H 0.08 2.20 7.01 -2.39 -0.02 2.18 16 37 H 0.08 2.75 8.14 -2.39 -0.02 2.73 16 Total: -1.00 -62.27 294.50 4.75 -57.52 By element: Atomic # 1 Polarization: 15.50 SS G_CDS: 1.05 Total: 16.56 kcal Atomic # 6 Polarization: -56.02 SS G_CDS: 3.14 Total: -52.88 kcal Atomic # 7 Polarization: -52.89 SS G_CDS: 0.24 Total: -52.64 kcal Atomic # 8 Polarization: -12.97 SS G_CDS: -1.72 Total: -14.69 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Total: -62.27 4.75 -57.52 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260535076.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.005 kcal (2) G-P(sol) polarization free energy of solvation -62.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds