Wall clock time and date at job start Mon Mar 30 2020 06:08:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.34640 * 126.20778 * 2 1 4 4 C 1.40317 * 108.20689 * 180.08252 * 3 2 1 5 5 N 1.30462 * 108.02855 * 359.90376 * 4 3 2 6 6 N 1.35151 * 126.21254 * 180.02562 * 2 1 3 7 7 C 1.46503 * 126.00527 * 0.02562 * 6 2 1 8 8 C 1.50864 * 124.64551 * 179.77480 * 4 3 2 9 9 C 1.53276 * 109.06012 * 18.04988 * 8 4 3 10 10 C 1.53104 * 109.46094 * 312.58901 * 9 8 4 11 11 C 1.52785 * 117.83505 * 280.77739 * 10 9 8 12 12 C 1.52871 * 117.85712 * 211.79223 * 10 9 8 13 13 C 1.51078 * 127.84171 * 0.06304 * 3 2 1 14 14 H 1.09002 * 109.86339 * 312.21072 * 13 3 2 15 15 C 1.50699 * 109.86530 * 73.24735 * 13 3 2 16 16 H 1.07997 * 119.99754 * 52.83980 * 15 13 3 17 17 C 1.37884 * 120.00014 * 232.84476 * 15 13 3 18 18 N 1.31507 * 119.99806 * 5.00424 * 17 15 13 19 19 Si 1.86796 * 119.99773 * 185.01058 * 17 15 13 20 20 H 1.48492 * 109.47358 * 89.99668 * 19 17 15 21 21 H 1.48498 * 109.46850 * 209.99965 * 19 17 15 22 22 H 1.48505 * 109.47138 * 329.99199 * 19 17 15 23 23 H 1.09001 * 109.46616 * 94.98525 * 1 2 3 24 24 H 1.08998 * 109.47143 * 214.98207 * 1 2 3 25 25 H 1.09004 * 109.47249 * 334.98803 * 1 2 3 26 26 H 1.08990 * 109.47353 * 269.97171 * 7 6 2 27 27 H 1.09000 * 109.46765 * 29.97113 * 7 6 2 28 28 H 1.09004 * 109.47025 * 149.96484 * 7 6 2 29 29 H 1.09002 * 109.53451 * 137.94291 * 8 4 3 30 30 H 1.08997 * 109.54229 * 258.19528 * 8 4 3 31 31 H 1.08993 * 109.47836 * 192.58208 * 9 8 4 32 32 H 1.09001 * 109.46185 * 72.57907 * 9 8 4 33 33 H 1.08996 * 117.50763 * 144.70203 * 11 10 9 34 34 H 1.09003 * 117.50067 * 359.67223 * 11 10 9 35 35 H 1.08999 * 117.49761 * 0.30521 * 12 10 9 36 36 H 1.08998 * 117.54722 * 215.22054 * 12 10 9 37 37 H 0.97007 * 119.99816 * 175.00191 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3023 1.0864 0.0000 4 6 3.6368 0.6528 -0.0019 5 7 3.6374 -0.6519 -0.0009 6 7 2.3054 -1.0904 -0.0005 7 6 1.8580 -2.4855 -0.0016 8 6 4.8360 1.5681 -0.0074 9 6 4.3992 2.9680 0.4385 10 6 3.1339 3.3739 -0.3220 11 6 3.2940 3.8796 -1.7548 12 6 2.9326 4.8569 -0.6337 13 6 1.8871 2.5390 0.0013 14 1 1.1224 2.7063 -0.7572 15 6 1.3548 2.9182 1.3592 16 1 1.9435 2.7239 2.2435 17 6 0.1161 3.5132 1.4726 18 7 -0.6425 3.6604 0.4085 19 14 -0.4843 4.1103 3.1376 20 1 -0.0640 5.5202 3.3389 21 1 -1.9658 4.0230 3.1899 22 1 0.0996 3.2621 4.2076 23 1 -0.3632 -0.0893 -1.0238 24 1 -0.3633 -0.8420 0.5892 25 1 -0.3634 0.9313 0.4345 26 1 1.7471 -2.8323 1.0256 27 1 0.8995 -2.5591 -0.5154 28 1 2.5944 -3.1028 -0.5162 29 1 5.5901 1.1849 0.6800 30 1 5.2509 1.6194 -1.0140 31 1 5.1952 3.6818 0.2267 32 1 4.1932 2.9605 1.5088 33 1 2.5125 3.6224 -2.4697 34 1 4.3043 3.9305 -2.1606 35 1 3.7054 5.5503 -0.3018 36 1 1.9135 5.2429 -0.6115 37 1 -1.5420 4.0121 0.4990 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260683663.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:08:34 Heat of formation + Delta-G solvation = 87.634140 kcal Electronic energy + Delta-G solvation = -18597.144485 eV Core-core repulsion = 15955.264718 eV Total energy + Delta-G solvation = -2641.879767 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.59001 -37.55182 -33.53282 -33.02152 -31.21262 -30.72396 -28.41083 -25.95415 -25.36863 -23.62827 -22.12337 -21.26609 -19.56900 -18.51200 -17.29389 -16.01901 -15.50602 -14.98974 -14.64234 -14.25169 -13.83334 -13.29381 -12.99479 -12.55087 -12.39825 -12.19519 -12.00079 -11.86444 -11.50389 -11.35451 -11.20985 -10.95093 -10.77302 -10.57378 -10.51377 -10.09111 -9.97774 -9.74003 -9.07478 -8.84010 -8.45482 -8.39678 -8.18172 -7.12115 -5.96065 -3.99047 2.72543 3.25945 3.31264 3.38366 3.42114 3.82032 4.45844 4.88028 5.05428 5.30271 5.45876 5.50389 5.57219 5.68126 5.76093 5.80177 5.92908 5.96406 6.06972 6.18715 6.31513 6.38216 6.45652 6.49502 6.61326 6.74741 6.83002 6.87341 7.01351 7.09010 7.20898 7.24044 7.59192 7.76096 7.87432 7.95166 8.02386 8.49462 8.63990 9.09909 9.61547 11.08150 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.017724 B = 0.011217 C = 0.008119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1579.398304 B = 2495.513124 C = 3447.695447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.071 3.929 3 C -0.175 4.175 4 C 0.068 3.932 5 N -0.319 5.319 6 N -0.397 5.397 7 C 0.113 3.887 8 C -0.026 4.026 9 C -0.073 4.073 10 C -0.089 4.089 11 C -0.196 4.196 12 C -0.164 4.164 13 C 0.136 3.864 14 H 0.076 0.924 15 C -0.483 4.483 16 H 0.051 0.949 17 C 0.068 3.932 18 N -0.895 5.895 19 Si 0.883 3.117 20 H -0.280 1.280 21 H -0.288 1.288 22 H -0.276 1.276 23 H 0.060 0.940 24 H 0.048 0.952 25 H 0.112 0.888 26 H 0.061 0.939 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.067 0.933 30 H 0.070 0.930 31 H 0.053 0.947 32 H 0.071 0.929 33 H 0.083 0.917 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.096 0.904 37 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.989 -5.227 -2.143 6.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.052 4.052 3 C -0.186 4.186 4 C -0.098 4.098 5 N -0.141 5.141 6 N -0.183 5.183 7 C -0.030 4.030 8 C -0.065 4.065 9 C -0.111 4.111 10 C -0.089 4.089 11 C -0.233 4.233 12 C -0.201 4.201 13 C 0.116 3.884 14 H 0.095 0.905 15 C -0.522 4.522 16 H 0.069 0.931 17 C -0.133 4.133 18 N -0.534 5.534 19 Si 0.711 3.289 20 H -0.207 1.207 21 H -0.214 1.214 22 H -0.201 1.201 23 H 0.079 0.921 24 H 0.067 0.933 25 H 0.131 0.869 26 H 0.079 0.921 27 H 0.096 0.904 28 H 0.095 0.905 29 H 0.085 0.915 30 H 0.088 0.912 31 H 0.072 0.928 32 H 0.089 0.911 33 H 0.101 0.899 34 H 0.092 0.908 35 H 0.091 0.909 36 H 0.115 0.885 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 4.476 -6.305 -2.202 8.039 hybrid contribution -0.911 0.840 0.974 1.576 sum 3.565 -5.464 -1.228 6.639 Atomic orbital electron populations 1.20398 0.87815 1.04680 1.01393 1.20477 0.94237 0.86453 1.04028 1.20598 0.90369 0.98154 1.09464 1.22205 0.96290 0.90981 1.00323 1.76867 0.96991 1.12732 1.27559 1.48212 1.03670 1.05115 1.61275 1.21530 1.00123 0.79229 1.02074 1.19862 0.92570 0.92946 1.01153 1.21007 0.95415 0.93990 1.00696 1.21750 0.97579 0.95794 0.93795 1.22946 1.00472 1.07051 0.92859 1.22731 1.01895 0.92938 1.02560 1.17202 0.90316 0.82832 0.98057 0.90550 1.20917 1.02019 1.37084 0.92133 0.93064 1.24895 0.97002 0.95371 0.95988 1.69865 1.08776 1.46882 1.27914 0.86740 0.77688 0.79465 0.84980 1.20659 1.21417 1.20093 0.92099 0.93260 0.86942 0.92079 0.90422 0.90458 0.91479 0.91154 0.92815 0.91075 0.89880 0.90836 0.90872 0.88526 0.92943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.63 9.70 36.00 0.35 -1.28 16 2 C 0.07 1.52 6.92 -82.41 -0.57 0.95 16 3 C -0.18 -4.05 5.17 -104.93 -0.54 -4.59 16 4 C 0.07 1.48 7.05 -82.31 -0.58 0.90 16 5 N -0.32 -6.84 12.56 33.74 0.42 -6.41 16 6 N -0.40 -7.84 4.02 -64.01 -0.26 -8.10 16 7 C 0.11 1.57 11.17 59.85 0.67 2.24 16 8 C -0.03 -0.48 6.30 -27.66 -0.17 -0.65 16 9 C -0.07 -1.37 5.55 -26.53 -0.15 -1.52 16 10 C -0.09 -1.87 1.26 -154.38 -0.19 -2.06 16 11 C -0.20 -3.76 9.93 -26.82 -0.27 -4.03 16 12 C -0.16 -3.33 9.88 -26.77 -0.26 -3.59 16 13 C 0.14 3.26 2.13 -92.48 -0.20 3.06 16 14 H 0.08 2.04 6.86 -51.93 -0.36 1.69 16 15 C -0.48 -12.55 7.59 -34.44 -0.26 -12.82 16 16 H 0.05 1.39 7.74 -52.49 -0.41 0.98 16 17 C 0.07 1.78 5.14 -17.82 -0.09 1.68 16 18 N -0.90 -23.87 12.60 55.43 0.70 -23.17 16 19 Si 0.88 20.65 29.54 -169.99 -5.02 15.63 16 20 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 21 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 22 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 23 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 24 H 0.05 0.80 8.00 -51.93 -0.42 0.39 16 25 H 0.11 2.54 7.07 -51.93 -0.37 2.17 16 26 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.08 0.91 7.80 -51.93 -0.40 0.51 16 28 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 30 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.05 0.87 8.09 -51.93 -0.42 0.45 16 32 H 0.07 1.43 7.91 -51.93 -0.41 1.02 16 33 H 0.08 1.65 8.14 -51.93 -0.42 1.22 16 34 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 35 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 36 H 0.10 2.19 8.14 -51.93 -0.42 1.76 16 37 H 0.26 6.71 8.32 -40.82 -0.34 6.38 16 LS Contribution 302.89 15.07 4.56 4.56 Total: -1.00 -28.92 302.89 -7.59 -36.50 By element: Atomic # 1 Polarization: 8.41 SS G_CDS: -5.72 Total: 2.69 kcal Atomic # 6 Polarization: -19.43 SS G_CDS: -2.27 Total: -21.70 kcal Atomic # 7 Polarization: -38.54 SS G_CDS: 0.87 Total: -37.68 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -28.92 -7.59 -36.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260683663.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.136 kcal (2) G-P(sol) polarization free energy of solvation -28.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.502 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds