Wall clock time and date at job start Mon Mar 30 2020 05:42:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35909 * 116.99729 * 2 1 4 4 C 1.38765 * 120.17164 * 359.97438 * 3 2 1 5 5 C 1.37828 * 119.70381 * 179.91549 * 4 3 2 6 6 C 1.39036 * 120.61861 * 0.02562 * 5 4 3 7 7 C 1.37639 * 119.76049 * 0.16542 * 6 5 4 8 8 C 1.38426 * 120.17188 * 180.02562 * 3 2 1 9 9 C 1.50641 * 122.54562 * 179.67960 * 7 6 5 10 10 H 1.09006 * 109.25621 * 137.81044 * 9 7 6 11 11 C 1.53000 * 109.22365 * 257.25531 * 9 7 6 12 12 C 1.52735 * 110.59690 * 17.52495 * 9 7 6 13 13 H 1.08997 * 109.68344 * 68.65170 * 12 9 7 14 14 C 1.50699 * 109.68769 * 189.21536 * 12 9 7 15 15 H 1.08005 * 119.99655 * 358.90616 * 14 12 9 16 16 C 1.37870 * 120.00002 * 178.90708 * 14 12 9 17 17 N 1.31515 * 120.00366 * 0.02562 * 16 14 12 18 18 Si 1.86805 * 120.00201 * 179.97438 * 16 14 12 19 19 H 1.48502 * 109.46858 * 60.00071 * 18 16 14 20 20 H 1.48496 * 109.47552 * 180.02562 * 18 16 14 21 21 H 1.48506 * 109.47196 * 300.00857 * 18 16 14 22 22 C 1.53330 * 108.36705 * 308.93404 * 12 9 7 23 23 C 1.50651 * 117.64107 * 180.19621 * 6 5 4 24 24 H 1.09001 * 109.47117 * 60.00036 * 1 2 3 25 25 H 1.09001 * 109.47280 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47212 * 300.00047 * 1 2 3 27 27 H 1.07999 * 120.14645 * 359.88860 * 4 3 2 28 28 H 1.08001 * 119.68401 * 180.02562 * 5 4 3 29 29 H 1.07998 * 119.74514 * 0.02562 * 8 3 2 30 30 H 1.08998 * 109.47817 * 181.08486 * 11 9 7 31 31 H 1.09005 * 109.47158 * 301.09232 * 11 9 7 32 32 H 1.09002 * 109.46691 * 61.08609 * 11 9 7 33 33 H 0.96999 * 120.00158 * 179.97438 * 17 16 14 34 34 H 1.09005 * 109.68248 * 310.22359 * 22 12 9 35 35 H 1.08996 * 109.71720 * 189.68091 * 22 12 9 36 36 H 1.09002 * 109.25247 * 77.24036 * 23 6 5 37 37 H 1.08995 * 109.25248 * 317.77746 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2936 2.3770 -0.0005 5 6 1.9293 3.5999 0.0012 6 6 3.3175 3.6764 0.0030 7 6 4.0654 2.5210 -0.0004 8 6 3.4281 1.2876 -0.0005 9 6 5.5718 2.5307 -0.0059 10 1 5.9387 1.7701 0.6834 11 6 6.0725 2.2161 -1.4170 12 6 6.1019 3.8972 0.4236 13 1 5.8840 4.0603 1.4791 14 6 7.5903 3.9587 0.1963 15 1 8.1123 3.0994 -0.1984 16 6 8.2858 5.1117 0.4923 17 7 7.6504 6.1578 0.9734 18 14 10.1310 5.1878 0.2113 19 1 10.4230 4.9515 -1.2255 20 1 10.6372 6.5269 0.6060 21 1 10.7999 4.1451 1.0302 22 6 5.4058 4.9722 -0.4195 23 6 3.9420 5.0474 0.0095 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 0.2148 2.3264 -0.0028 28 1 1.3434 4.5072 0.0012 29 1 4.0150 0.3811 -0.0014 30 1 7.1624 2.2031 -1.4214 31 1 5.6962 1.2413 -1.7272 32 1 5.7155 2.9800 -2.1078 33 1 8.1398 6.9689 1.1820 34 1 5.4659 4.7069 -1.4751 35 1 5.8865 5.9366 -0.2555 36 1 3.8830 5.4645 1.0148 37 1 3.3982 5.6932 -0.6799 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260687641.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:06 Heat of formation + Delta-G solvation = -32.319195 kcal Electronic energy + Delta-G solvation = -17966.818356 eV Core-core repulsion = 15287.444271 eV Total energy + Delta-G solvation = -2679.374085 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.05840 -38.30744 -35.37664 -32.52628 -32.17375 -29.57063 -28.84160 -26.97103 -26.00453 -24.18826 -22.28407 -21.34701 -21.03763 -18.34000 -16.92654 -16.23830 -15.82063 -15.59182 -15.07537 -14.48027 -14.14023 -13.55099 -13.43192 -13.00986 -12.72975 -12.54686 -12.24283 -12.09326 -11.69165 -11.49518 -11.05419 -11.01086 -10.81223 -10.57062 -10.47061 -10.26158 -10.21103 -9.79514 -9.39701 -8.97615 -8.61704 -8.34130 -8.18537 -7.56783 -5.95036 -4.00704 1.77102 1.88823 3.33970 3.38853 3.41227 3.46340 4.18153 4.46244 5.00097 5.13694 5.18161 5.25588 5.34645 5.42122 5.54759 5.76516 5.77908 5.93992 6.11270 6.17876 6.26905 6.40880 6.44911 6.53069 6.66492 6.72121 6.80026 6.89124 7.00697 7.10509 7.22772 7.25084 7.36073 7.59202 7.70307 7.79617 8.03165 8.16404 8.49637 9.01765 9.63243 11.10588 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.044815 B = 0.005740 C = 0.005273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.645011 B = 4876.732951 C = 5308.438698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.323 6.323 3 C 0.108 3.892 4 C -0.217 4.217 5 C -0.091 4.091 6 C -0.097 4.097 7 C -0.015 4.015 8 C -0.155 4.155 9 C -0.050 4.050 10 H 0.065 0.935 11 C -0.128 4.128 12 C 0.057 3.943 13 H 0.027 0.973 14 C -0.509 4.509 15 H 0.059 0.941 16 C 0.061 3.939 17 N -0.890 5.890 18 Si 0.888 3.112 19 H -0.278 1.278 20 H -0.289 1.289 21 H -0.278 1.278 22 C -0.114 4.114 23 C -0.078 4.078 24 H 0.051 0.949 25 H 0.094 0.906 26 H 0.051 0.949 27 H 0.119 0.881 28 H 0.117 0.883 29 H 0.123 0.877 30 H 0.069 0.931 31 H 0.030 0.970 32 H 0.051 0.949 33 H 0.259 0.741 34 H 0.037 0.963 35 H 0.097 0.903 36 H 0.066 0.934 37 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.013 -6.672 -2.447 13.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.237 6.237 3 C 0.064 3.936 4 C -0.236 4.236 5 C -0.109 4.109 6 C -0.097 4.097 7 C -0.016 4.016 8 C -0.174 4.174 9 C -0.069 4.069 10 H 0.083 0.917 11 C -0.185 4.185 12 C 0.038 3.962 13 H 0.045 0.955 14 C -0.547 4.547 15 H 0.077 0.923 16 C -0.139 4.139 17 N -0.529 5.529 18 Si 0.716 3.284 19 H -0.203 1.203 20 H -0.214 1.214 21 H -0.204 1.204 22 C -0.152 4.152 23 C -0.115 4.115 24 H 0.069 0.931 25 H 0.112 0.888 26 H 0.070 0.930 27 H 0.136 0.864 28 H 0.135 0.865 29 H 0.141 0.859 30 H 0.088 0.912 31 H 0.049 0.951 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.056 0.944 35 H 0.115 0.885 36 H 0.085 0.915 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -11.897 -6.675 -2.386 13.848 hybrid contribution 0.527 0.223 -0.091 0.580 sum -11.369 -6.452 -2.477 13.305 Atomic orbital electron populations 1.22940 0.79254 1.03210 1.01048 1.86033 1.20684 1.27536 1.89456 1.18861 0.92329 0.83687 0.98751 1.20982 0.99148 0.92563 1.10919 1.20981 0.94300 0.96598 0.99051 1.19875 0.92493 0.96144 1.01161 1.19829 0.96917 0.90743 0.94070 1.20461 0.90891 0.98459 1.07547 1.20232 0.87632 1.01609 0.97383 0.91651 1.21786 1.02042 0.98759 0.95914 1.18654 0.94317 0.87830 0.95366 0.95462 1.21208 0.92286 0.98630 1.42555 0.92267 1.24947 0.97932 0.95876 0.95187 1.69868 1.35388 1.03326 1.44342 0.86730 0.86060 0.77037 0.78583 1.20342 1.21424 1.20378 1.21694 0.90953 1.04441 0.98071 1.20555 0.98636 0.91309 1.00963 0.93054 0.88805 0.93018 0.86357 0.86507 0.85906 0.91201 0.95141 0.93012 0.93062 0.94425 0.88502 0.91526 0.92939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 9.82 101.05 0.99 1.30 16 2 O -0.32 -4.78 10.50 -19.45 -0.20 -4.99 16 3 C 0.11 1.78 6.68 -39.32 -0.26 1.52 16 4 C -0.22 -3.31 9.04 -39.54 -0.36 -3.67 16 5 C -0.09 -1.49 9.60 -39.44 -0.38 -1.87 16 6 C -0.10 -1.83 5.74 -104.57 -0.60 -2.43 16 7 C -0.02 -0.30 5.01 -104.65 -0.52 -0.83 16 8 C -0.15 -2.78 9.38 -39.29 -0.37 -3.15 16 9 C -0.05 -1.05 2.37 -91.94 -0.22 -1.27 16 10 H 0.07 1.36 8.13 -51.93 -0.42 0.94 16 11 C -0.13 -2.50 8.53 37.16 0.32 -2.19 16 12 C 0.06 1.38 1.92 -91.74 -0.18 1.20 16 13 H 0.03 0.74 8.10 -51.93 -0.42 0.32 16 14 C -0.51 -13.43 7.82 -34.44 -0.27 -13.70 16 15 H 0.06 1.53 6.11 -52.48 -0.32 1.21 16 16 C 0.06 1.66 5.28 -17.82 -0.09 1.56 16 17 N -0.89 -24.84 11.32 55.43 0.63 -24.22 16 18 Si 0.89 20.91 29.54 -169.99 -5.02 15.89 16 19 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 20 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 21 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 22 C -0.11 -2.63 5.09 -26.70 -0.14 -2.76 16 23 C -0.08 -1.54 5.67 -28.05 -0.16 -1.70 16 24 H 0.05 0.46 7.67 -51.93 -0.40 0.07 16 25 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.05 0.47 7.67 -51.93 -0.40 0.07 16 27 H 0.12 1.45 6.33 -52.49 -0.33 1.12 16 28 H 0.12 1.63 8.05 -52.49 -0.42 1.21 16 29 H 0.12 2.07 8.05 -52.49 -0.42 1.65 16 30 H 0.07 1.41 6.10 -51.93 -0.32 1.10 16 31 H 0.03 0.52 8.04 -51.93 -0.42 0.10 16 32 H 0.05 1.03 6.43 -51.93 -0.33 0.69 16 33 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 34 H 0.04 0.85 6.25 -51.93 -0.32 0.53 16 35 H 0.10 2.50 5.93 -51.93 -0.31 2.19 16 36 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 37 H 0.05 0.93 8.12 -51.93 -0.42 0.51 16 LS Contribution 290.19 15.07 4.37 4.37 Total: -1.00 -28.27 290.19 -7.70 -35.97 By element: Atomic # 1 Polarization: 6.19 SS G_CDS: -5.24 Total: 0.95 kcal Atomic # 6 Polarization: -25.75 SS G_CDS: -2.24 Total: -27.98 kcal Atomic # 7 Polarization: -24.84 SS G_CDS: 0.63 Total: -24.22 kcal Atomic # 8 Polarization: -4.78 SS G_CDS: -0.20 Total: -4.99 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -28.27 -7.70 -35.97 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260687641.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.648 kcal (2) G-P(sol) polarization free energy of solvation -28.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds