Wall clock time and date at job start Mon Mar 30 2020 05:42:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35903 * 117.00073 * 2 1 4 4 C 1.38756 * 120.17381 * 0.02562 * 3 2 1 5 5 C 1.37833 * 119.71373 * 180.10638 * 4 3 2 6 6 C 1.38965 * 120.62206 * 359.89626 * 5 4 3 7 7 C 1.37700 * 119.76954 * 359.93604 * 6 5 4 8 8 C 1.38425 * 120.17133 * 179.97438 * 3 2 1 9 9 C 1.50643 * 122.56336 * 180.39635 * 7 6 5 10 10 H 1.09001 * 109.25679 * 102.57553 * 9 7 6 11 11 C 1.52999 * 109.22364 * 222.02209 * 9 7 6 12 12 C 1.52738 * 110.59134 * 342.28796 * 9 7 6 13 13 H 1.09001 * 109.67982 * 291.37773 * 12 9 7 14 14 C 1.50703 * 109.71362 * 170.84271 * 12 9 7 15 15 H 1.08001 * 119.99979 * 1.06061 * 14 12 9 16 16 C 1.37873 * 119.99713 * 181.06075 * 14 12 9 17 17 N 1.31520 * 120.00221 * 0.02562 * 16 14 12 18 18 Si 1.86806 * 119.99776 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.47033 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.46839 * 120.00141 * 18 16 14 21 21 H 1.48506 * 109.46882 * 240.00048 * 18 16 14 22 22 C 1.53324 * 108.37528 * 51.09983 * 12 9 7 23 23 C 1.50655 * 117.68368 * 179.71310 * 6 5 4 24 24 H 1.08997 * 109.47102 * 59.99210 * 1 2 3 25 25 H 1.08996 * 109.47032 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.46884 * 299.99759 * 1 2 3 27 27 H 1.07997 * 120.14677 * 0.12353 * 4 3 2 28 28 H 1.07996 * 119.69166 * 180.18295 * 5 4 3 29 29 H 1.07995 * 119.75034 * 0.03037 * 8 3 2 30 30 H 1.09004 * 109.47874 * 181.08303 * 11 9 7 31 31 H 1.09001 * 109.47269 * 301.08288 * 11 9 7 32 32 H 1.09000 * 109.47351 * 61.07992 * 11 9 7 33 33 H 0.96993 * 119.99800 * 180.02562 * 17 16 14 34 34 H 1.09005 * 109.67778 * 170.37429 * 22 12 9 35 35 H 1.08995 * 109.67798 * 49.82161 * 22 12 9 36 36 H 1.08995 * 109.25383 * 282.78535 * 23 6 5 37 37 H 1.08999 * 109.25350 * 42.21863 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2938 2.3769 0.0005 5 6 1.9294 3.5999 -0.0017 6 6 3.3170 3.6766 -0.0023 7 6 4.0656 2.5208 0.0007 8 6 3.4281 1.2875 0.0005 9 6 5.5719 2.5305 0.0090 10 1 5.9273 2.3077 1.0151 11 6 6.0879 1.4615 -0.9564 12 6 6.1027 3.8964 -0.4217 13 1 5.8864 4.0579 -1.4778 14 6 7.5911 3.9585 -0.1933 15 1 8.1128 3.1001 0.2035 16 6 8.2866 5.1111 -0.4908 17 7 7.6512 6.1566 -0.9736 18 14 10.1314 5.1883 -0.2070 19 1 10.6027 3.8909 0.3405 20 1 10.8191 5.4622 -1.4943 21 1 10.4385 6.2736 0.7590 22 6 5.4058 4.9727 0.4188 23 6 3.9423 5.0472 -0.0115 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 0.2151 2.3264 0.0030 28 1 1.3437 4.5072 0.0017 29 1 4.0151 0.3809 0.0005 30 1 7.1778 1.4518 -0.9392 31 1 5.7111 0.4849 -0.6522 32 1 5.7424 1.6859 -1.9655 33 1 8.1406 6.9673 -1.1832 34 1 5.8868 5.9367 0.2527 35 1 5.4652 4.7094 1.4748 36 1 3.8842 5.4620 -1.0177 37 1 3.3981 5.6951 0.6758 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260687637.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:05 Heat of formation + Delta-G solvation = -34.723894 kcal Electronic energy + Delta-G solvation = -17925.989108 eV Core-core repulsion = 15246.510747 eV Total energy + Delta-G solvation = -2679.478361 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.05332 -38.24990 -35.25245 -32.85514 -32.17522 -29.50269 -28.89780 -26.99783 -26.00132 -24.24706 -22.29636 -21.22846 -20.48517 -18.58537 -17.27676 -16.41516 -15.83179 -15.58255 -15.11160 -14.53000 -13.81245 -13.62737 -13.36224 -13.04532 -12.91249 -12.31571 -12.20516 -11.99012 -11.68057 -11.47743 -11.12134 -10.96593 -10.87473 -10.66669 -10.60163 -10.19577 -10.07972 -9.82720 -9.65115 -8.95463 -8.64667 -8.34883 -8.18861 -7.56284 -5.96016 -4.01749 1.77506 1.89040 3.31170 3.39653 3.43054 3.46711 4.18465 4.45835 5.00348 5.13840 5.18337 5.25269 5.33776 5.42109 5.54643 5.74572 5.77902 5.95687 6.01765 6.18905 6.25432 6.36123 6.43519 6.53649 6.68299 6.70589 6.80019 6.86160 7.01198 7.06647 7.21705 7.22638 7.34811 7.56423 7.70498 7.79046 8.03307 8.14471 8.48757 9.01575 9.62437 11.09591 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.043541 B = 0.005786 C = 0.005224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.914476 B = 4838.135378 C = 5358.764686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.323 6.323 3 C 0.108 3.892 4 C -0.218 4.218 5 C -0.091 4.091 6 C -0.098 4.098 7 C -0.017 4.017 8 C -0.157 4.157 9 C -0.051 4.051 10 H 0.073 0.927 11 C -0.132 4.132 12 C 0.058 3.942 13 H 0.029 0.971 14 C -0.507 4.507 15 H 0.057 0.943 16 C 0.061 3.939 17 N -0.890 5.890 18 Si 0.888 3.112 19 H -0.274 1.274 20 H -0.285 1.285 21 H -0.285 1.285 22 C -0.114 4.114 23 C -0.077 4.077 24 H 0.051 0.949 25 H 0.094 0.906 26 H 0.051 0.949 27 H 0.118 0.882 28 H 0.117 0.883 29 H 0.127 0.873 30 H 0.065 0.935 31 H 0.037 0.963 32 H 0.046 0.954 33 H 0.258 0.742 34 H 0.098 0.902 35 H 0.033 0.967 36 H 0.067 0.933 37 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.025 -6.989 1.672 14.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.237 6.237 3 C 0.064 3.936 4 C -0.237 4.237 5 C -0.109 4.109 6 C -0.098 4.098 7 C -0.017 4.017 8 C -0.175 4.175 9 C -0.069 4.069 10 H 0.091 0.909 11 C -0.189 4.189 12 C 0.039 3.961 13 H 0.047 0.953 14 C -0.545 4.545 15 H 0.075 0.925 16 C -0.140 4.140 17 N -0.529 5.529 18 Si 0.716 3.284 19 H -0.198 1.198 20 H -0.211 1.211 21 H -0.211 1.211 22 C -0.152 4.152 23 C -0.114 4.114 24 H 0.070 0.930 25 H 0.112 0.888 26 H 0.069 0.931 27 H 0.136 0.864 28 H 0.135 0.865 29 H 0.145 0.855 30 H 0.084 0.916 31 H 0.056 0.944 32 H 0.066 0.934 33 H 0.068 0.932 34 H 0.116 0.884 35 H 0.051 0.949 36 H 0.085 0.915 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -11.908 -7.003 1.610 13.908 hybrid contribution 0.532 0.264 0.122 0.607 sum -11.375 -6.739 1.732 13.335 Atomic orbital electron populations 1.22939 0.79262 1.03203 1.01047 1.86031 1.20675 1.27545 1.89455 1.18872 0.92365 0.83675 0.98733 1.20982 0.99145 0.92576 1.10953 1.20955 0.94282 0.96602 0.99071 1.19879 0.92529 0.96132 1.01264 1.19877 0.96912 0.90755 0.94141 1.20537 0.90839 0.98704 1.07466 1.20270 0.87668 0.99470 0.99480 0.90883 1.21790 1.01798 0.96432 0.98907 1.18688 0.94259 0.87541 0.95584 0.95265 1.21229 0.92330 0.98644 1.42289 0.92505 1.24945 0.97999 0.95826 0.95207 1.69885 1.35203 1.03355 1.44471 0.86606 0.86057 0.77990 0.77759 1.19820 1.21150 1.21144 1.21664 0.91095 1.04609 0.97800 1.20545 0.98529 0.91336 1.00984 0.93031 0.88808 0.93050 0.86373 0.86512 0.85536 0.91640 0.94407 0.93438 0.93151 0.88363 0.94850 0.91507 0.92918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 9.82 101.05 0.99 1.30 16 2 O -0.32 -4.77 10.50 -19.44 -0.20 -4.98 16 3 C 0.11 1.78 6.68 -39.32 -0.26 1.51 16 4 C -0.22 -3.32 9.04 -39.54 -0.36 -3.68 16 5 C -0.09 -1.49 9.60 -39.46 -0.38 -1.87 16 6 C -0.10 -1.86 5.74 -104.57 -0.60 -2.46 16 7 C -0.02 -0.33 5.43 -104.63 -0.57 -0.89 16 8 C -0.16 -2.81 8.98 -39.29 -0.35 -3.16 16 9 C -0.05 -1.07 2.18 -91.93 -0.20 -1.27 16 10 H 0.07 1.56 8.11 -51.93 -0.42 1.14 16 11 C -0.13 -2.53 8.57 37.16 0.32 -2.21 16 12 C 0.06 1.40 1.55 -91.74 -0.14 1.26 16 13 H 0.03 0.79 8.08 -51.93 -0.42 0.37 16 14 C -0.51 -13.47 7.91 -34.44 -0.27 -13.74 16 15 H 0.06 1.49 7.30 -52.49 -0.38 1.11 16 16 C 0.06 1.65 5.28 -17.82 -0.09 1.55 16 17 N -0.89 -24.87 11.31 55.43 0.63 -24.24 16 18 Si 0.89 20.96 29.54 -169.99 -5.02 15.94 16 19 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 20 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 21 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 22 C -0.11 -2.65 5.14 -26.70 -0.14 -2.79 16 23 C -0.08 -1.53 5.67 -28.04 -0.16 -1.69 16 24 H 0.05 0.47 7.67 -51.93 -0.40 0.07 16 25 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.05 0.46 7.67 -51.93 -0.40 0.07 16 27 H 0.12 1.45 6.33 -52.49 -0.33 1.12 16 28 H 0.12 1.63 8.05 -52.49 -0.42 1.21 16 29 H 0.13 2.13 6.31 -52.49 -0.33 1.80 16 30 H 0.06 1.29 7.20 -51.93 -0.37 0.92 16 31 H 0.04 0.62 6.35 -51.93 -0.33 0.29 16 32 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 34 H 0.10 2.55 5.92 -51.93 -0.31 2.24 16 35 H 0.03 0.76 8.10 -51.93 -0.42 0.34 16 36 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 37 H 0.05 0.93 8.12 -51.93 -0.42 0.51 16 LS Contribution 292.20 15.07 4.40 4.40 Total: -1.00 -28.41 292.20 -7.77 -36.19 By element: Atomic # 1 Polarization: 6.18 SS G_CDS: -5.36 Total: 0.82 kcal Atomic # 6 Polarization: -25.91 SS G_CDS: -2.21 Total: -28.12 kcal Atomic # 7 Polarization: -24.87 SS G_CDS: 0.63 Total: -24.24 kcal Atomic # 8 Polarization: -4.77 SS G_CDS: -0.20 Total: -4.98 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -28.41 -7.77 -36.19 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260687637.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.461 kcal (2) G-P(sol) polarization free energy of solvation -28.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds