Wall clock time and date at job start Mon Mar 30 2020 05:48:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.46817 * 2 1 4 4 C 1.50695 * 109.47055 * 239.99712 * 2 1 3 5 5 H 1.08000 * 120.00137 * 239.99673 * 4 2 1 6 6 C 1.37888 * 119.99846 * 60.00143 * 4 2 1 7 7 N 1.31509 * 119.99996 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 119.99807 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46762 * 90.00164 * 8 6 4 10 10 H 1.48499 * 109.47045 * 210.00115 * 8 6 4 11 11 H 1.48498 * 109.47425 * 330.00150 * 8 6 4 12 12 C 1.50703 * 109.46902 * 119.99564 * 2 1 3 13 13 C 1.38229 * 120.00190 * 239.99612 * 12 2 1 14 14 C 1.38232 * 120.00344 * 180.02562 * 13 12 2 15 15 C 1.38237 * 119.99814 * 359.97438 * 14 13 12 16 16 C 1.50703 * 120.00237 * 179.97438 * 15 14 13 17 17 C 1.52994 * 109.46940 * 90.00377 * 16 15 14 18 18 C 1.53367 * 114.56768 * 185.00344 * 17 16 15 19 19 O 1.43348 * 88.49370 * 220.44144 * 18 17 16 20 20 C 1.43342 * 88.32461 * 28.12684 * 19 18 17 21 21 C 1.38242 * 120.00055 * 0.25829 * 15 14 13 22 22 C 1.38236 * 119.99516 * 60.02631 * 12 2 1 23 23 H 1.09004 * 109.47458 * 180.02562 * 1 2 3 24 24 H 1.09011 * 109.47344 * 300.00212 * 1 2 3 25 25 H 1.09000 * 109.47462 * 59.99762 * 1 2 3 26 26 H 0.96994 * 120.00297 * 179.97438 * 7 6 4 27 27 H 1.08004 * 119.99911 * 0.02562 * 13 12 2 28 28 H 1.08001 * 120.00162 * 179.97438 * 14 13 12 29 29 H 1.08995 * 109.46804 * 330.00570 * 16 15 14 30 30 H 1.08995 * 109.46842 * 210.00469 * 16 15 14 31 31 H 1.09004 * 113.56722 * 319.27649 * 17 16 15 32 32 H 1.09002 * 113.39529 * 105.52055 * 18 17 16 33 33 H 1.09005 * 113.38849 * 335.36348 * 18 17 16 34 34 H 1.09005 * 113.39677 * 86.74628 * 20 19 18 35 35 H 1.08999 * 113.39618 * 216.90341 * 20 19 18 36 36 H 1.07993 * 119.99960 * 179.72636 * 21 15 14 37 37 H 1.07991 * 120.00324 * 359.97438 * 22 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6992 -0.2394 -2.4828 7 7 0.9427 0.8296 -2.6034 8 14 2.3224 -1.1196 -4.0079 9 1 1.3446 -2.1616 -4.4122 10 1 2.4872 -0.1403 -5.1120 11 1 3.6307 -1.7567 -3.7119 12 6 2.0323 -0.7103 1.2306 13 6 2.8270 -0.0386 2.1404 14 6 3.2882 -0.6903 3.2689 15 6 2.9541 -2.0137 3.4878 16 6 3.4573 -2.7244 4.7177 17 6 2.4505 -2.5484 5.8561 18 6 2.9036 -3.1253 7.2030 19 8 1.5668 -3.6010 7.4061 20 6 1.4243 -3.6823 5.9821 21 6 2.1633 -2.6869 2.5754 22 6 1.6987 -2.0339 1.4490 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 0.7087 1.1612 -3.4844 27 1 3.0877 0.9955 1.9696 28 1 3.9095 -0.1655 3.9795 29 1 4.4178 -2.3025 5.0136 30 1 3.5781 -3.7856 4.5002 31 1 2.0269 -1.5456 5.9122 32 1 3.2054 -2.3626 7.9210 33 1 3.6377 -3.9253 7.1062 34 1 1.7719 -4.6278 5.5656 35 1 0.4296 -3.4086 5.6303 36 1 1.9060 -3.7221 2.7442 37 1 1.0778 -2.5588 0.7382 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260665294.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:48:04 Heat of formation + Delta-G solvation = -6.245154 kcal Electronic energy + Delta-G solvation = -17207.792065 eV Core-core repulsion = 14529.548635 eV Total energy + Delta-G solvation = -2678.243430 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.87558 -38.77342 -34.91852 -32.88992 -30.89318 -30.26485 -28.42242 -26.33344 -25.30615 -24.99851 -22.20408 -21.48325 -20.32457 -19.45850 -16.55649 -16.25574 -16.04767 -15.82737 -15.25310 -14.73844 -14.53596 -14.12808 -13.08137 -12.92558 -12.82318 -12.61595 -12.51833 -12.28008 -11.70125 -11.45469 -11.37628 -10.94837 -10.86811 -10.66069 -10.51619 -10.41856 -10.22893 -10.03535 -9.88452 -9.38096 -9.00250 -8.39105 -8.25769 -7.66948 -6.02429 -4.09216 2.05989 2.07507 3.28503 3.35429 3.39213 3.84885 4.02684 4.36275 4.49468 4.77333 5.01649 5.12132 5.20834 5.27842 5.29241 5.44653 5.49652 5.57321 5.66344 5.77233 5.86173 5.86535 5.99069 6.12519 6.25333 6.32796 6.62561 6.71593 6.84946 6.98928 7.14170 7.20105 7.23810 7.37504 7.69196 7.75882 7.97191 8.08515 8.38564 8.93492 9.55415 11.03215 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.044244 B = 0.004404 C = 0.004355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.695359 B = 6356.216829 C = 6428.579977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.069 3.931 3 H 0.034 0.966 4 C -0.507 4.507 5 H 0.057 0.943 6 C 0.062 3.938 7 N -0.890 5.890 8 Si 0.892 3.108 9 H -0.280 1.280 10 H -0.286 1.286 11 H -0.274 1.274 12 C -0.031 4.031 13 C -0.130 4.130 14 C -0.120 4.120 15 C -0.117 4.117 16 C -0.065 4.065 17 C -0.147 4.147 18 C 0.030 3.970 19 O -0.375 6.375 20 C 0.032 3.968 21 C -0.121 4.121 22 C -0.110 4.110 23 H 0.028 0.972 24 H 0.008 0.992 25 H 0.085 0.915 26 H 0.261 0.739 27 H 0.114 0.886 28 H 0.108 0.892 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.108 0.892 32 H 0.084 0.916 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.086 0.914 36 H 0.108 0.892 37 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.493 -6.093 14.166 15.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.050 3.950 3 H 0.052 0.948 4 C -0.545 4.545 5 H 0.075 0.925 6 C -0.140 4.140 7 N -0.529 5.529 8 Si 0.720 3.280 9 H -0.207 1.207 10 H -0.212 1.212 11 H -0.199 1.199 12 C -0.031 4.031 13 C -0.149 4.149 14 C -0.138 4.138 15 C -0.117 4.117 16 C -0.102 4.102 17 C -0.165 4.165 18 C -0.047 4.047 19 O -0.294 6.294 20 C -0.044 4.044 21 C -0.139 4.139 22 C -0.128 4.128 23 H 0.047 0.953 24 H 0.027 0.973 25 H 0.103 0.897 26 H 0.071 0.929 27 H 0.132 0.868 28 H 0.127 0.873 29 H 0.091 0.909 30 H 0.088 0.912 31 H 0.126 0.874 32 H 0.102 0.898 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.105 0.895 36 H 0.126 0.874 37 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 3.241 -6.037 14.264 15.824 hybrid contribution 0.407 -0.387 -1.083 1.220 sum 3.648 -6.424 13.181 15.110 Atomic orbital electron populations 1.21782 0.97646 0.99241 1.00225 1.17912 0.92869 0.95444 0.88742 0.94825 1.21115 1.31153 1.12338 0.89871 0.92496 1.24962 0.95064 0.94986 0.98945 1.69881 1.36717 1.22877 1.23419 0.86585 0.79313 0.79415 0.82677 1.20659 1.21209 1.19900 1.20687 0.92917 0.93884 0.95576 1.21115 0.99294 0.99869 0.94578 1.20840 1.00939 0.94222 0.97820 1.19471 1.01145 0.94617 0.96500 1.20425 0.97610 1.00213 0.91968 1.23977 0.97209 1.00607 0.94757 1.23750 0.86371 0.98021 0.96572 1.89844 1.28207 1.88235 1.23107 1.23795 1.01016 0.98078 0.81546 1.20906 0.98987 0.98975 0.95044 1.21062 1.00172 0.94928 0.96588 0.95314 0.97315 0.89654 0.92946 0.86807 0.87343 0.90864 0.91159 0.87376 0.89816 0.90349 0.90263 0.89531 0.87388 0.86167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.15 8.78 37.16 0.33 -2.82 16 2 C 0.07 1.70 2.48 -92.93 -0.23 1.47 16 3 H 0.03 0.90 7.88 -51.93 -0.41 0.49 16 4 C -0.51 -13.69 8.24 -34.44 -0.28 -13.98 16 5 H 0.06 1.54 7.60 -52.49 -0.40 1.14 16 6 C 0.06 1.68 5.30 -17.82 -0.09 1.59 16 7 N -0.89 -25.09 11.32 55.43 0.63 -24.46 16 8 Si 0.89 21.08 29.54 -169.99 -5.02 16.06 16 9 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 10 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 11 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 12 C -0.03 -0.65 4.74 -104.62 -0.50 -1.15 16 13 C -0.13 -2.47 9.67 -39.59 -0.38 -2.85 16 14 C -0.12 -1.91 9.70 -39.58 -0.38 -2.30 16 15 C -0.12 -1.74 5.12 -104.62 -0.54 -2.27 16 16 C -0.06 -0.71 5.31 -27.88 -0.15 -0.86 16 17 C -0.15 -1.54 4.14 -90.20 -0.37 -1.91 16 18 C 0.03 0.28 8.33 24.59 0.20 0.49 16 19 O -0.38 -4.68 12.74 -35.23 -0.45 -5.13 16 20 C 0.03 0.35 8.33 24.64 0.21 0.55 16 21 C -0.12 -1.96 9.70 -39.58 -0.38 -2.35 16 22 C -0.11 -2.14 8.71 -39.58 -0.34 -2.48 16 23 H 0.03 0.65 7.39 -51.93 -0.38 0.27 16 24 H 0.01 0.17 8.14 -51.92 -0.42 -0.25 16 25 H 0.08 2.24 6.07 -51.93 -0.32 1.93 16 26 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 27 H 0.11 2.06 7.95 -52.48 -0.42 1.65 16 28 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 29 H 0.07 0.72 8.09 -51.93 -0.42 0.30 16 30 H 0.07 0.70 7.73 -51.93 -0.40 0.30 16 31 H 0.11 1.22 8.11 -51.93 -0.42 0.80 16 32 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.08 0.62 8.11 -51.93 -0.42 0.20 16 34 H 0.08 0.74 7.87 -51.93 -0.41 0.33 16 35 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 37 H 0.12 2.39 7.58 -52.49 -0.40 2.00 16 LS Contribution 306.69 15.07 4.62 4.62 Total: -1.00 -28.81 306.69 -8.78 -37.60 By element: Atomic # 1 Polarization: 5.81 SS G_CDS: -5.64 Total: 0.17 kcal Atomic # 6 Polarization: -25.94 SS G_CDS: -2.92 Total: -28.86 kcal Atomic # 7 Polarization: -25.09 SS G_CDS: 0.63 Total: -24.46 kcal Atomic # 8 Polarization: -4.68 SS G_CDS: -0.45 Total: -5.13 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -28.81 -8.78 -37.60 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260665294.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.352 kcal (2) G-P(sol) polarization free energy of solvation -28.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds