Wall clock time and date at job start Mon Mar 30 2020 05:49:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35908 * 116.99959 * 2 1 4 4 C 1.38730 * 120.05420 * 180.02562 * 3 2 1 5 5 C 1.38142 * 119.93997 * 180.02562 * 4 3 2 6 6 C 1.38265 * 120.06141 * 0.02562 * 5 4 3 7 7 C 1.50692 * 119.94795 * 179.97438 * 6 5 4 8 8 H 1.08997 * 115.56331 * 334.31223 * 7 6 5 9 9 C 1.52998 * 117.50084 * 188.61656 * 7 6 5 10 10 C 1.52995 * 60.00382 * 252.50974 * 9 7 6 11 11 H 1.09001 * 117.49664 * 107.50998 * 10 9 7 12 12 C 1.52996 * 117.50145 * 252.50781 * 10 9 7 13 13 H 1.09003 * 109.47069 * 8.61077 * 12 10 9 14 14 C 1.53005 * 109.47122 * 248.60826 * 12 10 9 15 15 C 1.50700 * 109.47072 * 128.61057 * 12 10 9 16 16 H 1.07996 * 120.00233 * 28.56950 * 15 12 10 17 17 C 1.37878 * 119.99672 * 208.57436 * 15 12 10 18 18 N 1.31510 * 120.00322 * 353.62232 * 17 15 12 19 19 Si 1.86806 * 119.99940 * 173.33956 * 17 15 12 20 20 H 1.48504 * 109.46798 * 90.00119 * 19 17 15 21 21 H 1.48496 * 109.47174 * 210.00055 * 19 17 15 22 22 H 1.48501 * 109.47178 * 330.00486 * 19 17 15 23 23 C 1.38271 * 120.10466 * 0.24566 * 6 5 4 24 24 C 1.38141 * 120.05619 * 359.45669 * 23 6 5 25 25 H 1.08999 * 109.46764 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47163 * 299.99537 * 1 2 3 27 27 H 1.08999 * 109.47280 * 60.00171 * 1 2 3 28 28 H 1.08006 * 120.02850 * 0.04340 * 4 3 2 29 29 H 1.08005 * 119.97272 * 179.97438 * 5 4 3 30 30 H 1.09000 * 117.49770 * 145.02013 * 9 7 6 31 31 H 1.09002 * 117.51570 * 359.97438 * 9 7 6 32 32 H 1.09002 * 109.46950 * 297.66548 * 14 12 10 33 33 H 1.08992 * 109.46825 * 57.66774 * 14 12 10 34 34 H 1.09000 * 109.47000 * 177.66717 * 14 12 10 35 35 H 0.97001 * 120.00161 * 354.24013 * 18 17 15 36 36 H 1.07997 * 119.96715 * 179.70539 * 23 6 5 37 37 H 1.08004 * 120.02470 * 180.29079 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4313 1.2849 -0.0005 5 6 4.0560 2.5170 0.0000 6 6 3.3019 3.6759 0.0016 7 6 3.9860 5.0185 0.0028 8 1 4.9892 5.0349 0.4286 9 6 3.1112 6.2569 0.2078 10 6 3.7016 5.9574 -1.1715 11 1 3.0196 5.6041 -1.9449 12 6 4.8472 6.8472 -1.6580 13 1 5.1750 7.4946 -0.8447 14 6 4.3646 7.7047 -2.8297 15 6 5.9976 5.9839 -2.1077 16 1 5.8105 4.9923 -2.4926 17 6 7.2891 6.4600 -2.0277 18 7 7.5093 7.7086 -1.6786 19 14 8.7267 5.3291 -2.4077 20 1 9.0508 5.4097 -3.8547 21 1 9.9087 5.7466 -1.6116 22 1 8.3632 3.9322 -2.0589 23 6 1.9210 3.6047 0.0078 24 6 1.2915 2.3751 0.0011 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 4.0209 0.3799 -0.0017 29 1 5.1345 2.5751 0.0000 30 1 3.5390 7.0880 0.7687 31 1 2.0408 6.1008 0.3415 32 1 4.0758 7.0581 -3.6584 33 1 3.5063 8.2986 -2.5159 34 1 5.1681 8.3681 -3.1496 35 1 6.7636 8.3174 -1.5586 36 1 1.3342 4.5113 0.0139 37 1 0.2129 2.3202 0.0012 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260803117.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:07 Heat of formation + Delta-G solvation = -21.269087 kcal Electronic energy + Delta-G solvation = -17316.059351 eV Core-core repulsion = 14637.164434 eV Total energy + Delta-G solvation = -2678.894916 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.17501 -39.58476 -37.71301 -35.38113 -32.29130 -31.94742 -30.50790 -28.05534 -26.85328 -24.57627 -24.10372 -23.10912 -21.45875 -21.06204 -19.14120 -18.69163 -17.23976 -16.61963 -16.60715 -15.95364 -15.68530 -15.56099 -15.05283 -14.58987 -14.33390 -13.91616 -13.66460 -13.42093 -13.25017 -13.05826 -12.80875 -12.56593 -12.37948 -12.33108 -12.05177 -11.95585 -11.70222 -11.33206 -11.25656 -10.87410 -10.47123 -10.19471 -9.95372 -8.87742 -8.52388 -6.21940 0.38776 0.43395 1.52770 1.60280 1.78069 2.39657 2.58247 2.69480 3.21624 3.28216 3.74169 3.85146 3.96958 4.12384 4.25655 4.28666 4.41184 4.41611 4.43796 4.58872 4.63558 4.69479 4.74523 4.75587 4.83454 4.98013 5.08464 5.12165 5.20908 5.30920 5.33856 5.45845 5.48541 5.76751 5.79373 5.83315 6.19224 6.32464 6.47256 6.74252 7.54962 8.86191 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.026803 B = 0.005593 C = 0.004893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.390689 B = 5005.154118 C = 5720.653989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.335 6.335 3 C 0.107 3.893 4 C -0.157 4.157 5 C -0.090 4.090 6 C -0.086 4.086 7 C -0.108 4.108 8 H 0.083 0.917 9 C -0.166 4.166 10 C -0.114 4.114 11 H 0.091 0.909 12 C 0.043 3.957 13 H 0.006 0.994 14 C -0.123 4.123 15 C -0.582 4.582 16 H 0.038 0.962 17 C -0.031 4.031 18 N -0.945 5.945 19 Si 1.104 2.896 20 H -0.277 1.277 21 H -0.285 1.285 22 H -0.273 1.273 23 C -0.088 4.088 24 C -0.200 4.200 25 H 0.120 0.880 26 H 0.065 0.935 27 H 0.062 0.938 28 H 0.139 0.861 29 H 0.123 0.877 30 H 0.084 0.916 31 H 0.117 0.883 32 H 0.040 0.960 33 H 0.045 0.955 34 H 0.020 0.980 35 H 0.259 0.741 36 H 0.140 0.860 37 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.076 -12.267 4.298 19.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.249 6.249 3 C 0.062 3.938 4 C -0.175 4.175 5 C -0.108 4.108 6 C -0.086 4.086 7 C -0.126 4.126 8 H 0.101 0.899 9 C -0.203 4.203 10 C -0.132 4.132 11 H 0.109 0.891 12 C 0.025 3.975 13 H 0.024 0.976 14 C -0.181 4.181 15 C -0.620 4.620 16 H 0.057 0.943 17 C -0.228 4.228 18 N -0.583 5.583 19 Si 0.927 3.073 20 H -0.203 1.203 21 H -0.211 1.211 22 H -0.198 1.198 23 C -0.106 4.106 24 C -0.219 4.219 25 H 0.138 0.862 26 H 0.084 0.916 27 H 0.081 0.919 28 H 0.157 0.843 29 H 0.141 0.859 30 H 0.103 0.897 31 H 0.135 0.865 32 H 0.059 0.941 33 H 0.064 0.936 34 H 0.039 0.961 35 H 0.069 0.931 36 H 0.158 0.842 37 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -13.362 -12.554 4.287 18.829 hybrid contribution -1.387 0.602 -0.095 1.515 sum -14.749 -11.952 4.192 19.442 Atomic orbital electron populations 1.23343 0.76507 1.05564 1.02239 1.86033 1.23462 1.26554 1.88901 1.19096 0.92303 0.84833 0.97522 1.20525 0.92146 0.98319 1.06552 1.20921 1.00190 0.91419 0.98263 1.19239 0.93930 0.93177 1.02238 1.20801 0.98530 0.88523 1.04787 0.89881 1.23246 0.99420 0.97983 0.99609 1.22356 0.99501 1.00744 0.90582 0.89110 1.18542 0.92275 0.93129 0.93596 0.97577 1.21740 0.98305 0.98688 0.99346 1.22162 0.93417 1.01610 1.44854 0.94314 1.26993 1.03011 0.98803 0.94031 1.70866 1.35189 1.05359 1.46887 0.83102 0.73143 0.74024 0.76994 1.20334 1.21088 1.19817 1.21027 0.93350 0.98227 0.98002 1.21421 1.01104 0.91377 1.07952 0.86202 0.91626 0.91916 0.84331 0.85929 0.89734 0.86494 0.94085 0.93565 0.96071 0.93077 0.84205 0.82762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.81 113.37 1.11 1.36 16 2 O -0.34 -7.87 10.50 -92.51 -0.97 -8.84 16 3 C 0.11 2.88 6.69 22.50 0.15 3.03 16 4 C -0.16 -4.59 9.99 22.36 0.22 -4.37 16 5 C -0.09 -2.98 9.73 22.25 0.22 -2.77 16 6 C -0.09 -2.91 5.61 -19.85 -0.11 -3.02 16 7 C -0.11 -4.19 5.38 -11.54 -0.06 -4.25 16 8 H 0.08 3.69 8.14 -2.39 -0.02 3.67 16 9 C -0.17 -5.67 9.50 30.59 0.29 -5.38 16 10 C -0.11 -4.67 4.77 -10.79 -0.05 -4.72 16 11 H 0.09 3.61 8.11 -2.39 -0.02 3.59 16 12 C 0.04 2.15 2.09 -11.54 -0.02 2.13 16 13 H 0.01 0.33 6.72 -2.39 -0.02 0.31 16 14 C -0.12 -5.64 9.08 71.98 0.65 -4.98 16 15 C -0.58 -32.51 7.95 25.60 0.20 -32.31 16 16 H 0.04 2.19 7.82 -2.91 -0.02 2.17 16 17 C -0.03 -1.78 5.45 84.66 0.46 -1.32 16 18 N -0.94 -57.94 13.55 21.45 0.29 -57.65 16 19 Si 1.10 51.27 29.91 68.60 2.05 53.32 16 20 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 21 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 22 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 23 C -0.09 -2.47 9.30 22.25 0.21 -2.27 16 24 C -0.20 -4.89 9.04 22.36 0.20 -4.68 16 25 H 0.12 1.07 8.14 -2.39 -0.02 1.05 16 26 H 0.07 0.76 7.66 -2.39 -0.02 0.74 16 27 H 0.06 0.76 7.66 -2.39 -0.02 0.75 16 28 H 0.14 3.58 8.06 -2.91 -0.02 3.56 16 29 H 0.12 4.15 8.06 -2.91 -0.02 4.12 16 30 H 0.08 2.97 8.05 -2.39 -0.02 2.95 16 31 H 0.12 3.16 6.17 -2.39 -0.01 3.15 16 32 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 33 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 34 H 0.02 1.02 7.68 -2.39 -0.02 1.00 16 35 H 0.26 15.95 6.37 -92.71 -0.59 15.36 16 36 H 0.14 3.36 6.01 -2.91 -0.02 3.35 16 37 H 0.15 2.70 6.30 -2.91 -0.02 2.68 16 Total: -1.00 -65.95 306.90 6.07 -59.89 By element: Atomic # 1 Polarization: 15.61 SS G_CDS: 1.22 Total: 16.83 kcal Atomic # 6 Polarization: -67.02 SS G_CDS: 3.47 Total: -63.54 kcal Atomic # 7 Polarization: -57.94 SS G_CDS: 0.29 Total: -57.65 kcal Atomic # 8 Polarization: -7.87 SS G_CDS: -0.97 Total: -8.84 kcal Atomic # 14 Polarization: 51.27 SS G_CDS: 2.05 Total: 53.32 kcal Total: -65.95 6.07 -59.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260803117.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.618 kcal (2) G-P(sol) polarization free energy of solvation -65.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds