Wall clock time and date at job start Mon Mar 30 2020 06:07:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30692 * 1 3 3 Si 1.86803 * 119.99917 * 2 1 4 4 H 1.48497 * 109.47316 * 264.66561 * 3 2 1 5 5 H 1.48505 * 109.46831 * 144.66380 * 3 2 1 6 6 H 1.48500 * 109.47022 * 24.66818 * 3 2 1 7 7 C 1.40229 * 119.99870 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00121 * 6.28993 * 7 2 1 9 9 C 1.39999 * 120.00131 * 186.28862 * 7 2 1 10 10 N 1.32984 * 125.96252 * 35.92137 * 9 7 2 11 11 C 1.32757 * 109.22354 * 179.82985 * 10 9 7 12 12 C 1.36210 * 108.61901 * 0.43761 * 11 10 9 13 13 C 1.50707 * 126.40249 * 179.71589 * 12 11 10 14 14 C 1.54266 * 110.03441 * 82.92772 * 13 12 11 15 15 C 1.54965 * 104.16109 * 217.14120 * 14 13 12 16 16 C 1.54886 * 102.77855 * 37.88502 * 15 14 13 17 17 C 1.53876 * 110.02920 * 325.71408 * 13 12 11 18 18 N 1.36408 * 107.19833 * 359.73596 * 12 11 10 19 19 C 1.46505 * 126.55988 * 180.02562 * 18 12 11 20 20 C 1.53004 * 117.49922 * 196.77536 * 19 18 12 21 21 C 1.52998 * 117.49952 * 128.11510 * 19 18 12 22 22 H 0.97002 * 120.00133 * 0.02562 * 1 2 3 23 23 H 1.07998 * 125.68573 * 180.18958 * 11 10 9 24 24 H 1.08997 * 110.01941 * 204.32264 * 13 12 11 25 25 H 1.09005 * 110.48500 * 335.78720 * 14 13 12 26 26 H 1.08997 * 110.48169 * 98.42653 * 14 13 12 27 27 H 1.08998 * 110.71181 * 279.57042 * 15 14 13 28 28 H 1.08997 * 110.76375 * 156.22614 * 15 14 13 29 29 H 1.08999 * 110.48775 * 203.40367 * 16 15 14 30 30 H 1.09006 * 110.59767 * 80.81934 * 16 15 14 31 31 H 1.09006 * 110.03372 * 238.56772 * 17 13 12 32 32 H 1.08998 * 110.03609 * 359.97438 * 17 13 12 33 33 H 1.09000 * 115.54474 * 342.44143 * 19 18 12 34 34 H 1.09001 * 117.49963 * 0.02562 * 20 19 18 35 35 H 1.08999 * 117.49809 * 145.01246 * 20 19 18 36 36 H 1.09004 * 117.49617 * 214.97712 * 21 19 18 37 37 H 1.08993 * 117.50105 * 359.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2409 1.6178 0.0000 4 1 2.6011 1.9814 -1.3940 5 1 3.4776 1.4753 0.8098 6 1 1.3865 2.6826 0.5843 7 6 2.0080 -1.2144 0.0005 8 1 1.4729 -2.1470 -0.1015 9 6 3.4017 -1.2181 0.1333 10 7 4.1170 -0.3840 0.8825 11 6 5.4044 -0.6867 0.7662 12 6 5.5280 -1.7396 -0.0891 13 6 6.8138 -2.4031 -0.5108 14 6 7.2494 -3.4341 0.5508 15 6 8.7940 -3.3136 0.5849 16 6 9.0228 -1.7916 0.4113 17 6 7.9409 -1.3593 -0.5998 18 7 4.2706 -2.0811 -0.4929 19 6 3.9137 -3.1609 -1.4164 20 6 2.5146 -3.1281 -2.0348 21 6 2.8514 -4.1614 -0.9568 22 1 -0.4850 0.8401 -0.0004 23 1 6.2181 -0.1798 1.2633 24 1 6.6819 -2.8932 -1.4754 25 1 6.8258 -3.1827 1.5231 26 1 6.9508 -4.4388 0.2517 27 1 9.2423 -3.8681 -0.2394 28 1 9.1873 -3.6567 1.5418 29 1 10.0181 -1.5986 0.0110 30 1 8.8871 -1.2727 1.3603 31 1 8.3566 -1.3435 -1.6074 32 1 7.5579 -0.3729 -0.3384 33 1 4.7282 -3.5396 -2.0339 34 1 1.8598 -2.3029 -1.7548 35 1 2.4086 -3.4856 -3.0590 36 1 2.9667 -5.1984 -1.2723 37 1 2.4183 -4.0165 0.0329 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260720739.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:07:13 Heat of formation + Delta-G solvation = 72.358025 kcal Electronic energy + Delta-G solvation = -18272.111308 eV Core-core repulsion = 15629.569119 eV Total energy + Delta-G solvation = -2642.542189 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.63740 -37.60365 -36.28901 -33.27854 -30.93643 -29.89756 -28.42024 -27.87104 -24.24707 -22.26740 -21.81226 -20.98213 -20.44307 -19.33831 -18.26683 -16.97357 -16.09723 -15.27243 -14.91371 -14.66624 -13.98394 -13.69965 -13.20927 -13.07812 -12.90667 -12.43327 -11.90334 -11.65771 -11.15121 -11.00962 -10.93119 -10.89752 -10.82686 -10.74066 -10.69034 -10.46773 -10.32455 -9.99722 -9.91825 -9.83601 -9.10369 -8.09522 -7.62162 -7.01205 -6.60757 -4.39240 3.10578 3.39240 3.47446 3.80562 3.93948 4.36873 4.47469 4.59047 4.87323 4.95605 4.98750 5.19782 5.31055 5.41545 5.55539 5.60812 5.66896 5.80841 5.82941 5.83751 5.97548 6.06697 6.08951 6.14682 6.22173 6.28211 6.31301 6.50031 6.54960 6.58845 6.60392 6.98129 7.05075 7.21373 7.62336 7.96615 8.21068 8.37650 8.85270 9.09017 9.73852 10.38273 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.025674 B = 0.008395 C = 0.006783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.353909 B = 3334.403568 C = 4126.873823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.831 5.831 2 C 0.110 3.890 3 Si 0.860 3.140 4 H -0.285 1.285 5 H -0.169 1.169 6 H -0.296 1.296 7 C -0.468 4.468 8 H 0.100 0.900 9 C 0.363 3.637 10 N -0.556 5.556 11 C -0.011 4.011 12 C -0.103 4.103 13 C 0.003 3.997 14 C -0.114 4.114 15 C -0.124 4.124 16 C -0.122 4.122 17 C -0.115 4.115 18 N -0.456 5.456 19 C 0.077 3.923 20 C -0.192 4.192 21 C -0.190 4.190 22 H 0.281 0.719 23 H 0.139 0.861 24 H 0.059 0.941 25 H 0.069 0.931 26 H 0.056 0.944 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.058 0.942 30 H 0.065 0.935 31 H 0.057 0.943 32 H 0.073 0.927 33 H 0.117 0.883 34 H 0.149 0.851 35 H 0.087 0.913 36 H 0.090 0.910 37 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.026 -5.639 -2.709 13.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.460 5.460 2 C -0.109 4.109 3 Si 0.685 3.315 4 H -0.211 1.211 5 H -0.090 1.090 6 H -0.223 1.223 7 C -0.507 4.507 8 H 0.118 0.882 9 C 0.118 3.882 10 N -0.279 5.279 11 C -0.162 4.162 12 C -0.216 4.216 13 C -0.017 4.017 14 C -0.152 4.152 15 C -0.162 4.162 16 C -0.160 4.160 17 C -0.153 4.153 18 N -0.142 5.142 19 C -0.029 4.029 20 C -0.229 4.229 21 C -0.229 4.229 22 H 0.092 0.908 23 H 0.156 0.844 24 H 0.077 0.923 25 H 0.088 0.912 26 H 0.075 0.925 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.084 0.916 31 H 0.076 0.924 32 H 0.092 0.908 33 H 0.134 0.866 34 H 0.166 0.834 35 H 0.105 0.895 36 H 0.108 0.892 37 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 11.524 -5.026 -2.295 12.780 hybrid contribution 0.457 -0.095 -0.676 0.821 sum 11.981 -5.121 -2.971 13.364 Atomic orbital electron populations 1.69525 1.07914 1.29828 1.38704 1.25663 0.94496 1.01000 0.89733 0.87108 0.85040 0.78968 0.80385 1.21139 1.09021 1.22279 1.17977 0.86034 0.95783 1.50896 0.88192 1.20325 0.92075 0.85660 0.90098 1.71223 1.02660 1.27952 1.26073 1.21660 0.95044 0.97710 1.01770 1.20540 0.85232 1.04789 1.10989 1.19815 0.90334 0.94318 0.97235 1.22492 0.94548 0.98246 0.99920 1.22503 0.96480 0.96349 1.00862 1.22336 0.98135 0.95917 0.99595 1.22211 0.94827 0.99692 0.98580 1.45058 1.05929 1.27573 1.35597 1.21370 0.93149 0.91916 0.96490 1.23968 0.98637 1.03475 0.96849 1.23303 1.03786 0.94780 1.01008 0.90847 0.84367 0.92285 0.91178 0.92513 0.92041 0.92061 0.92307 0.91644 0.92432 0.90802 0.86577 0.83393 0.89458 0.89187 0.88139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -23.01 13.92 55.56 0.77 -22.24 16 2 C 0.11 3.01 5.52 -17.29 -0.10 2.91 16 3 Si 0.86 21.51 27.31 -169.99 -4.64 16.87 16 4 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 5 H -0.17 -4.32 5.05 56.52 0.29 -4.04 16 6 H -0.30 -7.26 7.11 56.52 0.40 -6.86 16 7 C -0.47 -12.67 7.21 -38.17 -0.28 -12.94 16 8 H 0.10 2.74 5.39 -52.49 -0.28 2.46 16 9 C 0.36 9.40 6.41 -155.59 -1.00 8.41 16 10 N -0.56 -14.49 7.24 -12.73 -0.09 -14.58 16 11 C -0.01 -0.25 10.62 -17.88 -0.19 -0.44 16 12 C -0.10 -2.14 5.76 -81.28 -0.47 -2.61 16 13 C 0.00 0.05 3.19 -90.65 -0.29 -0.24 16 14 C -0.11 -1.64 6.36 -25.03 -0.16 -1.80 16 15 C -0.12 -1.45 6.91 -24.70 -0.17 -1.62 16 16 C -0.12 -1.45 6.83 -25.08 -0.17 -1.62 16 17 C -0.12 -1.62 6.29 -25.61 -0.16 -1.78 16 18 N -0.46 -10.26 3.16 -104.36 -0.33 -10.59 16 19 C 0.08 1.45 6.68 -67.93 -0.45 1.00 16 20 C -0.19 -3.58 9.56 -26.69 -0.26 -3.83 16 21 C -0.19 -3.36 9.83 -26.69 -0.26 -3.62 16 22 H 0.28 7.25 8.29 -40.82 -0.34 6.91 16 23 H 0.14 2.77 7.52 -52.49 -0.39 2.37 16 24 H 0.06 0.92 7.16 -51.93 -0.37 0.55 16 25 H 0.07 1.13 7.85 -51.93 -0.41 0.73 16 26 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.07 1.14 6.39 -51.93 -0.33 0.81 16 33 H 0.12 1.89 7.22 -51.93 -0.38 1.52 16 34 H 0.15 3.33 4.69 -51.93 -0.24 3.08 16 35 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 36 H 0.09 1.30 8.14 -51.93 -0.42 0.87 16 37 H 0.10 2.02 7.36 -51.93 -0.38 1.63 16 LS Contribution 289.07 15.07 4.36 4.36 Total: -1.00 -29.24 289.07 -9.30 -38.54 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: -5.42 Total: 5.83 kcal Atomic # 6 Polarization: -14.24 SS G_CDS: -3.95 Total: -18.19 kcal Atomic # 7 Polarization: -47.76 SS G_CDS: 0.35 Total: -47.41 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.64 Total: 16.87 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -29.24 -9.30 -38.54 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260720739.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.900 kcal (2) G-P(sol) polarization free energy of solvation -29.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.542 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds