Wall clock time and date at job start Mon Mar 30 2020 06:08:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.34640 * 126.20778 * 2 1 4 4 C 1.40317 * 108.20689 * 180.08252 * 3 2 1 5 5 N 1.30462 * 108.02855 * 359.90376 * 4 3 2 6 6 N 1.35151 * 126.21254 * 180.02562 * 2 1 3 7 7 C 1.46503 * 126.00527 * 0.02562 * 6 2 1 8 8 C 1.50864 * 124.64551 * 179.77480 * 4 3 2 9 9 C 1.53276 * 109.06012 * 18.04988 * 8 4 3 10 10 C 1.53104 * 109.46094 * 312.58901 * 9 8 4 11 11 C 1.52785 * 117.83505 * 280.77739 * 10 9 8 12 12 C 1.52871 * 117.85712 * 211.79223 * 10 9 8 13 13 C 1.51078 * 127.84171 * 0.06304 * 3 2 1 14 14 H 1.09002 * 109.86339 * 312.21072 * 13 3 2 15 15 C 1.50699 * 109.86530 * 73.24735 * 13 3 2 16 16 H 1.07997 * 119.99754 * 52.83980 * 15 13 3 17 17 C 1.37884 * 120.00014 * 232.84476 * 15 13 3 18 18 N 1.31507 * 119.99806 * 5.00424 * 17 15 13 19 19 Si 1.86796 * 119.99773 * 185.01058 * 17 15 13 20 20 H 1.48492 * 109.47358 * 89.99668 * 19 17 15 21 21 H 1.48498 * 109.46850 * 209.99965 * 19 17 15 22 22 H 1.48505 * 109.47138 * 329.99199 * 19 17 15 23 23 H 1.09001 * 109.46616 * 94.98525 * 1 2 3 24 24 H 1.08998 * 109.47143 * 214.98207 * 1 2 3 25 25 H 1.09004 * 109.47249 * 334.98803 * 1 2 3 26 26 H 1.08990 * 109.47353 * 269.97171 * 7 6 2 27 27 H 1.09000 * 109.46765 * 29.97113 * 7 6 2 28 28 H 1.09004 * 109.47025 * 149.96484 * 7 6 2 29 29 H 1.09002 * 109.53451 * 137.94291 * 8 4 3 30 30 H 1.08997 * 109.54229 * 258.19528 * 8 4 3 31 31 H 1.08993 * 109.47836 * 192.58208 * 9 8 4 32 32 H 1.09001 * 109.46185 * 72.57907 * 9 8 4 33 33 H 1.08996 * 117.50763 * 144.70203 * 11 10 9 34 34 H 1.09003 * 117.50067 * 359.67223 * 11 10 9 35 35 H 1.08999 * 117.49761 * 0.30521 * 12 10 9 36 36 H 1.08998 * 117.54722 * 215.22054 * 12 10 9 37 37 H 0.97007 * 119.99816 * 175.00191 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3023 1.0864 0.0000 4 6 3.6368 0.6528 -0.0019 5 7 3.6374 -0.6519 -0.0009 6 7 2.3054 -1.0904 -0.0005 7 6 1.8580 -2.4855 -0.0016 8 6 4.8360 1.5681 -0.0074 9 6 4.3992 2.9680 0.4385 10 6 3.1339 3.3739 -0.3220 11 6 3.2940 3.8796 -1.7548 12 6 2.9326 4.8569 -0.6337 13 6 1.8871 2.5390 0.0013 14 1 1.1224 2.7063 -0.7572 15 6 1.3548 2.9182 1.3592 16 1 1.9435 2.7239 2.2435 17 6 0.1161 3.5132 1.4726 18 7 -0.6425 3.6604 0.4085 19 14 -0.4843 4.1103 3.1376 20 1 -0.0640 5.5202 3.3389 21 1 -1.9658 4.0230 3.1899 22 1 0.0996 3.2621 4.2076 23 1 -0.3632 -0.0893 -1.0238 24 1 -0.3633 -0.8420 0.5892 25 1 -0.3634 0.9313 0.4345 26 1 1.7471 -2.8323 1.0256 27 1 0.8995 -2.5591 -0.5154 28 1 2.5944 -3.1028 -0.5162 29 1 5.5901 1.1849 0.6800 30 1 5.2509 1.6194 -1.0140 31 1 5.1952 3.6818 0.2267 32 1 4.1932 2.9605 1.5088 33 1 2.5125 3.6224 -2.4697 34 1 4.3043 3.9305 -2.1606 35 1 3.7054 5.5503 -0.3018 36 1 1.9135 5.2429 -0.6115 37 1 -1.5420 4.0121 0.4990 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260683663.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:08:34 Heat of formation + Delta-G solvation = 72.342726 kcal Electronic energy + Delta-G solvation = -18597.807571 eV Core-core repulsion = 15955.264718 eV Total energy + Delta-G solvation = -2642.542853 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.17065 -39.14966 -35.08809 -34.84052 -32.90947 -32.14064 -30.12097 -27.47341 -26.99047 -25.34222 -23.69734 -22.85895 -21.15750 -20.10517 -18.99684 -17.89816 -17.03433 -16.56038 -16.40732 -15.78482 -15.38775 -14.81107 -14.50270 -14.08160 -13.97326 -13.75819 -13.53282 -13.35389 -13.15650 -12.84160 -12.80948 -12.74042 -12.54313 -12.16245 -12.05906 -11.82928 -11.63236 -11.58896 -10.77759 -10.58934 -10.39620 -10.03859 -9.71043 -8.81612 -7.94055 -6.03258 1.13204 1.41419 1.45341 1.52486 1.87356 2.13986 2.51859 3.22118 3.37961 3.68715 4.02681 4.12204 4.27028 4.33376 4.39955 4.45995 4.47401 4.55885 4.66097 4.70950 4.80617 4.92479 4.96031 4.98385 5.11963 5.20353 5.23061 5.29710 5.37042 5.51030 5.58194 5.60305 5.79093 5.96136 6.02830 6.16083 6.45678 6.55928 7.00830 7.10412 7.58492 9.07486 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.017724 B = 0.011217 C = 0.008119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1579.398304 B = 2495.513124 C = 3447.695447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.063 3.937 3 C -0.215 4.215 4 C 0.057 3.943 5 N -0.332 5.332 6 N -0.394 5.394 7 C 0.100 3.900 8 C -0.024 4.024 9 C -0.065 4.065 10 C -0.107 4.107 11 C -0.176 4.176 12 C -0.168 4.168 13 C 0.142 3.858 14 H 0.037 0.963 15 C -0.487 4.487 16 H 0.033 0.967 17 C 0.032 3.968 18 N -0.917 5.917 19 Si 0.932 3.068 20 H -0.279 1.279 21 H -0.284 1.284 22 H -0.278 1.278 23 H 0.074 0.926 24 H 0.079 0.921 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.101 0.899 28 H 0.094 0.906 29 H 0.085 0.915 30 H 0.089 0.911 31 H 0.087 0.913 32 H 0.050 0.950 33 H 0.068 0.932 34 H 0.107 0.893 35 H 0.099 0.901 36 H 0.062 0.938 37 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.276 -6.130 -2.195 8.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.062 4.062 3 C -0.226 4.226 4 C -0.109 4.109 5 N -0.155 5.155 6 N -0.180 5.180 7 C -0.040 4.040 8 C -0.063 4.063 9 C -0.103 4.103 10 C -0.108 4.108 11 C -0.213 4.213 12 C -0.205 4.205 13 C 0.122 3.878 14 H 0.056 0.944 15 C -0.525 4.525 16 H 0.052 0.948 17 C -0.166 4.166 18 N -0.557 5.557 19 Si 0.759 3.241 20 H -0.205 1.205 21 H -0.210 1.210 22 H -0.203 1.203 23 H 0.093 0.907 24 H 0.098 0.902 25 H 0.094 0.906 26 H 0.095 0.905 27 H 0.120 0.880 28 H 0.112 0.888 29 H 0.104 0.896 30 H 0.108 0.892 31 H 0.105 0.895 32 H 0.069 0.931 33 H 0.086 0.914 34 H 0.126 0.874 35 H 0.118 0.882 36 H 0.081 0.919 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 5.769 -7.231 -2.252 9.520 hybrid contribution -1.356 1.028 0.969 1.958 sum 4.413 -6.203 -1.282 7.720 Atomic orbital electron populations 1.20306 0.86742 1.03996 1.02469 1.20789 0.95149 0.87066 1.03170 1.20702 0.91867 0.98009 1.11992 1.22666 0.96750 0.91427 1.00013 1.76799 0.98077 1.12641 1.28000 1.48595 1.02893 1.06626 1.59862 1.21981 1.01765 0.76482 1.03762 1.19977 0.91761 0.91796 1.02725 1.20962 0.95087 0.95297 0.98987 1.21727 0.97612 0.95643 0.95806 1.22942 1.01721 1.05014 0.91621 1.22683 1.00895 0.93190 1.03741 1.16913 0.90685 0.84525 0.95652 0.94437 1.21000 1.01992 1.36950 0.92601 0.94823 1.25378 0.97191 0.95706 0.98342 1.69972 1.08840 1.47688 1.29164 0.85980 0.77339 0.78818 0.81977 1.20544 1.20964 1.20312 0.90745 0.90231 0.90556 0.90518 0.88044 0.88755 0.89618 0.89246 0.89493 0.93113 0.91372 0.87449 0.88237 0.91923 0.93123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.93 9.70 71.23 0.69 -2.24 16 2 C 0.06 2.67 6.92 41.22 0.29 2.96 16 3 C -0.21 -9.99 5.17 -20.06 -0.10 -10.10 16 4 C 0.06 2.42 7.05 43.32 0.31 2.73 16 5 N -0.33 -13.73 12.56 -47.15 -0.59 -14.33 16 6 N -0.39 -14.94 4.02 -356.42 -1.43 -16.37 16 7 C 0.10 2.52 11.17 127.77 1.43 3.94 16 8 C -0.02 -0.81 6.30 29.99 0.19 -0.62 16 9 C -0.07 -2.34 5.55 30.72 0.17 -2.17 16 10 C -0.11 -4.49 1.26 -52.10 -0.07 -4.56 16 11 C -0.18 -6.53 9.93 30.54 0.30 -6.23 16 12 C -0.17 -6.75 9.88 30.57 0.30 -6.44 16 13 C 0.14 7.01 2.13 -12.00 -0.03 6.98 16 14 H 0.04 2.11 6.86 -2.39 -0.02 2.09 16 15 C -0.49 -26.06 7.59 25.60 0.19 -25.87 16 16 H 0.03 1.88 7.74 -2.91 -0.02 1.85 16 17 C 0.03 1.73 5.14 84.66 0.44 2.16 16 18 N -0.92 -50.58 12.60 21.45 0.27 -50.31 16 19 Si 0.93 43.12 29.54 68.60 2.03 45.14 16 20 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 21 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 22 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 23 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 24 H 0.08 2.48 8.00 -2.39 -0.02 2.46 16 25 H 0.08 3.53 7.07 -2.38 -0.02 3.51 16 26 H 0.08 1.71 8.14 -2.39 -0.02 1.70 16 27 H 0.10 2.06 7.80 -2.39 -0.02 2.04 16 28 H 0.09 2.06 8.14 -2.38 -0.02 2.04 16 29 H 0.09 2.60 8.14 -2.39 -0.02 2.58 16 30 H 0.09 2.71 8.14 -2.39 -0.02 2.69 16 31 H 0.09 2.51 8.09 -2.39 -0.02 2.49 16 32 H 0.05 2.00 7.91 -2.39 -0.02 1.98 16 33 H 0.07 2.71 8.14 -2.39 -0.02 2.69 16 34 H 0.11 3.26 8.14 -2.39 -0.02 3.24 16 35 H 0.10 3.41 8.14 -2.39 -0.02 3.39 16 36 H 0.06 2.93 8.14 -2.39 -0.02 2.91 16 37 H 0.26 13.77 8.32 -92.70 -0.77 13.00 16 Total: -1.00 -63.89 302.89 5.42 -58.46 By element: Atomic # 1 Polarization: 15.81 SS G_CDS: 1.04 Total: 16.85 kcal Atomic # 6 Polarization: -43.56 SS G_CDS: 4.11 Total: -39.45 kcal Atomic # 7 Polarization: -79.25 SS G_CDS: -1.76 Total: -81.01 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.14 kcal Total: -63.89 5.42 -58.46 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260683663.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.806 kcal (2) G-P(sol) polarization free energy of solvation -63.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.464 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds