Wall clock time and date at job start Mon Mar 30 2020 05:46:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47541 * 2 1 4 4 C 1.50702 * 109.47091 * 240.00386 * 2 1 3 5 5 C 1.38635 * 119.75405 * 120.00018 * 4 2 1 6 6 C 1.37610 * 120.24894 * 180.02562 * 5 4 2 7 7 C 1.40722 * 119.74759 * 359.97438 * 6 5 4 8 8 C 1.41395 * 120.24682 * 180.02562 * 7 6 5 9 9 H 1.08000 * 119.99594 * 336.00134 * 8 7 6 10 10 C 1.39939 * 119.99914 * 155.72840 * 8 7 6 11 11 N 1.30830 * 120.00269 * 342.29684 * 10 8 7 12 12 Si 1.86805 * 119.99783 * 162.30249 * 10 8 7 13 13 H 1.48495 * 109.47246 * 60.00088 * 12 10 8 14 14 H 1.48504 * 109.46848 * 179.97438 * 12 10 8 15 15 H 1.48496 * 109.47024 * 299.99488 * 12 10 8 16 16 C 1.40714 * 119.51095 * 0.27981 * 7 6 5 17 17 C 1.37624 * 119.74327 * 359.46507 * 16 7 6 18 18 C 1.52999 * 109.47449 * 120.00003 * 2 1 3 19 19 H 1.08999 * 110.80152 * 63.62611 * 18 2 1 20 20 C 1.54813 * 110.90776 * 299.99797 * 18 2 1 21 21 C 1.54099 * 104.18666 * 220.91828 * 20 18 2 22 22 O 1.43743 * 107.29350 * 357.97317 * 21 20 18 23 23 C 1.44374 * 106.97580 * 26.51395 * 22 21 20 24 24 H 1.08997 * 109.47249 * 59.99457 * 1 2 3 25 25 H 1.09002 * 109.47045 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.46713 * 299.99712 * 1 2 3 27 27 H 1.07996 * 119.87098 * 0.02562 * 5 4 2 28 28 H 1.08001 * 120.13076 * 180.02562 * 6 5 4 29 29 H 0.96996 * 119.99662 * 179.97438 * 11 10 8 30 30 H 1.08001 * 120.13257 * 179.70027 * 16 7 6 31 31 H 1.08001 * 119.88108 * 180.27068 * 17 16 7 32 32 H 1.08993 * 110.48508 * 339.59784 * 20 18 2 33 33 H 1.09005 * 110.48556 * 102.24314 * 20 18 2 34 34 H 1.09005 * 109.87229 * 117.39446 * 21 20 18 35 35 H 1.08997 * 109.87890 * 238.54735 * 21 20 18 36 36 H 1.09005 * 110.61692 * 201.43860 * 23 22 21 37 37 H 1.08998 * 110.61902 * 78.44325 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 6 2.8290 -0.0316 -2.1397 6 6 3.2929 -0.6702 -3.2670 7 6 2.9560 -2.0174 -3.4948 8 6 3.4273 -2.6839 -4.6493 9 1 3.6995 -2.1166 -5.5270 10 6 3.5464 -4.0782 -4.6526 11 7 3.5629 -4.7360 -3.5218 12 14 3.6819 -5.0002 -6.2716 13 1 4.8857 -4.5356 -7.0066 14 1 3.7974 -6.4563 -6.0038 15 1 2.4710 -4.7417 -7.0913 16 6 2.1423 -2.6947 -2.5679 17 6 1.6941 -2.0377 -1.4448 18 6 2.0400 -0.7212 1.2492 19 1 1.7424 -1.7697 1.2395 20 6 1.5425 -0.0175 2.5353 21 6 2.7616 -0.0466 3.4774 22 8 3.8139 -0.7470 2.7931 23 6 3.5785 -0.5833 1.3781 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 3.0865 1.0021 -1.9625 28 1 3.9137 -0.1397 -3.9738 29 1 3.6451 -5.7025 -3.5242 30 1 1.8736 -3.7273 -2.7353 31 1 1.0730 -2.5567 -0.7297 32 1 1.2516 1.0104 2.3194 33 1 0.7090 -0.5671 2.9728 34 1 3.0797 0.9712 3.7033 35 1 2.5058 -0.5702 4.3985 36 1 4.0828 -1.3665 0.8120 37 1 3.9047 0.4023 1.0462 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260584189.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:35 Heat of formation + Delta-G solvation = -50.591474 kcal Electronic energy + Delta-G solvation = -17687.199915 eV Core-core repulsion = 15007.033484 eV Total energy + Delta-G solvation = -2680.166431 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.45306 -37.62965 -34.96280 -33.18762 -30.60977 -29.29460 -28.83801 -28.42082 -25.29327 -22.72061 -22.30515 -21.20745 -20.43998 -18.92447 -17.29055 -16.35759 -15.63736 -15.34140 -14.89805 -14.40871 -13.84132 -13.51201 -13.32512 -12.79178 -12.67315 -12.35742 -12.17458 -12.01977 -11.83429 -11.28009 -11.21198 -11.12394 -10.91689 -10.90052 -10.53817 -10.29961 -10.21732 -10.07262 -9.51343 -9.43153 -9.29642 -9.09270 -7.44363 -7.27811 -6.75305 -4.33689 2.77769 3.05903 3.07495 3.09133 3.21306 3.93341 4.21356 4.59919 4.80668 4.97568 5.15590 5.27412 5.53049 5.58091 5.70365 5.76774 5.86182 5.89780 5.96048 6.08902 6.12224 6.22293 6.30753 6.35231 6.40330 6.49223 6.60280 6.70341 6.97313 7.08735 7.11643 7.30411 7.38154 7.61626 7.88501 8.05937 8.13286 8.31003 8.64825 8.90589 8.98628 10.19196 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.035683 B = 0.005343 C = 0.005108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.489232 B = 5238.906106 C = 5480.613165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.017 4.017 3 H 0.060 0.940 4 C -0.206 4.206 5 C -0.088 4.088 6 C -0.226 4.226 7 C 0.110 3.890 8 C -0.465 4.465 9 H 0.076 0.924 10 C 0.077 3.923 11 N -0.794 5.794 12 Si 0.907 3.093 13 H -0.266 1.266 14 H -0.279 1.279 15 H -0.264 1.264 16 C -0.164 4.164 17 C -0.093 4.093 18 C -0.107 4.107 19 H 0.083 0.917 20 C -0.153 4.153 21 C 0.047 3.953 22 O -0.386 6.386 23 C 0.057 3.943 24 H 0.052 0.948 25 H 0.053 0.947 26 H 0.043 0.957 27 H 0.084 0.916 28 H 0.090 0.910 29 H 0.281 0.719 30 H 0.116 0.884 31 H 0.085 0.915 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.052 0.948 35 H 0.076 0.924 36 H 0.097 0.903 37 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.880 5.557 7.698 10.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.036 4.036 3 H 0.079 0.921 4 C -0.207 4.207 5 C -0.106 4.106 6 C -0.246 4.246 7 C 0.107 3.893 8 C -0.494 4.494 9 H 0.094 0.906 10 C -0.141 4.141 11 N -0.419 5.419 12 Si 0.731 3.269 13 H -0.190 1.190 14 H -0.204 1.204 15 H -0.189 1.189 16 C -0.183 4.183 17 C -0.111 4.111 18 C -0.126 4.126 19 H 0.102 0.898 20 C -0.191 4.191 21 C -0.030 4.030 22 O -0.305 6.305 23 C -0.019 4.019 24 H 0.071 0.929 25 H 0.072 0.928 26 H 0.062 0.938 27 H 0.103 0.897 28 H 0.108 0.892 29 H 0.091 0.909 30 H 0.134 0.866 31 H 0.103 0.897 32 H 0.092 0.908 33 H 0.090 0.910 34 H 0.070 0.930 35 H 0.094 0.906 36 H 0.115 0.885 37 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -3.669 5.195 7.896 10.139 hybrid contribution -0.043 -0.402 -0.807 0.903 sum -3.712 4.793 7.088 9.327 Atomic orbital electron populations 1.21843 0.95790 1.01563 1.00401 1.19727 0.94584 0.97403 0.91867 0.92149 1.18933 1.08600 0.95073 0.98134 1.20375 0.98176 0.97007 0.95041 1.20945 1.07392 0.96925 0.99346 1.17608 0.88630 0.90900 0.92129 1.19558 1.38925 0.91319 0.99644 0.90599 1.25892 0.92414 0.98201 0.97583 1.69820 1.35217 1.09611 1.27250 0.86394 0.79911 0.78155 0.82416 1.19036 1.20353 1.18855 1.21309 1.00730 1.00348 0.95953 1.20453 0.99804 0.93659 0.97228 1.22794 0.95282 1.00673 0.93806 0.89830 1.23040 0.98268 1.01591 0.96206 1.23103 0.87443 0.96470 0.96023 1.88843 1.48314 1.74550 1.18765 1.23593 0.95463 1.01767 0.81088 0.92871 0.92829 0.93797 0.89745 0.89214 0.90855 0.86602 0.89721 0.90822 0.90970 0.93025 0.90556 0.88457 0.92440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.03 8.78 37.16 0.33 -1.71 16 2 C -0.02 -0.28 1.98 -91.77 -0.18 -0.46 16 3 H 0.06 0.95 7.81 -51.93 -0.41 0.54 16 4 C -0.21 -4.23 4.40 -104.32 -0.46 -4.69 16 5 C -0.09 -1.90 9.64 -39.66 -0.38 -2.29 16 6 C -0.23 -5.50 9.80 -38.87 -0.38 -5.89 16 7 C 0.11 2.90 5.57 -106.82 -0.60 2.31 16 8 C -0.46 -12.35 9.05 -37.74 -0.34 -12.69 16 9 H 0.08 1.94 7.91 -52.49 -0.42 1.53 16 10 C 0.08 1.93 5.14 -17.34 -0.09 1.84 16 11 N -0.79 -20.56 10.95 55.55 0.61 -19.95 16 12 Si 0.91 18.69 29.60 -169.99 -5.03 13.66 16 13 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 14 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 15 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16 16 C -0.16 -4.20 8.70 -38.87 -0.34 -4.54 16 17 C -0.09 -2.09 8.65 -39.66 -0.34 -2.43 16 18 C -0.11 -1.65 2.49 -88.61 -0.22 -1.87 16 19 H 0.08 1.40 7.35 -51.93 -0.38 1.02 16 20 C -0.15 -1.90 5.61 -25.20 -0.14 -2.04 16 21 C 0.05 0.59 7.70 37.73 0.29 0.88 16 22 O -0.39 -6.37 11.52 -35.23 -0.41 -6.77 16 23 C 0.06 0.94 6.76 38.21 0.26 1.20 16 24 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.05 0.81 7.37 -51.93 -0.38 0.42 16 26 H 0.04 0.54 7.05 -51.93 -0.37 0.17 16 27 H 0.08 1.62 7.93 -52.49 -0.42 1.21 16 28 H 0.09 2.08 8.06 -52.49 -0.42 1.65 16 29 H 0.28 6.64 8.30 -40.82 -0.34 6.30 16 30 H 0.12 3.09 6.16 -52.49 -0.32 2.77 16 31 H 0.08 1.75 7.09 -52.49 -0.37 1.38 16 32 H 0.07 0.83 7.50 -51.93 -0.39 0.44 16 33 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 34 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 35 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 36 H 0.10 1.79 8.14 -51.93 -0.42 1.36 16 37 H 0.06 0.91 8.01 -51.93 -0.42 0.50 16 LS Contribution 298.89 15.07 4.50 4.50 Total: -1.00 -27.02 298.89 -8.46 -35.48 By element: Atomic # 1 Polarization: 10.98 SS G_CDS: -5.54 Total: 5.44 kcal Atomic # 6 Polarization: -29.77 SS G_CDS: -2.60 Total: -32.37 kcal Atomic # 7 Polarization: -20.56 SS G_CDS: 0.61 Total: -19.95 kcal Atomic # 8 Polarization: -6.37 SS G_CDS: -0.41 Total: -6.77 kcal Atomic # 14 Polarization: 18.69 SS G_CDS: -5.03 Total: 13.66 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -27.02 -8.46 -35.48 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260584189.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.110 kcal (2) G-P(sol) polarization free energy of solvation -27.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds