Wall clock time and date at job start Mon Mar 30 2020 05:42:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35909 * 116.99729 * 2 1 4 4 C 1.38765 * 120.17164 * 359.97438 * 3 2 1 5 5 C 1.37828 * 119.70381 * 179.91549 * 4 3 2 6 6 C 1.39036 * 120.61861 * 0.02562 * 5 4 3 7 7 C 1.37639 * 119.76049 * 0.16542 * 6 5 4 8 8 C 1.38426 * 120.17188 * 180.02562 * 3 2 1 9 9 C 1.50641 * 122.54562 * 179.67960 * 7 6 5 10 10 H 1.09006 * 109.25621 * 137.81044 * 9 7 6 11 11 C 1.53000 * 109.22365 * 257.25531 * 9 7 6 12 12 C 1.52735 * 110.59690 * 17.52495 * 9 7 6 13 13 H 1.08997 * 109.68344 * 68.65170 * 12 9 7 14 14 C 1.50699 * 109.68769 * 189.21536 * 12 9 7 15 15 H 1.08005 * 119.99655 * 358.90616 * 14 12 9 16 16 C 1.37870 * 120.00002 * 178.90708 * 14 12 9 17 17 N 1.31515 * 120.00366 * 0.02562 * 16 14 12 18 18 Si 1.86805 * 120.00201 * 179.97438 * 16 14 12 19 19 H 1.48502 * 109.46858 * 60.00071 * 18 16 14 20 20 H 1.48496 * 109.47552 * 180.02562 * 18 16 14 21 21 H 1.48506 * 109.47196 * 300.00857 * 18 16 14 22 22 C 1.53330 * 108.36705 * 308.93404 * 12 9 7 23 23 C 1.50651 * 117.64107 * 180.19621 * 6 5 4 24 24 H 1.09001 * 109.47117 * 60.00036 * 1 2 3 25 25 H 1.09001 * 109.47280 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47212 * 300.00047 * 1 2 3 27 27 H 1.07999 * 120.14645 * 359.88860 * 4 3 2 28 28 H 1.08001 * 119.68401 * 180.02562 * 5 4 3 29 29 H 1.07998 * 119.74514 * 0.02562 * 8 3 2 30 30 H 1.08998 * 109.47817 * 181.08486 * 11 9 7 31 31 H 1.09005 * 109.47158 * 301.09232 * 11 9 7 32 32 H 1.09002 * 109.46691 * 61.08609 * 11 9 7 33 33 H 0.96999 * 120.00158 * 179.97438 * 17 16 14 34 34 H 1.09005 * 109.68248 * 310.22359 * 22 12 9 35 35 H 1.08996 * 109.71720 * 189.68091 * 22 12 9 36 36 H 1.09002 * 109.25247 * 77.24036 * 23 6 5 37 37 H 1.08995 * 109.25248 * 317.77746 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2936 2.3770 -0.0005 5 6 1.9293 3.5999 0.0012 6 6 3.3175 3.6764 0.0030 7 6 4.0654 2.5210 -0.0004 8 6 3.4281 1.2876 -0.0005 9 6 5.5718 2.5307 -0.0059 10 1 5.9387 1.7701 0.6834 11 6 6.0725 2.2161 -1.4170 12 6 6.1019 3.8972 0.4236 13 1 5.8840 4.0603 1.4791 14 6 7.5903 3.9587 0.1963 15 1 8.1123 3.0994 -0.1984 16 6 8.2858 5.1117 0.4923 17 7 7.6504 6.1578 0.9734 18 14 10.1310 5.1878 0.2113 19 1 10.4230 4.9515 -1.2255 20 1 10.6372 6.5269 0.6060 21 1 10.7999 4.1451 1.0302 22 6 5.4058 4.9722 -0.4195 23 6 3.9420 5.0474 0.0095 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 0.2148 2.3264 -0.0028 28 1 1.3434 4.5072 0.0012 29 1 4.0150 0.3811 -0.0014 30 1 7.1624 2.2031 -1.4214 31 1 5.6962 1.2413 -1.7272 32 1 5.7155 2.9800 -2.1078 33 1 8.1398 6.9689 1.1820 34 1 5.4659 4.7069 -1.4751 35 1 5.8865 5.9366 -0.2555 36 1 3.8830 5.4645 1.0148 37 1 3.3982 5.6932 -0.6799 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260687641.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:06 Heat of formation + Delta-G solvation = -46.702997 kcal Electronic energy + Delta-G solvation = -17967.442084 eV Core-core repulsion = 15287.444271 eV Total energy + Delta-G solvation = -2679.997814 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.37569 -39.63864 -36.91543 -34.26039 -33.87473 -31.00033 -30.27663 -28.13248 -27.65605 -25.91956 -23.75324 -22.89556 -22.55144 -19.80731 -18.26609 -18.17282 -17.21853 -16.59806 -16.52670 -16.27942 -15.59541 -15.15130 -14.81496 -14.35232 -14.28594 -14.19028 -13.74677 -13.41484 -13.09043 -12.88834 -12.79883 -12.61748 -12.36342 -12.29563 -12.16814 -11.75963 -11.68809 -11.46174 -11.23204 -10.78680 -10.50698 -10.30001 -9.62092 -8.88089 -8.01667 -6.13898 0.46136 0.55709 1.45284 1.45713 1.52908 2.42742 2.48909 2.84650 3.25368 3.90189 3.95654 4.12523 4.27345 4.37594 4.41057 4.44688 4.46802 4.51738 4.69990 4.73630 4.81047 4.83699 4.88210 5.06926 5.12026 5.26720 5.27267 5.36893 5.41168 5.45186 5.49788 5.59710 5.74290 5.91031 6.00161 6.05642 6.22293 6.47634 6.55406 6.95959 7.52882 9.02690 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.044815 B = 0.005740 C = 0.005273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.645011 B = 4876.732951 C = 5308.438698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.337 6.337 3 C 0.112 3.888 4 C -0.208 4.208 5 C -0.085 4.085 6 C -0.122 4.122 7 C -0.035 4.035 8 C -0.169 4.169 9 C -0.046 4.046 10 H 0.058 0.942 11 C -0.119 4.119 12 C 0.056 3.944 13 H -0.012 1.012 14 C -0.523 4.523 15 H 0.061 0.939 16 C 0.013 3.987 17 N -0.917 5.917 18 Si 0.948 3.052 19 H -0.271 1.271 20 H -0.287 1.287 21 H -0.274 1.274 22 C -0.106 4.106 23 C -0.069 4.069 24 H 0.064 0.936 25 H 0.119 0.881 26 H 0.063 0.937 27 H 0.156 0.844 28 H 0.144 0.856 29 H 0.125 0.875 30 H 0.057 0.943 31 H 0.054 0.946 32 H 0.045 0.955 33 H 0.258 0.742 34 H 0.036 0.964 35 H 0.065 0.935 36 H 0.054 0.946 37 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.003 -7.768 -3.198 16.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.252 6.252 3 C 0.067 3.933 4 C -0.226 4.226 5 C -0.103 4.103 6 C -0.122 4.122 7 C -0.035 4.035 8 C -0.188 4.188 9 C -0.064 4.064 10 H 0.076 0.924 11 C -0.176 4.176 12 C 0.037 3.963 13 H 0.006 0.994 14 C -0.561 4.561 15 H 0.079 0.921 16 C -0.185 4.185 17 N -0.557 5.557 18 Si 0.774 3.226 19 H -0.196 1.196 20 H -0.213 1.213 21 H -0.200 1.200 22 C -0.144 4.144 23 C -0.106 4.106 24 H 0.083 0.917 25 H 0.137 0.863 26 H 0.082 0.918 27 H 0.173 0.827 28 H 0.162 0.838 29 H 0.143 0.857 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.055 0.945 35 H 0.084 0.916 36 H 0.073 0.927 37 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -13.897 -7.789 -3.141 16.237 hybrid contribution 1.026 0.479 0.170 1.145 sum -12.870 -7.310 -2.972 15.097 Atomic orbital electron populations 1.23329 0.76527 1.05463 1.02231 1.86027 1.23459 1.26655 1.89015 1.18937 0.91990 0.84916 0.97437 1.21348 1.00953 0.91422 1.08881 1.21226 0.93103 0.98363 0.97639 1.19858 0.94004 0.95023 1.03323 1.19674 0.95747 0.91958 0.96098 1.20459 0.92138 0.97786 1.08391 1.20060 0.89438 0.99067 0.97879 0.92397 1.21681 1.01172 0.99828 0.94923 1.18562 0.93851 0.90536 0.93308 0.99395 1.21575 0.93672 0.98671 1.42211 0.92133 1.25682 1.02019 0.95657 0.95154 1.70017 1.36772 1.03682 1.45221 0.85765 0.81165 0.76931 0.78694 1.19605 1.21301 1.19954 1.21481 0.93115 1.02134 0.97696 1.20396 0.96628 0.92925 1.00671 0.91695 0.86293 0.91834 0.82679 0.83802 0.85667 0.92385 0.92727 0.93644 0.93258 0.94521 0.91637 0.92750 0.90705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 9.82 113.37 1.11 1.41 16 2 O -0.34 -8.93 10.50 -92.53 -0.97 -9.90 16 3 C 0.11 3.40 6.68 22.44 0.15 3.55 16 4 C -0.21 -5.54 9.04 22.30 0.20 -5.34 16 5 C -0.09 -2.55 9.60 22.36 0.21 -2.33 16 6 C -0.12 -4.54 5.74 -19.83 -0.11 -4.65 16 7 C -0.03 -1.35 5.01 -19.88 -0.10 -1.45 16 8 C -0.17 -5.88 9.38 22.46 0.21 -5.67 16 9 C -0.05 -1.98 2.37 -11.65 -0.03 -2.01 16 10 H 0.06 2.50 8.13 -2.38 -0.02 2.48 16 11 C -0.12 -4.68 8.53 71.98 0.61 -4.07 16 12 C 0.06 2.84 1.92 -11.52 -0.02 2.82 16 13 H -0.01 -0.70 8.10 -2.39 -0.02 -0.72 16 14 C -0.52 -28.52 7.82 25.60 0.20 -28.32 16 15 H 0.06 3.20 6.11 -2.91 -0.02 3.19 16 16 C 0.01 0.72 5.28 84.65 0.45 1.17 16 17 N -0.92 -52.96 11.32 21.44 0.24 -52.72 16 18 Si 0.95 43.62 29.54 68.60 2.03 45.64 16 19 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 20 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 21 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 22 C -0.11 -5.08 5.09 30.61 0.16 -4.93 16 23 C -0.07 -2.76 5.67 29.74 0.17 -2.60 16 24 H 0.06 0.87 7.67 -2.39 -0.02 0.85 16 25 H 0.12 1.28 8.14 -2.39 -0.02 1.26 16 26 H 0.06 0.87 7.67 -2.39 -0.02 0.85 16 27 H 0.16 2.96 6.33 -2.91 -0.02 2.94 16 28 H 0.14 3.46 8.05 -2.91 -0.02 3.43 16 29 H 0.13 4.15 8.05 -2.91 -0.02 4.13 16 30 H 0.06 2.37 6.10 -2.39 -0.01 2.36 16 31 H 0.05 1.85 8.04 -2.38 -0.02 1.83 16 32 H 0.04 1.81 6.43 -2.39 -0.02 1.80 16 33 H 0.26 14.30 8.31 -92.71 -0.77 13.53 16 34 H 0.04 1.71 6.25 -2.38 -0.01 1.69 16 35 H 0.07 3.53 5.93 -2.39 -0.01 3.52 16 36 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 37 H 0.07 2.59 8.12 -2.39 -0.02 2.57 16 Total: -1.00 -62.39 290.19 5.57 -56.82 By element: Atomic # 1 Polarization: 11.52 SS G_CDS: 1.06 Total: 12.58 kcal Atomic # 6 Polarization: -55.64 SS G_CDS: 3.21 Total: -52.42 kcal Atomic # 7 Polarization: -52.96 SS G_CDS: 0.24 Total: -52.72 kcal Atomic # 8 Polarization: -8.93 SS G_CDS: -0.97 Total: -9.90 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.64 kcal Total: -62.39 5.57 -56.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260687641.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.119 kcal (2) G-P(sol) polarization free energy of solvation -62.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds