Wall clock time and date at job start Mon Mar 30 2020 06:06:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30690 * 1 3 3 Si 1.86799 * 119.99779 * 2 1 4 4 H 1.48507 * 109.46735 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47292 * 299.99556 * 3 2 1 6 6 H 1.48503 * 109.46993 * 60.00080 * 3 2 1 7 7 C 1.40240 * 120.00048 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99867 * 180.02562 * 7 2 1 9 9 C 1.39994 * 119.99990 * 359.97438 * 7 2 1 10 10 N 1.32986 * 125.96084 * 0.02562 * 9 7 2 11 11 C 1.32764 * 109.22079 * 179.97438 * 10 9 7 12 12 C 1.50701 * 125.68562 * 180.02562 * 11 10 9 13 13 C 1.54272 * 110.02744 * 212.14034 * 12 11 10 14 14 C 1.54890 * 104.19274 * 217.10552 * 13 12 11 15 15 C 1.54894 * 102.74996 * 37.94637 * 14 13 12 16 16 C 1.53872 * 110.03278 * 94.97693 * 12 11 10 17 17 C 1.36211 * 108.62245 * 359.97438 * 11 10 9 18 18 N 1.36425 * 107.19316 * 0.02562 * 17 11 10 19 19 C 1.46500 * 126.55653 * 180.02562 * 18 17 11 20 20 C 1.53006 * 117.49651 * 8.71918 * 19 18 17 21 21 C 1.53005 * 117.49713 * 300.06191 * 19 18 17 22 22 H 0.97001 * 120.00313 * 0.02562 * 1 2 3 23 23 H 1.09001 * 110.02196 * 333.58198 * 12 11 10 24 24 H 1.08996 * 110.49145 * 335.78117 * 13 12 11 25 25 H 1.08998 * 110.48168 * 98.43563 * 13 12 11 26 26 H 1.09003 * 110.76084 * 279.63063 * 14 13 12 27 27 H 1.09004 * 110.75751 * 156.25528 * 14 13 12 28 28 H 1.08999 * 110.48414 * 203.37868 * 15 14 13 29 29 H 1.08994 * 110.59746 * 80.78794 * 15 14 13 30 30 H 1.08998 * 110.03389 * 238.56878 * 16 12 11 31 31 H 1.09008 * 110.03361 * 359.94764 * 16 12 11 32 32 H 1.08001 * 126.40726 * 180.26169 * 17 11 10 33 33 H 1.08997 * 115.55072 * 154.39364 * 19 18 17 34 34 H 1.09000 * 117.50028 * 0.02562 * 20 19 18 35 35 H 1.09003 * 117.49504 * 145.02550 * 20 19 18 36 36 H 1.08996 * 117.50102 * 214.97737 * 21 19 18 37 37 H 1.09004 * 117.49965 * 359.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2408 1.6178 0.0000 4 1 3.7009 1.3464 0.0006 5 1 1.8822 2.3964 -1.2125 6 1 1.8820 2.3964 1.2125 7 6 2.0081 -1.2145 0.0005 8 1 3.0881 -1.2145 0.0010 9 6 1.3081 -2.4269 0.0016 10 7 -0.0145 -2.5650 0.0018 11 6 -0.3190 -3.8573 0.0023 12 6 -1.7121 -4.4322 0.0021 13 6 -1.7325 -5.7678 0.7739 14 6 -2.7259 -6.6508 -0.0214 15 6 -2.4228 -6.2676 -1.4912 16 6 -2.1509 -4.7500 -1.4381 17 6 0.8376 -4.5767 0.0020 18 7 1.8684 -3.6830 0.0018 19 6 3.2985 -4.0006 0.0009 20 6 3.6973 -5.4633 -0.2056 21 6 3.8414 -4.8178 1.1750 22 1 -0.4851 0.8400 -0.0004 23 1 -2.4071 -3.7265 0.4571 24 1 -0.7409 -6.2200 0.7803 25 1 -2.0896 -5.6144 1.7923 26 1 -3.7555 -6.4038 0.2377 27 1 -2.5262 -7.7084 0.1510 28 1 -3.2834 -6.4790 -2.1258 29 1 -1.5433 -6.8003 -1.8528 30 1 -3.0593 -4.1991 -1.6818 31 1 -1.3566 -4.4875 -2.1370 32 1 0.9228 -5.6533 -0.0016 33 1 3.9495 -3.2366 -0.4241 34 1 2.8955 -6.1892 -0.3412 35 1 4.6108 -5.6615 -0.7662 36 1 4.8497 -4.5918 1.5220 37 1 3.1346 -5.1189 1.9482 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260845641.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:06:53 Heat of formation + Delta-G solvation = 49.657642 kcal Electronic energy + Delta-G solvation = -17917.663695 eV Core-core repulsion = 15274.137143 eV Total energy + Delta-G solvation = -2643.526552 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.97684 -38.85233 -37.66881 -35.22392 -32.38683 -30.89862 -29.48811 -29.13807 -26.44577 -23.75288 -23.37146 -21.95261 -21.57524 -20.84357 -19.63084 -18.72620 -17.63893 -16.58621 -16.35615 -15.98862 -15.76052 -15.05369 -14.71055 -14.59765 -14.14878 -13.93745 -13.35877 -13.02023 -12.91145 -12.60677 -12.49256 -12.43331 -11.99722 -11.89207 -11.84344 -11.70614 -11.67570 -11.49148 -11.36498 -11.32112 -11.00450 -9.68234 -9.54682 -8.84720 -8.31582 -6.24366 1.33178 1.41292 1.57127 1.76956 2.24900 2.55701 2.73899 2.92888 3.60523 3.74013 3.85552 3.87777 3.96325 4.02097 4.10521 4.43718 4.52311 4.62974 4.66160 4.74242 4.77900 4.85034 4.89373 4.92393 4.97349 5.11235 5.15185 5.16101 5.19748 5.28617 5.38412 5.51775 5.54677 5.66335 5.78260 6.24751 6.34821 6.74904 7.04232 7.44349 8.36214 8.64835 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.019296 B = 0.007970 C = 0.005979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.727122 B = 3512.192372 C = 4681.878698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.031 3.969 3 Si 0.992 3.008 4 H -0.252 1.252 5 H -0.270 1.270 6 H -0.270 1.270 7 C -0.491 4.491 8 H 0.084 0.916 9 C 0.341 3.659 10 N -0.557 5.557 11 C -0.009 4.009 12 C -0.004 4.004 13 C -0.109 4.109 14 C -0.112 4.112 15 C -0.112 4.112 16 C -0.107 4.107 17 C -0.152 4.152 18 N -0.480 5.480 19 C 0.048 3.952 20 C -0.156 4.156 21 C -0.176 4.176 22 H 0.273 0.727 23 H 0.044 0.956 24 H 0.065 0.935 25 H 0.060 0.940 26 H 0.074 0.926 27 H 0.086 0.914 28 H 0.081 0.919 29 H 0.064 0.936 30 H 0.057 0.943 31 H 0.033 0.967 32 H 0.161 0.839 33 H 0.125 0.875 34 H 0.094 0.906 35 H 0.132 0.868 36 H 0.126 0.874 37 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.315 -10.747 -0.444 11.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.187 4.187 3 Si 0.812 3.188 4 H -0.175 1.175 5 H -0.195 1.195 6 H -0.195 1.195 7 C -0.530 4.530 8 H 0.102 0.898 9 C 0.096 3.904 10 N -0.279 5.279 11 C -0.141 4.141 12 C -0.024 4.024 13 C -0.147 4.147 14 C -0.150 4.150 15 C -0.150 4.150 16 C -0.145 4.145 17 C -0.281 4.281 18 N -0.168 5.168 19 C -0.057 4.057 20 C -0.194 4.194 21 C -0.214 4.214 22 H 0.084 0.916 23 H 0.062 0.938 24 H 0.084 0.916 25 H 0.078 0.922 26 H 0.092 0.908 27 H 0.105 0.895 28 H 0.099 0.901 29 H 0.083 0.917 30 H 0.076 0.924 31 H 0.052 0.948 32 H 0.179 0.821 33 H 0.143 0.857 34 H 0.113 0.887 35 H 0.150 0.850 36 H 0.144 0.856 37 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 1.657 -10.088 -0.450 10.233 hybrid contribution 0.772 0.513 0.037 0.928 sum 2.430 -9.575 -0.412 9.887 Atomic orbital electron populations 1.70179 1.08882 1.28522 1.34335 1.26736 0.95573 1.03931 0.92499 0.85035 0.79247 0.76083 0.78423 1.17516 1.19484 1.19510 1.18517 0.93887 0.88466 1.52174 0.89753 1.20548 0.87721 0.84994 0.97138 1.71094 1.11202 1.16542 1.29092 1.21143 0.94977 0.91059 1.06939 1.19943 0.90122 0.96017 0.96292 1.22405 1.00207 0.93794 0.98327 1.22465 0.98901 0.99594 0.93997 1.22311 1.01631 0.93433 0.97618 1.22071 0.99388 0.97793 0.95238 1.21798 0.87369 0.94784 1.24168 1.45018 1.04568 1.06341 1.60837 1.21813 0.81161 0.96668 1.06092 1.23371 1.03962 0.92759 0.99280 1.23408 1.03079 1.03160 0.91800 0.91644 0.93791 0.91602 0.92151 0.90764 0.89523 0.90063 0.91679 0.92443 0.94847 0.82149 0.85722 0.88730 0.85019 0.85613 0.90080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -47.13 11.90 21.88 0.26 -46.87 16 2 C 0.03 1.71 5.50 85.35 0.47 2.18 16 3 Si 0.99 40.95 29.56 68.60 2.03 42.98 16 4 H -0.25 -9.74 7.11 99.48 0.71 -9.03 16 5 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 6 H -0.27 -10.79 7.11 99.48 0.71 -10.09 16 7 C -0.49 -28.12 9.06 23.18 0.21 -27.91 16 8 H 0.08 4.45 7.23 -2.91 -0.02 4.43 16 9 C 0.34 20.05 7.43 133.59 0.99 21.04 16 10 N -0.56 -34.12 9.41 -182.22 -1.71 -35.84 16 11 C -0.01 -0.45 5.82 41.95 0.24 -0.21 16 12 C 0.00 -0.17 3.43 -10.81 -0.04 -0.20 16 13 C -0.11 -3.52 6.30 31.67 0.20 -3.32 16 14 C -0.11 -2.73 6.91 31.89 0.22 -2.51 16 15 C -0.11 -2.98 6.83 31.67 0.22 -2.77 16 16 C -0.11 -3.91 6.45 31.32 0.20 -3.70 16 17 C -0.15 -7.08 9.85 83.51 0.82 -6.26 16 18 N -0.48 -23.63 3.14 -498.37 -1.57 -25.20 16 19 C 0.05 1.81 6.55 45.00 0.29 2.11 16 20 C -0.16 -4.31 10.00 30.62 0.31 -4.00 16 21 C -0.18 -5.24 10.41 30.62 0.32 -4.92 16 22 H 0.27 14.81 8.29 -92.71 -0.77 14.04 16 23 H 0.04 2.02 8.14 -2.39 -0.02 2.00 16 24 H 0.07 2.13 6.03 -2.39 -0.01 2.11 16 25 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 26 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 27 H 0.09 1.69 8.14 -2.38 -0.02 1.67 16 28 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 29 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 31 H 0.03 1.39 7.67 -2.38 -0.02 1.38 16 32 H 0.16 6.35 6.04 -2.91 -0.02 6.33 16 33 H 0.13 4.67 7.60 -2.39 -0.02 4.65 16 34 H 0.09 2.65 6.90 -2.39 -0.02 2.63 16 35 H 0.13 2.74 8.14 -2.39 -0.02 2.72 16 36 H 0.13 2.98 8.14 -2.39 -0.02 2.96 16 37 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 Total: -1.00 -72.62 301.03 4.52 -68.10 By element: Atomic # 1 Polarization: 26.25 SS G_CDS: 1.05 Total: 27.30 kcal Atomic # 6 Polarization: -34.93 SS G_CDS: 4.46 Total: -30.47 kcal Atomic # 7 Polarization: -104.89 SS G_CDS: -3.02 Total: -107.91 kcal Atomic # 14 Polarization: 40.95 SS G_CDS: 2.03 Total: 42.98 kcal Total: -72.62 4.52 -68.10 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260845641.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.754 kcal (2) G-P(sol) polarization free energy of solvation -72.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.096 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds