Wall clock time and date at job start Mon Mar 30 2020 05:42:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35902 * 116.99847 * 2 1 4 4 C 1.38479 * 119.78710 * 0.02562 * 3 2 1 5 5 C 1.38131 * 119.70911 * 179.97438 * 4 3 2 6 6 C 1.38006 * 119.83372 * 359.88260 * 5 4 3 7 7 C 1.38912 * 120.66263 * 0.06037 * 6 5 4 8 8 C 1.37610 * 119.71661 * 0.16615 * 7 6 5 9 9 C 1.50620 * 122.58507 * 179.32136 * 8 7 6 10 10 H 1.08999 * 109.25430 * 138.03179 * 9 8 7 11 11 C 1.52997 * 109.25419 * 257.49128 * 9 8 7 12 12 C 1.52730 * 110.59337 * 17.77765 * 9 8 7 13 13 H 1.09005 * 109.68433 * 68.63271 * 12 9 8 14 14 C 1.50699 * 109.68588 * 189.18994 * 12 9 8 15 15 H 1.07998 * 119.99828 * 94.98985 * 14 12 9 16 16 C 1.37877 * 120.00093 * 274.99231 * 14 12 9 17 17 N 1.31514 * 120.00295 * 185.98536 * 16 14 12 18 18 Si 1.86805 * 119.99845 * 5.98690 * 16 14 12 19 19 H 1.48492 * 109.47119 * 84.83239 * 18 16 14 20 20 H 1.48503 * 109.46910 * 204.83324 * 18 16 14 21 21 H 1.48501 * 109.46938 * 324.82903 * 18 16 14 22 22 C 1.53333 * 108.37518 * 308.90918 * 12 9 8 23 23 C 1.50643 * 117.73062 * 180.21463 * 7 6 5 24 24 H 1.09000 * 109.46689 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47119 * 299.99673 * 1 2 3 26 26 H 1.09002 * 109.47464 * 59.99651 * 1 2 3 27 27 H 1.07993 * 120.14458 * 359.95587 * 4 3 2 28 28 H 1.07998 * 120.08275 * 179.86086 * 5 4 3 29 29 H 1.07997 * 119.66850 * 180.02562 * 6 5 4 30 30 H 1.09001 * 109.47428 * 60.00077 * 11 9 8 31 31 H 1.09006 * 109.47524 * 180.02562 * 11 9 8 32 32 H 1.09001 * 109.47202 * 300.00221 * 11 9 8 33 33 H 0.97001 * 120.00121 * 179.97438 * 17 16 14 34 34 H 1.08995 * 109.68219 * 310.13009 * 22 12 9 35 35 H 1.09007 * 109.67841 * 189.57277 * 22 12 9 36 36 H 1.08999 * 109.25701 * 318.02089 * 23 7 6 37 37 H 1.09010 * 109.25263 * 77.45189 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2874 2.3695 0.0005 5 6 1.9161 3.5994 0.0011 6 6 3.2946 3.6658 0.0035 7 6 4.0597 2.5063 0.0042 8 6 3.4379 1.2787 -0.0010 9 6 4.2035 -0.0183 -0.0157 10 1 3.7317 -0.7219 0.6702 11 6 4.1815 -0.6012 -1.4301 12 6 5.6517 0.2079 0.4133 13 1 5.6846 0.4719 1.4704 14 6 6.4528 -1.0466 0.1776 15 1 7.0148 -1.1645 -0.7371 16 6 6.4683 -2.0437 1.1297 17 7 7.2579 -3.0846 0.9791 18 14 5.3675 -1.9164 2.6336 19 1 4.0181 -2.4420 2.3052 20 1 5.9519 -2.7113 3.7434 21 1 5.2577 -0.4945 3.0476 22 6 6.2303 1.3550 -0.4238 23 6 5.5586 2.6557 0.0119 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 0.2090 2.3116 0.0002 28 1 1.3304 4.5068 -0.0008 29 1 3.7834 4.6288 0.0044 30 1 4.6440 0.1038 -2.1209 31 1 4.7344 -1.5405 -1.4447 32 1 3.1500 -0.7824 -1.7324 33 1 7.2691 -3.7859 1.6491 34 1 6.0313 1.1751 -1.4802 35 1 7.3055 1.4238 -0.2586 36 1 5.8439 3.4543 -0.6729 37 1 5.8893 2.9111 1.0188 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260688953.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:12 Heat of formation + Delta-G solvation = -30.197021 kcal Electronic energy + Delta-G solvation = -18505.866311 eV Core-core repulsion = 15826.584250 eV Total energy + Delta-G solvation = -2679.282061 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.26788 -37.94568 -35.90554 -32.49198 -31.97726 -30.05201 -28.72560 -27.12351 -26.43562 -24.03174 -22.41294 -21.29418 -21.08412 -17.88897 -17.37738 -16.62524 -15.96637 -15.52359 -15.19514 -14.38160 -14.34868 -13.56545 -13.42052 -13.17522 -12.90684 -12.51377 -12.39694 -12.07983 -11.66672 -11.47538 -11.33232 -11.19298 -10.84768 -10.82971 -10.57481 -10.39168 -10.09393 -9.73361 -9.33176 -9.09311 -8.83985 -8.42108 -8.19151 -7.73164 -6.00851 -3.97654 1.68379 1.78135 3.36793 3.43178 3.47223 3.55662 4.07717 4.49707 5.01460 5.05566 5.21238 5.22551 5.32330 5.35113 5.53676 5.60824 5.66421 5.79014 5.81378 5.95717 6.21714 6.28138 6.34737 6.40416 6.53804 6.65881 6.72522 6.78834 6.82570 6.86905 6.94229 7.09487 7.32627 7.40293 7.50828 7.55503 7.73250 7.88077 8.61008 9.04538 9.63398 11.12156 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.022724 B = 0.009492 C = 0.007815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.901824 B = 2949.242477 C = 3581.955414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.307 6.307 3 C 0.121 3.879 4 C -0.221 4.221 5 C -0.097 4.097 6 C -0.162 4.162 7 C -0.038 4.038 8 C -0.083 4.083 9 C -0.044 4.044 10 H 0.065 0.935 11 C -0.120 4.120 12 C 0.012 3.988 13 H 0.036 0.964 14 C -0.499 4.499 15 H 0.074 0.926 16 C 0.073 3.927 17 N -0.903 5.903 18 Si 0.867 3.133 19 H -0.274 1.274 20 H -0.292 1.292 21 H -0.263 1.263 22 C -0.105 4.105 23 C -0.083 4.083 24 H 0.096 0.904 25 H 0.050 0.950 26 H 0.051 0.949 27 H 0.120 0.880 28 H 0.116 0.884 29 H 0.116 0.884 30 H 0.041 0.959 31 H 0.076 0.924 32 H 0.031 0.969 33 H 0.262 0.738 34 H 0.057 0.943 35 H 0.062 0.938 36 H 0.065 0.935 37 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.765 11.004 -1.879 16.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.221 6.221 3 C 0.076 3.924 4 C -0.240 4.240 5 C -0.115 4.115 6 C -0.180 4.180 7 C -0.038 4.038 8 C -0.084 4.084 9 C -0.063 4.063 10 H 0.083 0.917 11 C -0.177 4.177 12 C -0.007 4.007 13 H 0.054 0.946 14 C -0.537 4.537 15 H 0.093 0.907 16 C -0.129 4.129 17 N -0.541 5.541 18 Si 0.695 3.305 19 H -0.200 1.200 20 H -0.219 1.219 21 H -0.188 1.188 22 C -0.143 4.143 23 C -0.119 4.119 24 H 0.114 0.886 25 H 0.068 0.932 26 H 0.069 0.931 27 H 0.138 0.862 28 H 0.134 0.866 29 H 0.134 0.866 30 H 0.060 0.940 31 H 0.095 0.905 32 H 0.050 0.950 33 H 0.072 0.928 34 H 0.076 0.924 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -11.623 10.624 -1.798 15.849 hybrid contribution -1.121 0.154 0.916 1.456 sum -12.744 10.778 -0.882 16.714 Atomic orbital electron populations 1.22987 0.79491 1.03492 1.00751 1.86172 1.20309 1.27010 1.88561 1.19148 0.92166 0.83891 0.97220 1.21029 0.99313 0.92633 1.11021 1.20663 0.94523 0.96498 0.99806 1.21028 0.93682 0.97796 1.05539 1.19581 0.96191 0.91288 0.96710 1.19554 0.89970 0.96762 1.02099 1.20280 0.97257 0.90615 0.98165 0.91677 1.21642 0.99284 1.01834 0.94984 1.19324 0.90732 0.94935 0.95690 0.94553 1.20927 1.27959 0.99569 1.05224 0.90743 1.24982 0.94839 0.95382 0.97662 1.69910 1.37879 1.10410 1.35894 0.87044 0.81574 0.78572 0.83282 1.19955 1.21895 1.18798 1.21590 0.99298 0.93197 1.00194 1.20601 0.90178 0.99702 1.01467 0.88597 0.93155 0.93069 0.86209 0.86575 0.86573 0.93984 0.90539 0.94950 0.92813 0.92398 0.91889 0.91667 0.90996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 9.81 101.05 0.99 1.33 16 2 O -0.31 -5.40 8.90 -19.43 -0.17 -5.57 16 3 C 0.12 2.17 6.53 -39.08 -0.26 1.92 16 4 C -0.22 -3.31 9.02 -39.53 -0.36 -3.67 16 5 C -0.10 -1.36 10.04 -39.71 -0.40 -1.76 16 6 C -0.16 -2.45 9.60 -39.42 -0.38 -2.83 16 7 C -0.04 -0.67 5.74 -104.63 -0.60 -1.27 16 8 C -0.08 -1.64 5.03 -104.47 -0.53 -2.17 16 9 C -0.04 -0.99 1.81 -91.95 -0.17 -1.15 16 10 H 0.07 1.58 5.87 -51.93 -0.30 1.28 16 11 C -0.12 -2.56 8.51 37.16 0.32 -2.24 16 12 C 0.01 0.28 1.47 -91.74 -0.13 0.15 16 13 H 0.04 0.90 5.77 -51.93 -0.30 0.60 16 14 C -0.50 -13.69 7.16 -34.44 -0.25 -13.94 16 15 H 0.07 2.20 8.05 -52.49 -0.42 1.78 16 16 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 17 N -0.90 -27.52 13.96 55.43 0.77 -26.75 16 18 Si 0.87 22.08 25.83 -169.99 -4.39 17.69 16 19 H -0.27 -6.93 7.11 56.52 0.40 -6.53 16 20 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 21 H -0.26 -6.51 6.15 56.52 0.35 -6.17 16 22 C -0.11 -2.10 5.22 -26.70 -0.14 -2.24 16 23 C -0.08 -1.40 5.67 -28.05 -0.16 -1.56 16 24 H 0.10 0.97 8.14 -51.93 -0.42 0.54 16 25 H 0.05 0.54 7.65 -51.93 -0.40 0.14 16 26 H 0.05 0.53 7.65 -51.93 -0.40 0.13 16 27 H 0.12 1.46 6.27 -52.49 -0.33 1.13 16 28 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 29 H 0.12 1.46 8.05 -52.49 -0.42 1.04 16 30 H 0.04 0.84 6.47 -51.93 -0.34 0.50 16 31 H 0.08 1.78 6.91 -51.93 -0.36 1.42 16 32 H 0.03 0.63 7.47 -51.93 -0.39 0.25 16 33 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 34 H 0.06 1.15 6.27 -51.93 -0.33 0.82 16 35 H 0.06 1.25 8.12 -51.93 -0.42 0.83 16 36 H 0.06 0.94 8.12 -51.93 -0.42 0.51 16 37 H 0.07 1.18 8.14 -51.92 -0.42 0.75 16 LS Contribution 285.46 15.07 4.30 4.30 Total: -1.00 -30.75 285.46 -6.92 -37.68 By element: Atomic # 1 Polarization: 5.37 SS G_CDS: -5.28 Total: 0.09 kcal Atomic # 6 Polarization: -25.29 SS G_CDS: -2.15 Total: -27.44 kcal Atomic # 7 Polarization: -27.52 SS G_CDS: 0.77 Total: -26.75 kcal Atomic # 8 Polarization: -5.40 SS G_CDS: -0.17 Total: -5.57 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -4.39 Total: 17.69 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -30.75 -6.92 -37.68 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260688953.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.480 kcal (2) G-P(sol) polarization free energy of solvation -30.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds