Wall clock time and date at job start Mon Mar 30 2020 05:48:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.46895 * 2 1 4 4 C 1.50695 * 109.47276 * 239.99712 * 2 1 3 5 5 H 1.07993 * 120.00458 * 265.21737 * 4 2 1 6 6 C 1.37882 * 119.99717 * 85.49896 * 4 2 1 7 7 N 1.31513 * 120.00108 * 184.80455 * 6 4 2 8 8 Si 1.86800 * 120.00183 * 4.79798 * 6 4 2 9 9 H 1.48501 * 109.47210 * 94.88068 * 8 6 4 10 10 H 1.48500 * 109.47507 * 214.88283 * 8 6 4 11 11 H 1.48506 * 109.47149 * 334.87850 * 8 6 4 12 12 C 1.50700 * 109.46918 * 119.99781 * 2 1 3 13 13 C 1.38256 * 120.00109 * 66.01594 * 12 2 1 14 14 C 1.38214 * 120.00052 * 179.76587 * 13 12 2 15 15 C 1.38260 * 119.99968 * 0.50073 * 14 13 12 16 16 C 1.38213 * 119.99670 * 359.75067 * 15 14 13 17 17 C 1.38217 * 119.99763 * 246.28613 * 12 2 1 18 18 C 1.50694 * 120.00173 * 0.02562 * 17 12 2 19 19 H 1.09001 * 110.43693 * 3.19683 * 18 17 12 20 20 C 1.54810 * 110.49188 * 240.50213 * 18 17 12 21 21 C 1.54993 * 102.09487 * 220.44450 * 20 18 17 22 22 O 1.44388 * 103.48922 * 37.02455 * 21 20 18 23 23 C 1.43738 * 106.97498 * 319.94045 * 22 21 20 24 24 H 1.09007 * 109.46813 * 175.01602 * 1 2 3 25 25 H 1.08994 * 109.47173 * 295.01750 * 1 2 3 26 26 H 1.08996 * 109.47128 * 55.02283 * 1 2 3 27 27 H 0.97002 * 120.00349 * 179.97438 * 7 6 4 28 28 H 1.08005 * 119.99848 * 359.97438 * 13 12 2 29 29 H 1.07998 * 119.99723 * 180.23317 * 14 13 12 30 30 H 1.07993 * 119.99985 * 179.72340 * 15 14 13 31 31 H 1.08000 * 119.99594 * 179.97438 * 16 15 14 32 32 H 1.09002 * 110.90790 * 338.64651 * 20 18 17 33 33 H 1.09006 * 110.90109 * 102.24626 * 20 18 17 34 34 H 1.08998 * 110.62127 * 278.52670 * 21 20 18 35 35 H 1.09004 * 110.61698 * 155.52390 * 21 20 18 36 36 H 1.09008 * 109.87701 * 267.08920 * 23 22 21 37 37 H 1.09002 * 109.88110 * 145.93956 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.2859 -1.7591 -1.1828 6 6 2.1738 -0.0201 -2.4155 7 7 2.5213 -0.6591 -3.5113 8 14 1.8718 1.8226 -2.4649 9 1 3.1615 2.5402 -2.3010 10 1 1.2633 2.1898 -3.7688 11 1 0.9503 2.2029 -1.3641 12 6 2.0323 -0.7104 1.2305 13 6 1.8039 -2.0647 1.3885 14 6 2.2687 -2.7172 2.5148 15 6 2.9532 -2.0134 3.4883 16 6 3.1771 -0.6585 3.3328 17 6 2.7165 -0.0067 2.2037 18 6 2.9597 1.4708 2.0347 19 1 2.4841 1.8330 1.1232 20 6 4.4782 1.7711 2.0130 21 6 4.5642 3.0709 2.8529 22 8 3.5728 2.8721 3.8836 23 6 2.4387 2.2468 3.2599 24 1 -0.3633 -1.0239 -0.0893 25 1 -0.3633 0.4346 0.9312 26 1 -0.3633 0.5891 -0.8420 27 1 2.6204 -0.1735 -4.3451 28 1 1.2650 -2.6136 0.6302 29 1 2.0935 -3.7759 2.6364 30 1 3.3126 -2.5224 4.3704 31 1 3.7114 -0.1086 4.0934 32 1 5.0409 0.9653 2.4845 33 1 4.8263 1.9425 0.9943 34 1 4.3151 3.9392 2.2430 35 1 5.5565 3.1800 3.2908 36 1 1.7251 3.0067 2.9413 37 1 1.9634 1.5592 3.9595 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260535083.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:48:29 Heat of formation + Delta-G solvation = -31.315928 kcal Electronic energy + Delta-G solvation = -18261.569583 eV Core-core repulsion = 15582.239003 eV Total energy + Delta-G solvation = -2679.330580 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.94485 -38.17284 -34.50087 -33.01148 -31.71352 -29.91742 -28.83986 -27.87963 -25.17578 -23.17959 -22.70294 -22.04256 -19.97220 -19.20977 -17.13207 -16.46349 -16.04730 -15.50698 -14.87433 -14.57911 -14.24681 -13.80488 -13.17281 -13.07414 -12.79277 -12.59036 -12.38358 -12.12679 -11.73166 -11.54036 -11.24914 -11.20359 -11.09921 -10.79874 -10.60963 -10.51756 -10.31966 -9.78471 -9.62251 -9.52259 -9.02035 -8.56812 -8.14442 -7.83495 -6.13153 -4.11608 1.92999 2.08079 3.20506 3.30507 3.31250 4.07861 4.32934 4.36198 4.87150 4.98934 5.13506 5.20971 5.31665 5.38912 5.44071 5.58884 5.59705 5.78820 5.84880 5.87492 5.92194 6.03108 6.20517 6.22022 6.31433 6.41569 6.47773 6.58590 6.74475 6.79848 6.92620 6.99272 7.05687 7.13405 7.27398 7.52735 7.66750 7.72990 8.46441 8.92110 9.48648 10.99882 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.018019 B = 0.010070 C = 0.007434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.541751 B = 2779.811216 C = 3765.538888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.033 3.967 3 H 0.044 0.956 4 C -0.505 4.505 5 H 0.077 0.923 6 C 0.072 3.928 7 N -0.898 5.898 8 Si 0.865 3.135 9 H -0.277 1.277 10 H -0.287 1.287 11 H -0.258 1.258 12 C -0.021 4.021 13 C -0.106 4.106 14 C -0.126 4.126 15 C -0.145 4.145 16 C -0.116 4.116 17 C -0.091 4.091 18 C -0.090 4.090 19 H 0.102 0.898 20 C -0.146 4.146 21 C 0.045 3.955 22 O -0.383 6.383 23 C 0.055 3.945 24 H 0.049 0.951 25 H 0.023 0.977 26 H 0.045 0.955 27 H 0.264 0.736 28 H 0.123 0.877 29 H 0.111 0.889 30 H 0.110 0.890 31 H 0.113 0.887 32 H 0.080 0.920 33 H 0.083 0.917 34 H 0.058 0.942 35 H 0.090 0.910 36 H 0.057 0.943 37 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.918 3.866 12.154 12.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.014 3.986 3 H 0.062 0.938 4 C -0.543 4.543 5 H 0.095 0.905 6 C -0.129 4.129 7 N -0.536 5.536 8 Si 0.692 3.308 9 H -0.203 1.203 10 H -0.213 1.213 11 H -0.183 1.183 12 C -0.021 4.021 13 C -0.124 4.124 14 C -0.144 4.144 15 C -0.163 4.163 16 C -0.134 4.134 17 C -0.091 4.091 18 C -0.108 4.108 19 H 0.120 0.880 20 C -0.183 4.183 21 C -0.031 4.031 22 O -0.302 6.302 23 C -0.022 4.022 24 H 0.068 0.932 25 H 0.042 0.958 26 H 0.064 0.936 27 H 0.074 0.926 28 H 0.141 0.859 29 H 0.129 0.871 30 H 0.128 0.872 31 H 0.131 0.869 32 H 0.099 0.901 33 H 0.101 0.899 34 H 0.077 0.923 35 H 0.108 0.892 36 H 0.075 0.925 37 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 0.969 3.945 12.168 12.829 hybrid contribution -0.075 0.781 -0.567 0.968 sum 0.894 4.727 11.602 12.560 Atomic orbital electron populations 1.22047 0.98073 1.00758 0.98452 1.18469 0.92506 0.96032 0.91585 0.93840 1.20974 1.43718 0.98069 0.91524 0.90509 1.24999 0.94525 0.97906 0.95491 1.69896 1.47989 1.35963 0.99710 0.87042 0.79006 0.86772 0.77942 1.20330 1.21264 1.18266 1.20166 0.93737 0.93815 0.94418 1.21049 1.00056 0.94449 0.96886 1.21081 0.99304 0.99187 0.94822 1.20864 1.01739 0.94381 0.99342 1.20820 1.00678 0.94504 0.97440 1.19438 1.00598 0.94030 0.95054 1.21675 0.96252 0.93168 0.99700 0.88001 1.23244 0.95751 0.97872 1.01466 1.23575 0.92795 0.97067 0.89679 1.88813 1.27348 1.81053 1.32949 1.23317 0.88829 0.95581 0.94459 0.93218 0.95778 0.93629 0.92635 0.85903 0.87062 0.87196 0.86875 0.90134 0.89857 0.92341 0.89200 0.92483 0.89575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.82 8.71 37.16 0.32 -2.49 16 2 C 0.03 0.73 1.84 -92.92 -0.17 0.56 16 3 H 0.04 0.98 2.74 -51.93 -0.14 0.84 16 4 C -0.51 -13.57 8.57 -34.44 -0.30 -13.86 16 5 H 0.08 2.25 7.26 -52.49 -0.38 1.87 16 6 C 0.07 2.01 5.47 -17.82 -0.10 1.92 16 7 N -0.90 -26.76 13.96 55.43 0.77 -25.98 16 8 Si 0.87 20.56 26.42 -169.99 -4.49 16.07 16 9 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 10 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.26 -5.74 5.80 56.52 0.33 -5.41 16 12 C -0.02 -0.43 4.78 -104.62 -0.50 -0.93 16 13 C -0.11 -2.06 8.62 -39.58 -0.34 -2.40 16 14 C -0.13 -2.09 10.05 -39.58 -0.40 -2.49 16 15 C -0.15 -2.27 10.05 -39.58 -0.40 -2.67 16 16 C -0.12 -1.89 8.06 -39.58 -0.32 -2.21 16 17 C -0.09 -1.65 4.76 -104.62 -0.50 -2.14 16 18 C -0.09 -1.49 3.09 -90.24 -0.28 -1.77 16 19 H 0.10 1.84 5.23 -51.93 -0.27 1.57 16 20 C -0.15 -2.16 6.61 -24.73 -0.16 -2.33 16 21 C 0.05 0.59 7.72 38.21 0.29 0.88 16 22 O -0.38 -5.74 11.52 -35.23 -0.41 -6.14 16 23 C 0.05 0.81 7.02 37.74 0.27 1.07 16 24 H 0.05 1.01 7.96 -51.93 -0.41 0.60 16 25 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 26 H 0.04 0.96 6.66 -51.93 -0.35 0.61 16 27 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 28 H 0.12 2.43 7.61 -52.48 -0.40 2.04 16 29 H 0.11 1.57 8.06 -52.49 -0.42 1.14 16 30 H 0.11 1.42 8.06 -52.49 -0.42 0.99 16 31 H 0.11 1.67 7.89 -52.49 -0.41 1.25 16 32 H 0.08 1.18 7.23 -51.93 -0.38 0.81 16 33 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 34 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.06 0.79 8.14 -51.92 -0.42 0.36 16 37 H 0.09 1.24 7.21 -51.93 -0.37 0.87 16 LS Contribution 292.19 15.07 4.40 4.40 Total: -1.00 -29.20 292.19 -7.58 -36.78 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: -5.29 Total: 3.73 kcal Atomic # 6 Polarization: -26.28 SS G_CDS: -2.58 Total: -28.86 kcal Atomic # 7 Polarization: -26.76 SS G_CDS: 0.77 Total: -25.98 kcal Atomic # 8 Polarization: -5.74 SS G_CDS: -0.41 Total: -6.14 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -4.49 Total: 16.07 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -29.20 -7.58 -36.78 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260535083.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.464 kcal (2) G-P(sol) polarization free energy of solvation -29.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds