Wall clock time and date at job start Mon Mar 30 2020 05:48:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35901 * 116.99956 * 2 1 4 4 C 1.38758 * 120.05473 * 0.02562 * 3 2 1 5 5 C 1.38125 * 119.94082 * 179.97438 * 4 3 2 6 6 C 1.38281 * 120.05855 * 0.02562 * 5 4 3 7 7 C 1.38250 * 120.11168 * 359.97438 * 6 5 4 8 8 C 1.50701 * 119.96939 * 180.02562 * 7 6 5 9 9 H 1.09008 * 115.54727 * 154.32936 * 8 7 6 10 10 C 1.52993 * 117.50324 * 8.62546 * 8 7 6 11 11 C 1.52996 * 117.50145 * 299.99811 * 8 7 6 12 12 H 1.08996 * 117.50093 * 214.98237 * 11 8 7 13 13 C 1.53000 * 117.49729 * 359.97438 * 11 8 7 14 14 H 1.09007 * 109.47203 * 60.00206 * 13 11 8 15 15 C 1.53002 * 109.47121 * 179.97438 * 13 11 8 16 16 C 1.50701 * 109.47345 * 300.00047 * 13 11 8 17 17 H 1.07995 * 119.99642 * 359.97438 * 16 13 11 18 18 C 1.37870 * 119.99868 * 180.02562 * 16 13 11 19 19 N 1.31517 * 120.00724 * 359.97438 * 18 16 13 20 20 Si 1.86807 * 119.99743 * 179.97438 * 18 16 13 21 21 H 1.48496 * 109.47099 * 359.97438 * 20 18 16 22 22 H 1.48505 * 109.47026 * 120.00101 * 20 18 16 23 23 H 1.48497 * 109.47149 * 239.99662 * 20 18 16 24 24 C 1.38158 * 120.05410 * 359.97438 * 7 6 5 25 25 H 1.09003 * 109.47704 * 59.99947 * 1 2 3 26 26 H 1.09001 * 109.47281 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47345 * 299.99594 * 1 2 3 28 28 H 1.07994 * 120.02555 * 0.25047 * 4 3 2 29 29 H 1.08005 * 119.96633 * 180.02562 * 5 4 3 30 30 H 1.07999 * 119.94734 * 180.02562 * 6 5 4 31 31 H 1.09007 * 117.49791 * 359.97438 * 10 8 7 32 32 H 1.08994 * 117.50267 * 145.01746 * 10 8 7 33 33 H 1.08993 * 109.47293 * 300.00431 * 15 13 11 34 34 H 1.09007 * 109.46469 * 60.00302 * 15 13 11 35 35 H 1.09004 * 109.47171 * 179.97438 * 15 13 11 36 36 H 0.96998 * 120.00348 * 180.02562 * 19 18 16 37 37 H 1.08005 * 120.02403 * 179.97438 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2913 2.3753 0.0005 5 6 1.9208 3.6048 0.0011 6 6 3.3018 3.6758 0.0005 7 6 4.0559 2.5171 0.0000 8 6 5.5607 2.5983 0.0000 9 1 6.0779 1.7383 0.4257 10 6 6.1939 3.9760 0.2041 11 6 6.2296 3.3144 -1.1750 12 1 7.1869 2.9258 -1.5221 13 6 5.3195 3.8928 -2.2604 14 1 4.6492 4.6297 -1.8179 15 6 6.1737 4.5634 -3.3381 16 6 4.5085 2.7837 -2.8795 17 1 4.6303 1.7679 -2.5337 18 6 3.6118 3.0658 -3.8881 19 7 3.4638 4.3028 -4.3096 20 14 2.6070 1.6909 -4.6560 21 1 2.9578 0.4009 -4.0096 22 1 1.1608 1.9661 -4.4604 23 1 2.9038 1.6129 -6.1089 24 6 3.4310 1.2849 0.0005 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 0.2128 2.3203 0.0050 29 1 1.3338 4.5114 0.0019 30 1 3.7921 4.6381 0.0014 31 1 5.5221 4.8239 0.3380 32 1 7.1278 4.0227 0.7642 33 1 6.7600 5.3656 -2.8901 34 1 6.8443 3.8268 -3.7807 35 1 5.5254 4.9751 -4.1117 36 1 2.8326 4.5013 -5.0189 37 1 4.0207 0.3800 -0.0003 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260751291.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:48:59 Heat of formation + Delta-G solvation = -8.240280 kcal Electronic energy + Delta-G solvation = -18332.812851 eV Core-core repulsion = 15654.482906 eV Total energy + Delta-G solvation = -2678.329945 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.10676 -39.58568 -37.31019 -35.11382 -32.21358 -31.54253 -30.46241 -28.12508 -27.05468 -24.40523 -23.85400 -23.47762 -21.35369 -20.48971 -18.47232 -18.00643 -17.10707 -16.87639 -16.58027 -16.52195 -15.92405 -15.27135 -14.71329 -14.42090 -14.32741 -13.72141 -13.65082 -13.24553 -13.08597 -12.85060 -12.78691 -12.43300 -12.31843 -12.27308 -12.02524 -11.81562 -11.57533 -11.38404 -11.09368 -10.85355 -10.39848 -10.28629 -9.32327 -8.88265 -7.98152 -6.02135 0.58719 0.71901 1.32304 1.36846 1.46979 2.44749 2.46628 2.87130 3.32163 3.41093 3.91043 4.02724 4.21669 4.25721 4.28344 4.35965 4.36703 4.40384 4.58530 4.65119 4.72412 4.87178 4.98538 5.00259 5.08229 5.14066 5.23657 5.35562 5.47757 5.50089 5.53459 5.68092 5.75714 5.94167 6.03133 6.11611 6.23592 6.53275 6.59399 7.04648 7.61770 9.06983 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.016989 B = 0.011593 C = 0.008142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1647.720470 B = 2414.717583 C = 3438.296509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.340 6.340 3 C 0.110 3.890 4 C -0.227 4.227 5 C -0.087 4.087 6 C -0.145 4.145 7 C 0.024 3.976 8 C -0.126 4.126 9 H 0.117 0.883 10 C -0.162 4.162 11 C -0.126 4.126 12 H 0.098 0.902 13 C 0.068 3.932 14 H 0.013 0.987 15 C -0.129 4.129 16 C -0.476 4.476 17 H 0.043 0.957 18 C 0.024 3.976 19 N -0.916 5.916 20 Si 0.916 3.084 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.284 1.284 24 C -0.167 4.167 25 H 0.048 0.952 26 H 0.122 0.878 27 H 0.069 0.931 28 H 0.140 0.860 29 H 0.133 0.867 30 H 0.118 0.882 31 H 0.090 0.910 32 H 0.116 0.884 33 H 0.028 0.972 34 H 0.024 0.976 35 H 0.053 0.947 36 H 0.253 0.747 37 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.419 -3.434 10.363 11.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.255 6.255 3 C 0.065 3.935 4 C -0.246 4.246 5 C -0.105 4.105 6 C -0.163 4.163 7 C 0.024 3.976 8 C -0.144 4.144 9 H 0.135 0.865 10 C -0.198 4.198 11 C -0.144 4.144 12 H 0.116 0.884 13 C 0.050 3.950 14 H 0.031 0.969 15 C -0.187 4.187 16 C -0.514 4.514 17 H 0.061 0.939 18 C -0.174 4.174 19 N -0.558 5.558 20 Si 0.744 3.256 21 H -0.200 1.200 22 H -0.214 1.214 23 H -0.210 1.210 24 C -0.186 4.186 25 H 0.067 0.933 26 H 0.140 0.860 27 H 0.088 0.912 28 H 0.158 0.842 29 H 0.151 0.849 30 H 0.136 0.864 31 H 0.108 0.892 32 H 0.135 0.865 33 H 0.047 0.953 34 H 0.043 0.957 35 H 0.072 0.928 36 H 0.063 0.937 37 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -2.447 -3.545 10.234 11.103 hybrid contribution -0.977 -0.556 -1.009 1.511 sum -3.423 -4.101 9.225 10.660 Atomic orbital electron populations 1.23279 0.77001 1.05341 1.01798 1.85985 1.23136 1.27146 1.89226 1.19033 0.92412 0.84496 0.97565 1.21249 1.00348 0.92170 1.10791 1.21035 0.94731 0.97454 0.97247 1.20909 0.93958 0.98107 1.03289 1.18771 0.93932 0.91854 0.93069 1.21099 0.90636 0.97259 1.05370 0.86525 1.23235 1.02524 0.94501 0.99587 1.22592 0.99594 1.02365 0.89860 0.88430 1.18284 0.91716 0.94124 0.90892 0.96882 1.21662 0.98230 0.98038 1.00771 1.21261 1.19570 0.93986 1.16609 0.93866 1.25316 0.98117 0.96114 0.97808 1.69980 1.37175 1.18742 1.29907 0.86126 0.79374 0.81585 0.78478 1.20035 1.21383 1.21031 1.20165 0.91598 0.98133 1.08697 0.93330 0.86021 0.91195 0.84209 0.84910 0.86427 0.89152 0.86549 0.95284 0.95730 0.92812 0.93728 0.86091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.48 9.81 113.37 1.11 1.60 16 2 O -0.34 -11.79 10.50 -92.44 -0.97 -12.76 16 3 C 0.11 4.19 6.69 22.51 0.15 4.34 16 4 C -0.23 -8.11 9.04 22.37 0.20 -7.91 16 5 C -0.09 -3.21 10.04 22.25 0.22 -2.99 16 6 C -0.14 -5.70 7.58 22.28 0.17 -5.53 16 7 C 0.02 0.94 3.56 -19.88 -0.07 0.87 16 8 C -0.13 -4.48 5.87 -11.54 -0.07 -4.55 16 9 H 0.12 3.66 8.14 -2.38 -0.02 3.64 16 10 C -0.16 -5.14 9.51 30.59 0.29 -4.85 16 11 C -0.13 -4.92 5.10 -10.79 -0.06 -4.98 16 12 H 0.10 3.62 8.11 -2.39 -0.02 3.60 16 13 C 0.07 3.27 1.72 -11.54 -0.02 3.25 16 14 H 0.01 0.68 5.91 -2.38 -0.01 0.67 16 15 C -0.13 -6.16 8.95 71.98 0.64 -5.51 16 16 C -0.48 -25.51 6.75 25.60 0.17 -25.34 16 17 H 0.04 2.39 7.16 -2.91 -0.02 2.37 16 18 C 0.02 1.32 5.30 84.65 0.45 1.77 16 19 N -0.92 -52.92 11.32 21.45 0.24 -52.68 16 20 Si 0.92 45.61 29.54 68.60 2.03 47.64 16 21 H -0.28 -13.76 7.11 99.48 0.71 -13.06 16 22 H -0.29 -14.22 7.11 99.48 0.71 -13.51 16 23 H -0.28 -13.88 7.11 99.48 0.71 -13.17 16 24 C -0.17 -6.67 9.49 22.36 0.21 -6.46 16 25 H 0.05 1.20 7.67 -2.39 -0.02 1.18 16 26 H 0.12 2.16 8.14 -2.39 -0.02 2.14 16 27 H 0.07 1.41 7.66 -2.39 -0.02 1.39 16 28 H 0.14 4.12 6.30 -2.91 -0.02 4.10 16 29 H 0.13 4.25 8.06 -2.91 -0.02 4.23 16 30 H 0.12 4.54 5.16 -2.91 -0.02 4.53 16 31 H 0.09 2.93 6.08 -2.38 -0.01 2.91 16 32 H 0.12 2.93 8.14 -2.39 -0.02 2.92 16 33 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.02 1.11 8.14 -2.38 -0.02 1.09 16 35 H 0.05 2.87 6.07 -2.38 -0.01 2.86 16 36 H 0.25 14.18 8.31 -92.71 -0.77 13.41 16 37 H 0.12 4.58 8.06 -2.91 -0.02 4.56 16 Total: -1.00 -62.80 297.35 5.77 -57.04 By element: Atomic # 1 Polarization: 16.00 SS G_CDS: 1.05 Total: 17.05 kcal Atomic # 6 Polarization: -59.70 SS G_CDS: 3.41 Total: -56.28 kcal Atomic # 7 Polarization: -52.92 SS G_CDS: 0.24 Total: -52.68 kcal Atomic # 8 Polarization: -11.79 SS G_CDS: -0.97 Total: -12.76 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.64 kcal Total: -62.80 5.77 -57.04 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260751291.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.799 kcal (2) G-P(sol) polarization free energy of solvation -62.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds